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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 602 fasta sequence
[TCCCGAAATNCCTCGACCCTCGTGCAGACAGCTCCTCC-TCCCCCATC-GGCCATGGCGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGT-CGTCGGCAGCCACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGCGTCAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC-AAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCAC-TGAGAAGACAAGATGCAGTCCTTCACCACACTGAAA-TTTGGAATTGAATGTGTGTATTT-GGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATG-ATATCTTTGAC-GATCATCGTA-CTTTGAATGACATAAT-AATG-CCCGCTTTAATAACAGTGGATTTCTTTTTCTTTAAAAAAAAAAAA]
[+] EMBL AU095400 [TCCCGAAATNCCTCGACCCTCGTGCAGACAGCTCCTCC TCCCCCATC GGCCATGGCGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGT CGTCGGCAGCCACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGCGTCAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC AAGTACTGTGGTCTCCGNTTTG ]
[+] EMBL C27792 [ CGAAATCCCTCGACCCTCGTGCAGACAGCTCCTCC TCCCCCATC GGCCATGGCGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGG GCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCG CGCCGTACGTCGGCAGCCACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCA TACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTAATGGGCGTCAGGATAAAGGTCGTG AANTGGTTCCCTCGGCCATNCGATCGAATATATCTGCCTTGACCTGGACCAGCCTNCTGTATG AAGTACTNTGGgtt ]
[+] EMBL C73734 [ CGTGCAGACAGCTCCTCC TNCCCCATC GGCCATGGCGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGT CGTCGGCAGCCACANCGCCAAGTGGATGCAGGACACANGCAAGAAGTCCCCAATGGAATTGATCANCGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGCGTCAGGATAAAGGTCGTGAACTTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTNCTGTATGCAAAGTACTNTGGTCTCCGTTTTGTTCAAGATCAACATCACTTGGGAAGCAAAGATTCAGTCCTTCACCANACTGAAATTTTGGAATTGAATGT ]
[+] EMBL AK059272 [ GCTCCTCC TCCCCCATC GGCCATGGCGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGT CGTCGGCAGCCACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGCGTCAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC AAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCAC TGAGAAGACAAGATGCAGTCCTTCACCACACTGAAA TTTGGAATTGAATGTGTGTATTT GGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATG ATATCTTTGAC GATCATCGTA CTTTGAATGACATAAT AATG CCCGCTTTAATAACAGTGGATTT ]
[+] EMBL AU092684 [ gctTCTTCCTTCCCCCATCGGGCCATGGCGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGANA GGCGGTCGGCGCCGCCGCCGT CGTCGGCAGCCACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGCGTCAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC AAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCAC TGAGAAGACAAGATGCAGTCCTTCACCACACTGAAA TTTGGAATTGAATGTGTGTATTT GGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATG ATATCTTTGAC GATCATCGTA CTTTGAATGACATAAT AATG CCCGCTTTAATAACAGTGGATTTCTTTTTCTTTAAAAAAAAAAAA]
[+] EMBL OSC26541 [ CGACCGCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGT CGTCGGCAGCCACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTAATGGGCGTCAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC AAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCAC TGAGAAGACAAGATG ]
[+] EMBL C74348 [ ACGTCTGCNCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCCGCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGT CGTCGGCAGCNACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGCGTTAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC AAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCAC TGANAAGACAAGATGCAGTCCTTCACCACACTGAAA TTTGGAATTGAATGTGTNTATTT GGTTT AAATGTTCCAGTAAGCGTGTtaaagta ]
[+] EMBL C27487 [ CACACCGCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCTCCGATCAAGGTTGAAGGACGAATTGCTGCTTGTAATGGGCGTCAGGATAAAGGTCGTGAAACTGGTTCCCTCGGCCATCCGATCGAATATATCTGCCTTGACCTGGACCAGCCTGCTGTATGC AAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCAC TGAGAAGACAAGATGCAGTCCTTCACCACACTGAAA TTTGGAATTGAATGTGTGTATTTGGGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATGNNTATCTTTGACGGTTCATCGTACCTTTGAATGACATAATAAATGCCCCGTTTTAATAACc ]
consensusID : consensus_12668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[ATGGNCGTCAGGATAAAGGTCGTGAAACTGGTNCCCTCGGCCATCCCGATCGAATATATCTNCCTTGACCTGGACCAGCCTGCTGTATGCAAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCACTGAGAAGACAAGATGCAGTCCTTCACCACACTGAAATTTGGAATTGAATGTGTGTATTTGGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATAATGCCCGCTTTAATAACAGTGGATTTCTTTTTCTTTAGTTGGCATCTGTTGCATTTTCTGAGTCTATGCAATTTCTGTATCTAATTACCCGCTCTGCGAATCTGACAACCTGAGATCAAAATTGAATCAATTGCGAAACTAGTTTAGTTATAAAAAAAAAAAAAA]
[+] EMBL AU031564 [ATGGNCGTCAGGATAAAGGTCGTGAAACTGGTNCCCTCGGCCATCCCGATCGAATATATCTNCCTTGACCTGGACCAGCCTGCTGTATGCAAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCACTGAGAAGACAAGATGCAGTCCTTCACCACACTGAAATTTGGAATTGAATGTGTGTATTTGGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATAATGCCCGCTTTAATAACAGTGGATTTCTTTTTCTTTAGTTGGCATCTGTTGCATTTTCTGAGTCTATGCAATTTCTGTATCTAATTACCCGCTCTGCGAATCTGACAACCTGAGATCAAAATTGAATCAATTGCGAAACTAGTTTAGTTATAAAAAAAAAAAAAA]
consensusID : consensus_12668#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[CGCTCATGGGGGTTCATGAATCGCACAACGGGCAGTCCAGCGTTGGGTTTTCACACTTCTGGCACAATTCACGATCACGAATGATGATGCTGGCACTTGGAGCCTGGGAGCCAAGCACTGGCTGTGATGGCAAAGTGACTGTGGTGCTGCACAGTTGTTGGTTCAAGATGCAACCATGCAACTGGAGAAGACCAAGATGGCAAGTGCCTTGCACCACACTGGAAGATGTTGGGAATTGGAATGGTGGGGTGATTTGGGTGTGTGAAAATGGTTCCAGTCAGCGTGTCATGTATTCGGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGCAGGACATAATAATGCCCGCTTTAATAAA]
[+] EMBL BI802785 [CGCTCATGGGGGTTCATGAATCGCACAACGGGCAGTCCAGCGTTGGGTTTTCACACTTCTGGCACAATTCACGATCACGAATGATGATGCTGGCACTTGGAGCCTGGGAGCCAAGCACTGGCTGTGATGGCAAAGTGACTGTGGTGCTGCACAGTTGTTGGTTCAAGATGCAACCATGCAACTGGAGAAGACCAAGATGGCAAGTGCCTTGCACCACACTGGAAGATGTTGGGAATTGGAATGGTGGGGTGATTTGGGTGTGTGAAAATGGTTCCAGTCAGCGTGTCATGTATTCGGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGCAGGACATAATAATGCCCGCTTTAATAAA]
consensusID : consensus_12668#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[GACCAGCCTGCTGTATGCAAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCACTGAGAAGACAAGATGCAGTCCTTCACCACACTGAAATTTGGAATTGAATGTGTGTATTTGGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATAATGCCCGCTTTAATAAAAAAAAAAAAA]
[-] EMBL CA758730 [GACCAGCCTGCTGTATGCAAGTACTGTGGTCTCCGTTTTGTTCAAGATCACCATCACTGAGAAGACAAGATGCAGTCCTTCACCACACTGAAATTTGGAATTGAATGTGTGTATTTGGTTTAAAATGTTCCAGTCAGCGTGTCATGTATTCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATAATGCCCGCTTTAATAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12668#0 TCCCGAAATNCCTCGACCCTCGTGCAGACAGCTCCTCCTCCCCCATCGGCCATGGCGACC 60
consensus_12668#1 ------------------------------------------------------------
consensus_12668#3 ------------------------------------------------------------
consensus_12668#2 ------------------------------------------------------------
consensus_12668#0 GCCGCGAGACGTCTGCTCCTCCCGGCGCTCCGCAAGTCCCTACCCGCGGCCAACGGCGCC 120
consensus_12668#1 ------------------------------------------------------------
consensus_12668#3 ------------------------------------------------------------
consensus_12668#2 ------------------------------------------------------------
consensus_12668#0 GCGCGAGGCGTCTCCACGGAGAGGGCGGTCGGCGCCGCCGCCGTCGTCGGCAGCCACACC 180
consensus_12668#1 ------------------------------------------------------------
consensus_12668#3 ------------------------------------------------------------
consensus_12668#2 ------------------------------------------------------------
consensus_12668#0 GCCAAGTGGATGCAGGACACAAGCAAGAAGTCCCCAATGGAATTGATCAACGCAGTACCT 240
consensus_12668#1 ------------------------------------------------------------
consensus_12668#3 ------------------------------------------------------------
consensus_12668#2 ------------------------------------------------------------
consensus_12668#0 CCGATCAAGGTTGAAGGACGAATTGCTGCTTGTGATGGGC-GTCAGGATAAAGGTCGTGA 299
consensus_12668#1 ----------------------------------ATGGNC-GTCAGGATAAAGGTCGTGA 25
consensus_12668#3 ------------------------------------------------------------
consensus_12668#2 -------CGCTCATGGGGGTTCATGAATCGCACAACGGGCAGTCCAGCGTTGGGTTTTCA 53
consensus_12668#0 AACT---GGTTCCCTCGGCCATCC-GATCGAATATATCTGC-CTTGA--CCTGGA--CCA 350
consensus_12668#1 AACT---GGTNCCCTCGGCCATCCCGATCGAATATATCTNC-CTTGA--CCTGGA--CCA 77
consensus_12668#3 -----------------------------------------------------GA--CCA 5
consensus_12668#2 CACTTCTGGCACAATTCACGATCACGAATGATGATGCTGGCACTTGGAGCCTGGGAGCCA 113
* ***
consensus_12668#0 G---CCTGCTGT-ATGC--AAGT-ACTGTGGT-CTCCGT-----TTTGTTCAAGATC--A 395
consensus_12668#1 G---CCTGCTGT-ATGC--AAGT-ACTGTGGT-CTCCGT-----TTTGTTCAAGATC--A 122
consensus_12668#3 G---CCTGCTGT-ATGC--AAGT-ACTGTGGT-CTCCGT-----TTTGTTCAAGATC--A 50
consensus_12668#2 AGCACTGGCTGTGATGGCAAAGTGACTGTGGTGCTGCACAGTTGTTGGTTCAAGATGCAA 173
* ***** *** **** ******** ** * ** ********* *
consensus_12668#0 CCATC--ACTG-AGAAGAC-AAGATG-CA---GTCCTTCACCACACTGAAA----TTTGG 443
consensus_12668#1 CCATC--ACTG-AGAAGAC-AAGATG-CA---GTCCTTCACCACACTGAAA----TTTGG 170
consensus_12668#3 CCATC--ACTG-AGAAGAC-AAGATG-CA---GTCCTTCACCACACTGAAA----TTTGG 98
consensus_12668#2 CCATGCAACTGGAGAAGACCAAGATGGCAAGTGCCTTGCACCACACTGGAAGATGTTGGG 233
**** **** ******* ****** ** * * * ********** ** ** **
consensus_12668#0 AATTGAATGTGTGT----ATTTGGTTT----AAAATG-TTCCAGTCAGCGTGTCATGTAT 494
consensus_12668#1 AATTGAATGTGTGT----ATTTGGTTT----AAAATG-TTCCAGTCAGCGTGTCATGTAT 221
consensus_12668#3 AATTGAATGTGTGT----ATTTGGTTT----AAAATG-TTCCAGTCAGCGTGTCATGTAT 149
consensus_12668#2 AATTGGAATGGTGGGGTGATTTGGGTGTGTGAAAATGGTTCCAGTCAGCGTGTCATGTAT 293
***** * *** ****** * ****** **********************
consensus_12668#0 TCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATA 554
consensus_12668#1 TCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATA 281
consensus_12668#3 TCTGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGAATGACATAATA 209
consensus_12668#2 TCGGCCTGATGGCAAGATGATGATATCTTTGACGATCATCGTACTTTGCAGGACATAATA 353
** ********************************************* * *********
consensus_12668#0 ATGCCCGCTTTAATAACAGTGGATTTCTTTTTCTTTAAAAAAAAAAAA------------ 602
consensus_12668#1 ATGCCCGCTTTAATAACAGTGGATTTCTTTTTCTTTAGTTGGCATCTGTTGCATTTTCTG 341
consensus_12668#3 ATGCCCGCTTTAATAAAAAAAAAAAAA--------------------------------- 236
consensus_12668#2 ATGCCCGCTTTAATAAA------------------------------------------- 370
****************
consensus_12668#0 ------------------------------------------------------------
consensus_12668#1 AGTCTATGCAATTTCTGTATCTAATTACCCGCTCTGCGAATCTGACAACCTGAGATCAAA 401
consensus_12668#3 ------------------------------------------------------------
consensus_12668#2 ------------------------------------------------------------
consensus_12668#0 ---------------------------------------------
consensus_12668#1 ATTGAATCAATTGCGAAACTAGTTTAGTTATAAAAAAAAAAAAAA 446
consensus_12668#3 ---------------------------------------------
consensus_12668#2 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||