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Oryza sativa
cluster # 12650 cluster # 12650       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12650#0 length = 1718 sequences # 7  
consensus_12650#1 length = 662 sequences # 2  
consensus_12650#2 length = 285 sequences # 1  
consensus_12650#3 length = 111 sequences # 1  

consensusID : consensus_12650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1718
fasta sequence
                              [TCATGGCTACCGCCACCGCCGCCTCCCGCCTCGCGGTGGCCGGCGCTGAACCCGCTCGCGCCCGGCGCCACCGCCCGACGACGGTGGCAGTCTGCGGGGGCGCGAGGCCGAGGTCGCGCCCCGCGGCCGTCGTTGCCGCCGCCGGCGCCGCCGCTCCCTCTCCGGCCACCGGCGGCGTCGCGCCGGTTCCGCCAAGCCCCAGGGGCTCGATTATAAAGCGTCATACACTATCAGTTTTTGTTGGAGATGAAAGTGGGATGATTAATCGAATTGCTGGAGTTTTTGCTAGAAGAGGATACAACATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATTATTTACAATAGTAGTATCTGGAACTGAGAAAATACTGAAACAGGTTGTAGAGCAACTAAACAAACTTGTTAATGTTATACAGGTTGACGATCTGTCGAAGGAACCACAAGTTGAAAGAGAGCTAATGCTTATAAAACTAAATGTTGAGCCAGATAAGCGACCGGAGGTGATGGGTTTGGTTGACATCTTCAGAGCAAAGGTGGTTGACCTTTCTGACCACACACTAACTATTGAGGTAACTGGAGATCCTGGAAAAATTGTTGCTGTACAGAGGAACCTAAGCAAATTTGGAATCAAAGAAATTGCCAGAACTGGCAAGATAGCTTTGCGGCGTGAGAAAATGGGAGAAAGTGCTCCTTTTTGGCGGTTCTCTGCAGCTTCCTATCCTGATCTTGAAGTGGCAATGCCATCAAAATCTCATGTCAACACTGCGATGAAAACAGCTAACCAGAATTCTGAAGAATCTTCACAAGGTGATGTCTATCCAGTGGAGTCATATGAAAACTTCACAACAAATCAAATTCTTGATGCTCATTGGGGTGTCATGGCTGACGGTGATCCAACAGGGCTTTGTTCACATTCTTTGTCCATTTTGGTGAATGATTTCCCTGGAGTTCTCAATGTTGTAACAGGTGTTTTCTCCCGAAGAGGCTACAATATTCAGAGTCTGGCTGTTGGCCCAGCTGAAAAAGAAGGCACTTCTCGGATCACTACTGTTGTCCCTGGAACTGATGAGTCTATTGCCAAGCTAGTACACCAACTGTATAAGCTCATTGATGTTTATGAGGTCCAGGATCTTACTCATTTACCATTTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCGCAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAATAGTGGTCACAGTTTGTGTCAGTTGTATTAGAAAAGATTCAATAAAAGTATTTGAGTTGGCTCAAAATTGTTGTATCTGACCATTAAAGCTGTTTATTTTTCTAGTTCTTATATTGCATAGTTTCTGGCTTTCTGCGTAAAAAAAAAAAAAAAAAAAAACTCG]

[+] EMBL CB647744             [TCATGGCTACCGCCACCGCCGCCTCCCGCCTCGCGGTGGCCGGCGCTGAACCCGCTCGCGCCCGGCGCCACCGCCCGACGACGGTGGCAGTCTGCGGGGGCGCGAGGCCGAGGTCGCGCCCCGCGGCCGTCGTTGCCGCCGCCGGCGCCGCCGCTCCCTCTCCGGCCACCGGCGGCGTCGCGCCGGTTCCGCCAAGCCCCAGGGGCTCGATTATAAAGCGTCATACACTATCAGTTTTTGTTGGAGATGAAAGTGGGATGATTAATCGAATTGCTGGAGTTTTTGCTAGAAGAGGATACAACATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATTATTTACAATAGTAGTATCTGGAACTGAGAAAATACTGAAACAGGTTGTAGAGCAACTAAACAAACTTGTTAATGTTATACAGGTTGACGATCTGTCGAAGGAACCACAAGTTGAAAGAGAGCTAATGCTTATAAAACTAAATGTTGAGCCAGATAAGCGACCGGAGGTGATGGGTTTGGTTGACATCTTCAGAGCAAAGGTGGTTGACCTTTCTGACCACACACTAACTATTGAGGTAACTGGAGATCCTGGAAAAATTGTTGCTGTACAGAGGAACCTAAGCAAATTTGGAATCAAAGAAATTGCCAGAACTGGCAAGATAGCTTTGCGGCGTGAGAAAATGGGAGAAAGTGCTCCTTTTTGGCGGTTCTCTGCAGCTTCCTATCCTGATCTTGAAGTGGCAATGCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB642033             [                                                                                                                                                                                                                                                                                                                                                                AGTACTATCTGGAACTGAGAAAATACTGAAACAGGTTGTAGAGCAACTAAACAAACTTGTTAATGTTATACAGGTTGACGATCTGTCGAAGGAACCACAAGTTGAAAGAGAGCTAATGCTTATAAAACTAAATGTTGAGCCAGATAAGCGACCGGAGGTGATGGGTTTGGTTGACATCTTCAGAGCAAAGGTGGTTGACCTTTCTGACCACACACTAACTATTGAGGTAACTGGAGATCCTGGAAAAATTGTTGCTGTACAGAGGAACCTAAGCAAATTTGGAATCAAAGAAATTGCCAGAACTGGCAAGATAGCTTTGCGGCGTGAGAAAATGGGAGAAAGTGCTCCTTTTTGGCGGTTCTCTGCAGCTTCCTATCCTGATCTTGAAGTGGCAATGCCATCAAAATCTCATGTCAACACTGCGATGAAAACAGCTAACCAGAATTCTGAAGAATCTTCACAAGGTGATGTCTATCCAGTGGAGTCATATGAAAACTTCACAACAAATCAAATTCTTGATGCTCATTGGGGTGTCATGGCTGACGGTGATCCAACAGGGCTTTGTTCACATTCTTTGTCCATTTTGGTGAATGATTTCCCTGGAGTTCTCAATGTTGTAACAGGTGTTTTCTCCCGAAGAGGCTACAATATTCAGAGTCTGGCTGTTGGCCCAGCTGAAAAAGAAGGCACTTCTCGGATCACTACTGTTGTCCCTGGAACTGATGAGTCTATTGCCAAGCTAGTACACCAACTGTATAAGCTCATTGATGTTTATGAGGTCCAGGATCTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AA754274             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cgagGGCAATGCCATCANVVNVTCATGTCAACACTGCGATGAAAACAGCTAACCAGHHTTCYBMMGMMTCTTCACTAGGTGATGTCTATCCAGTGGAGTCATATGAAAACTTCACAACAAATCAAATTCTTGATGCTCATTGGGGTGTCATGGCTGACGGTGMTCCAACAGGGCTTTGTTCACATTCTTTGTCCATTTTGGTGAATGATTTCCCTGGAGTTCTCAATGTTGTAACAGGTGTTTTCTCCCGRAGAGGCTACAATATTCAGAGTCTGGCTGTTGG CCAGCTGAAAAAGAAGGCACTTCTCGGMTCACTACTGTTGTCCCKGGMACTGATGAGTCTATTGCCAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB642034             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACTTCACAACAAATCAAATTCTTGATGCTCATTGGGGTGTCATGGCTGACGGTGATCCAACAGGGCTTTGTTCACATTCTTTGTCCATTTTGGTGAATGATTTCCCTGGAGTTCTCAATGTTGTAACAGGTGTTTTCTCCCGAAGAGGCTACAATATTCAGAGTCTGGCTGTTGGCCCAGCTGAAAAAGAAGGCACTTCTCGGATCACTACTGTTGTCCCTGGAACTGATGAGTCTATTGCCAAGCTAGTACACCAACTGTATAAGCTCATTGATGTTTATGAGGTCCAGGATCTTACTCATTTACCATTTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCGCAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAATAGTGGTCACAGTTTGTGTCAGTTGTATTAGAAAAGATTCAATAAAAGTATTTG                                                                                                             ]
[-] EMBL CB647745             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCATTTTGGTGAATGATTTCCCTGGAGTTCTCAATGTTGTAACAGGTGTTTTCTCCCGAAGAGGCTACAATATTCAGAGTCTGGCTGTTGGCCCAGCTGAAAAAGAAGGCACTTCTCGGATCACTACTGTTGTCCCTGGAACTGATGAGTCTATTGCCAAGCTAGTACACCAACTGTATAAGCTCATTGATGTTTATGAGGTCCAGGATCTTACTCATTTACCATTTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCGCAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATCCAATAAGAAAATAGTGGTCCCAGTTTGTGTCAGTTGTATTAGAAAAGATTCAATAAAAGTATTTG                                                                                                             ]
[-] EMBL CF325673             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAATAGTGGTCACAGTTTGTGTCAGTTGTATTAGAAAAGATTCAATAAAAGTATTTGAGTTGGCTCAAAATTGTTGTATCTGACCATTAAAGCTGTTTATTTTTCTAGTTCTTATATTGCATAGTTTCTGGCTTTCTGCGTAAAAAAAAAAAAAAAAAAAAACTCG]
[+] EMBL AA751322             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAATAGCGGTCACAGTTTGTGTCAGTTGTATTAGAAMAGATTCAATAAAAGTA                                                                                                                 ]


>consensus_12650#0 TCATGGCTACCGCCACCGCCGCCTCCCGCCTCGCGGTGGCCGGCGCTGAACCCGCTCGCG CCCGGCGCCACCGCCCGACGACGGTGGCAGTCTGCGGGGGCGCGAGGCCGAGGTCGCGCC CCGCGGCCGTCGTTGCCGCCGCCGGCGCCGCCGCTCCCTCTCCGGCCACCGGCGGCGTCG CGCCGGTTCCGCCAAGCCCCAGGGGCTCGATTATAAAGCGTCATACACTATCAGTTTTTG TTGGAGATGAAAGTGGGATGATTAATCGAATTGCTGGAGTTTTTGCTAGAAGAGGATACA ACATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATTATTTACAATAGTAGTAT CTGGAACTGAGAAAATACTGAAACAGGTTGTAGAGCAACTAAACAAACTTGTTAATGTTA TACAGGTTGACGATCTGTCGAAGGAACCACAAGTTGAAAGAGAGCTAATGCTTATAAAAC TAAATGTTGAGCCAGATAAGCGACCGGAGGTGATGGGTTTGGTTGACATCTTCAGAGCAA AGGTGGTTGACCTTTCTGACCACACACTAACTATTGAGGTAACTGGAGATCCTGGAAAAA TTGTTGCTGTACAGAGGAACCTAAGCAAATTTGGAATCAAAGAAATTGCCAGAACTGGCA AGATAGCTTTGCGGCGTGAGAAAATGGGAGAAAGTGCTCCTTTTTGGCGGTTCTCTGCAG CTTCCTATCCTGATCTTGAAGTGGCAATGCCATCAAAATCTCATGTCAACACTGCGATGA AAACAGCTAACCAGAATTCTGAAGAATCTTCACAAGGTGATGTCTATCCAGTGGAGTCAT ATGAAAACTTCACAACAAATCAAATTCTTGATGCTCATTGGGGTGTCATGGCTGACGGTG ATCCAACAGGGCTTTGTTCACATTCTTTGTCCATTTTGGTGAATGATTTCCCTGGAGTTC TCAATGTTGTAACAGGTGTTTTCTCCCGAAGAGGCTACAATATTCAGAGTCTGGCTGTTG GCCCAGCTGAAAAAGAAGGCACTTCTCGGATCACTACTGTTGTCCCTGGAACTGATGAGT CTATTGCCAAGCTAGTACACCAACTGTATAAGCTCATTGATGTTTATGAGGTCCAGGATC TTACTCATTTACCATTTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCA CAGCCCGCAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTAT CAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAA GGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCC GTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTT GTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTG TTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAATAGTG GTCACAGTTTGTGTCAGTTGTATTAGAAAAGATTCAATAAAAGTATTTGAGTTGGCTCAA AATTGTTGTATCTGACCATTAAAGCTGTTTATTTTTCTAGTTCTTATATTGCATAGTTTC TGGCTTTCTGCGTAAAAAAAAAAAAAAAAAAAAACTCG



consensusID : consensus_12650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 662
fasta sequence
                              [CTTCCAGCGTCTTTCCACGAAGAGGGTCGAATTTCATGGTGTGGCCGTTGGGCCAGCTGAAAAAGAAGAACTTGCTCGGATCGGTGAATGTTGTACCAGGAACATGATGAGTCTATTGGCAAGGTTAGTCACCCAACAGTATAAGCTCATTGATGTTTATGAGGTCCAGGATGTTACTCATTTACCCTNTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCCCAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATCCCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTTGATTCAATTTTGTTCTTTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAACAGCGGTCACAGTTTGTGTCAGTTGTA-TTAGAAAAGATTCAATAAAAGTA-TTTGAGTTGGCTCAAAAAAAAAAA]

[-] EMBL CA759648             [CTTCCAGCGTCTTTCCACGAAGAGGGTCGAATTTCATGGTGTGGCCGTTGGGCCAGCTGAAAAAGAAGAACTTGCTCGGATCGGTGAATGTTGTACCAGGAACATGATGAGTCTATTGGCAAGGTTAGTCACCCAACAGTATAAGCTCATTGATGTTTATGAGGTCCAGGATGTTACTCATTTACCCTNTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCCCAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATCCCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTTGATTCAATTTTGTTCTTTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAACAGCGGTCACAGTTTGTGTCAGTTGTA TTAGAAAAGATTCAATAAAAGTA TTTGAGTTGGCTCAAAAAAAAAAA]
[+] EMBL BM420282             [                                                                                                                                                                                                                                                                                       ccgTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGATTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGC ATACCATAAGAAAATAGCGGTCACAGTTTGTGTCAGTTGTATTTAGAAAAGATTCAATAAAAGTACTTTGAGTTGGCTCCAAAAAAAAAA]


>consensus_12650#1 CTTCCAGCGTCTTTCCACGAAGAGGGTCGAATTTCATGGTGTGGCCGTTGGGCCAGCTGA AAAAGAAGAACTTGCTCGGATCGGTGAATGTTGTACCAGGAACATGATGAGTCTATTGGC AAGGTTAGTCACCCAACAGTATAAGCTCATTGATGTTTATGAGGTCCAGGATGTTACTCA TTTACCCTNTGCTGCTAGAGAGTTAATGATCATAAAGATTGCTGTAAACACCACAGCCCC CAGGGCTATCCTAGATATTGCTGATATTTTCCGGGCCAAAACTGTGGATGTATCAGATCA CACCGTAACTCTTCAGCTTACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCT CGAGCCCTATGGCATTTGTGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTC AGGAGTCGATTCCAAATCCCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTT GGCAAAGAGGTCATCCCCATCTTGTCATTTTGATTCAATTTTGTTCTTTTCTGTTAGAAT CACAATCTTGAAGTGATAGAATCATTCGAAAGCAATACAATAAGAAAACAGCGGTCACAG TTTGTGTCAGTTGTATTAGAAAAGATTCAATAAAAGTATTTGAGTTGGCTCAAAAAAAAA AA



consensusID : consensus_12650#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence
                              [GCNAGAAGAGGATACAACATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATTATTTACAATAGTAGTATCTGGAACTGAGAAAATNCTGTAACAGGTTGTAGAGCAACTAAACAAACTTTGTTAATGNTATACAGGTTGACGATCTGTCGNNGGATCCACAAGTTGAAAGAGAGCTAATGCTTATAAAACTAAATTGTTGAGCCAGATAAGCGACCGNGNGGTTGANTGGTNGCTTGGTTGACCATCTCCAGCGCAAAATTNTGGGTTGACCNTTTCN]

[+] EMBL D43208               [GCNAGAAGAGGATACAACATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATTATTTACAATAGTAGTATCTGGAACTGAGAAAATNCTGTAACAGGTTGTAGAGCAACTAAACAAACTTTGTTAATGNTATACAGGTTGACGATCTGTCGNNGGATCCACAAGTTGAAAGAGAGCTAATGCTTATAAAACTAAATTGTTGAGCCAGATAAGCGACCGNGNGGTTGANTGGTNGCTTGGTTGACCATCTCCAGCGCAAAATTNTGGGTTGACCNTTTCN]


>consensus_12650#2 GCNAGAAGAGGATACAACATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATTA TTTACAATAGTAGTATCTGGAACTGAGAAAATNCTGTAACAGGTTGTAGAGCAACTAAAC AAACTTTGTTAATGNTATACAGGTTGACGATCTGTCGNNGGATCCACAAGTTGAAAGAGA GCTAATGCTTATAAAACTAAATTGTTGAGCCAGATAAGCGACCGNGNGGTTGANTGGTNG CTTGGTTGACCATCTCCAGCGCAAAATTNTGGGTTGACCNTTTCN



consensusID : consensus_12650#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 111
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCCCACTCAAATACTTTTATTGAATCTTTTCTAATACAACTGACACAAACTGTTTTTACTCCTTTAATCCAT]

[+] EMBL CF299151             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCCCACTCAAATACTTTTATTGAATCTTTTCTAATACAACTGACACAAACTGTTTTTACTCCTTTAATCCAT]


>consensus_12650#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCCCACTCAAATACTTTTATT GAATCTTTTCTAATACAACTGACACAAACTGTTTTTACTCCTTTAATCCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12650#0      TCATGGCTACCGCCACCGCCGCCTCCCGCCTCGCGGTGGCCGGCGCTGAACCCGCTCGCG 60
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      CCCGGCGCCACCGCCCGACGACGGTGGCAGTCTGCGGGGGCGCGAGGCCGAGGTCGCGCC 120
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      CCGCGGCCGTCGTTGCCGCCGCCGGCGCCGCCGCTCCCTCTCCGGCCACCGGCGGCGTCG 180
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      CGCCGGTTCCGCCAAGCCCCAGGGGCTCGATTATAAAGCGTCATACACTATCAGTTTTTG 240
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TTGGAGATGAAAGTGGGATGATTAATCGAATTGCTGGAGTTTTTGCTAGAAGAGGATACA 300
consensus_12650#2      --------------------------------------------GCNAGAAGAGGATACA 16
consensus_12650#1      ------------------------------CTTCCAGCGTCTTTCCACGAAGAGGGTCGA 30
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      A---CATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATT---ATTTACAATAG 354
consensus_12650#2      A---CATTGAGTCATTGGCAGTTGGGCTGAACAAGGACAAGGCATT---ATTTACAATAG 70
consensus_12650#1      ATTTCATGGTGTGGCCGTTGGGCCAGCTGAAAAAGAAGAACTTGCTCGGATCGGTGAATG 90
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TAGTATCTGGAAC-TGA-GAAAATACTGAAACAGGTTGTAGAGCAACTAAACAAACTT-G 411
consensus_12650#2      TAGTATCTGGAAC-TGA-GAAAATNCTGTAACAGGTTGTAGAGCAACTAAACAAACTTTG 128
consensus_12650#1      TTGTACCAGGAACATGATGAGTCTATTGGCAAGGTTAGTCACCCAACAGTATAAGCTC-A 149
consensus_12650#3      -------------------------------------------TTTTTTTTTTTTTTTTT 17
                                                                               *   

consensus_12650#0      TTAATGTTATACAGGTTGACGATCTGTCGAAGGAACCACAAGTTGAAAGAGAGCTAATGC 471
consensus_12650#2      TTAATGNTATACAGGTTGACGATCTGTCGNNGGATCCACAAGTTGAAAGAGAGCTAATGC 188
consensus_12650#1      TTGATGTTTATGAGGTCCAGGATGTTACTCATTTACCCTNTGCTGCTAGAGAGTTAATGA 209
consensus_12650#3      TTTTTTTTTTTTTTTTTTTTGAGCCCACTCAAATACTTTTA-TTGAATCTTTTCTAATAC 76
                       **  *  *       *    **     *       *       **         ****  

consensus_12650#0      TTATAAAACTAAAT-GTTG-AGCCAGATAAGCGACCGGAGG--TGATGGGTT---TGGTT 524
consensus_12650#2      TTATAAAACTAAATTGTTG-AGCCAGATAAGCGACCGNGNGGTTGANTGGTNGCTTGGTT 247
consensus_12650#1      TCATAAAG----ATTGCTGTAAACACCACAGCCCCCAGGGCTATCCTAGATA---TTGCT 262
consensus_12650#3      AACTGACACAAACTGTTTTTACTCCTTTAATCCAT------------------------- 111
                          * *       *   *  *  *     * *                            

consensus_12650#0      GAC-ATCTTCAGAGCAAAGGTG---GTTGACCTTTCTGACCACACACTAACTATTGAGGT 580
consensus_12650#2      GACCATCTCCAGCGCAAAATTNTGGGTTGACCNTTTCN---------------------- 285
consensus_12650#1      GATATTTTCCGGGCCAAAACTG----TGGATGTATCAGATCACACCGTAACTCTTCAGCT 318
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      AACTGGAGATCCTGGAAAAATTGTTGCTGTACAGAGGAACCTAAGCAAATTTGGAATCAA 640
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      TACTGGAGACCTTGATAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTG 378
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      AGAAATTGCCAGAACTGGCAAGATAGCTTTGCGGCGTGAGAAAATGGGAGAAAGTGCTCC 700
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      TGAGGTTGCACGAACTGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATC 438
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TTTTTGGCGGTTCTCTGCAGCTTCCTATCCTGATCTTGAAGTGGCAATGCCATCAAAATC 760
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      CCTCCGTGGGTTTTCCCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCC 498
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TCATGTCAACACTGCGATGAAAACAGCTAACCAGAATTCTGAAGAATCTTCACAAGGTGA 820
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ATCTTGTCATTTTGATTCAATTTTGTTCTTTTCTGTTAGAATCACAATCTTGAAGTGATA 558
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TGTCTATCCAGTGGAGTCATATGAAAACTTCACAACAAATCAAATTCTTGATGCTCATTG 880
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      GAATCATTCGAAAGCAATACAATAAGAAAACAGCGGTCACAGTTTGTGTCAGTTGTATTA 618
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      GGGTGTCATGGCTGACGGTGATCCAACAGGGCTTTGTTCACATTCTTTGTCCATTTTGGT 940
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      GAAAAGATTCAATAAAAGTATTTGAGTTGGCTCAAAAAAAAAAA---------------- 662
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      GAATGATTTCCCTGGAGTTCTCAATGTTGTAACAGGTGTTTTCTCCCGAAGAGGCTACAA 1000
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TATTCAGAGTCTGGCTGTTGGCCCAGCTGAAAAAGAAGGCACTTCTCGGATCACTACTGT 1060
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TGTCCCTGGAACTGATGAGTCTATTGCCAAGCTAGTACACCAACTGTATAAGCTCATTGA 1120
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TGTTTATGAGGTCCAGGATCTTACTCATTTACCATTTGCTGCTAGAGAGTTAATGATCAT 1180
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      AAAGATTGCTGTAAACACCACAGCCCGCAGGGCTATCCTAGATATTGCTGATATTTTCCG 1240
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      GGCCAAAACTGTGGATGTATCAGATCACACCGTAACTCTTCAGCTTACTGGAGACCTTGA 1300
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TAAAATGGTCGCATTACAAAGGATGCTCGAGCCCTATGGCATTTGTGAGGTTGCACGAAC 1360
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TGGCAGGGTTGCGTTGCGCCGTGAGTCAGGAGTCGATTCCAAATACCTCCGTGGGTTTTC 1420
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      CCTTCCTCTGTAGTTTGTTTGTCAGTTGGCAAAGAGGTCATCCCCATCTTGTCATTTCGA 1480
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TTCAATTTTGTTCTCTTCTGTTAGAATCACAATCTTGAAGTGATAGAATCATTCGAAAGC 1540
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      AATACAATAAGAAAATAGTGGTCACAGTTTGTGTCAGTTGTATTAGAAAAGATTCAATAA 1600
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      AAGTATTTGAGTTGGCTCAAAATTGTTGTATCTGACCATTAAAGCTGTTTATTTTTCTAG 1660
consensus_12650#2      ------------------------------------------------------------
consensus_12650#1      ------------------------------------------------------------
consensus_12650#3      ------------------------------------------------------------
                                                                                   

consensus_12650#0      TTCTTATATTGCATAGTTTCTGGCTTTCTGCGTAAAAAAAAAAAAAAAAAAAAACTCG 1718
consensus_12650#2      ----------------------------------------------------------
consensus_12650#1      ----------------------------------------------------------
consensus_12650#3      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)