These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTGACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTTCGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTAACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCGTGGCGAGTTTATCCCTCTCGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTTTTATCTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACATGAATCTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAGTAGTAGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA] [+] EMBL AK108722 [CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTGACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTTCGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTAACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCGTGGCGAGTTTATCCCTCTCGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTTTTATCTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACATGAATCTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAGTAGTAGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA] consensusID : consensus_1267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CGAGCTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGGCGGCGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGGCAACCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGTGTTCACGGTACAACAAGSAGGCTCCACAACGGT] [+] EMBL AA752388 [CGAGCTTCGCTCTCTACTCCTCTCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGGCGGCGGCGGCGGCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGGCAACCCCAACTACACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGTGTTCACGGTACAACAAGSAGGCTCCACAACGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1267#0 CGGCGCCGCGATGATAAAAGGCGAGAGAAATTTACCCACGAGTCGCTCGCGCGGTGACTG 60 consensus_1267#1 ------------------------------------------------------------ consensus_1267#0 ACACACCGTGGCGATGACACACGCCGAAAGGAAAGCTTGGCCGCGGCGCGGGGGCATTTT 120 consensus_1267#1 ------------------------------------------------------------ consensus_1267#0 CGGGAGGAGACACGACCACGACCCCACGAGGGGATCGAAAAGTTGCGGAGCTTTTATTTA 180 consensus_1267#1 ------------------------------------------------------------ consensus_1267#0 ACCGGCCGGTTTGTGCCATTCTCGCCACTGTCCTAACCTGCACTTCGCTCTCTACTCCTC 240 consensus_1267#1 --------------------------------------CGAGCTTCGCTCTCTACTCCTC 22 * ****************** consensus_1267#0 TCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGTG 300 consensus_1267#1 TCGCTCTCGGTCATGGGTGGTGGTGCGGCGGCGAGCAGGGTGTCGTCGGCCATGGCCGT- 81 *********************************************************** consensus_1267#0 GCGGTGGCGGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGACGGCGGCGGCG 360 consensus_1267#1 --------GGCGGCGGCGGCGTTGGTGGTGATGTGGGCGGGGACGGCGGCGGCGGCGGCG 133 **************************************** *********** consensus_1267#0 GC---CGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCATGGGCAGCCCCAACTAC 417 consensus_1267#1 GCGGCCGTGTACGAGGTGGGCGACAAGACCGGGTGGACCATCTTGGGCAACCCCAACTAC 193 ** ************************************* ****** ********** consensus_1267#0 ACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCGGTACGTACGTTTCG 477 consensus_1267#1 ACAGCCTGGGCCGCCTCCAAGAAGTTCCATCTCGGCGACACCGTCG---TGTTCACGGTA 250 ********************************************** ** * consensus_1267#0 TGGCGAGTTTATCCCTCT-CGCTCACGCGTTCTCCGCTCCTCCTGCTGCATTCCGGCGTT 536 consensus_1267#1 CAACAAGSAGGCTCCACAACGGT------------------------------------- 273 * ** ** * ** * consensus_1267#0 TTATCTCCTCAGAAACATTGGTGCGAACGACACACGTTTGTAGTTTTGTTGCTTGAACAT 596 consensus_1267#1 ------------------------------------------------------------ consensus_1267#0 GAATCTTGCCATGTGCAAGACTGCAAGTGCAAGTTCGTTGTTGAGACAAAATCTAGTAAG 656 consensus_1267#1 ------------------------------------------------------------ consensus_1267#0 TAGTAGCCTTTTATCAGACGAATCAGTCACAGAGAAGAAGGGAAAAGAA 705 consensus_1267#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||