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Oryza sativa
cluster # 12673 cluster # 12673       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12673#0 length = 1495 sequences # 8  
consensus_12673#1 length = 675 sequences # 1  
consensus_12673#2 length = 291 sequences # 1  
consensus_12673#3 length = 269 sequences # 1  

consensusID : consensus_12673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1495
fasta sequence
                              [CGTCCTCCTCTCCGGCTCGATCTCCCACCGCGGCGGCGACTCCAGATCGGCGGCGAAGCCCAGGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCGTAAAAGAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTCCGCTCCTCGCGCCGCCGCCAAGACGAGTCGCGGGGGAGGGGCGGCGATCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGTGAGTATCCATCCGCATCCTCTTTCTGATTCATCTCTCTCTCCCACCCCACCGGGACTACTTATGTCTGGAATTTTGCTTGCGTTCGTTAACCCTAGTAGCTTCTCTTCTAGATCTGGAAGGAGCTCTTCTCCTCCTCCTTAATTTGAGAGCCCTAAACCTCTCTTAATACAACTAGTAGTAACAGTTTGGGGGTTCAATTCAACTCAACCCCCATGTCCCAAGTTGGATCCACCCCTGTTGCTATTAGGGTTACGGAGTTGGCAAAGATAATATGGTGGCATATGTTTGCGCTAGAGTCGAATCCCTTTCGCAATGTGCACTAGCATCGAACTCCATGACCAGGAGCAAGAACCAAGTCATTATCTTGAATGGGGATAATATCTTACATTCTGAAAAAAATAGTTTGTGTGTTTGCACACTCTGATAATTAGATTTGCTTGAGGAGCACCTTAAGTAGTAGTATTCCACATAGTGCTAAGTGCTGATCTATCCTATTGAATTGCCTGCTATATTGTTTTGAGAATGAATTATATGTTTATGATTATGCTTTAGTAAAATTTCTCACTTGAGTTGCATTGTTCAGGGAGGAGTGACCGGAGGGAATGCAAGACCCAAGAGGTATGCCACGAGATGAATTCGCAACCCCGAAGACGCACAAGAGAAAGGTCGTTTCCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGCTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAAGAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGAGTTCGGTCCAG-CTGATGAA-TACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAACATTTAGAGCACTTGTTTGGAGTTCTTTTTGTGCAATATGAAAGAGTGCTATCAGTTTAACTGAAATTTAATCGTGGCAAAA]

[+] EMBL AK101237             [CGTCCTCCTCTCCGGCTCGATCTCCCACCGCGGCGGCGACTCCAGATCGGCGGCGAAGCCCAGGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCGTAAAAGAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTCCGCTCCTCGCGCCGCCGCCAAGACGAGTCGCGGGGGAGGGGCGGCGATCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGTGAGTATCCATCCGCATCCTCTTTCTGATTCATCTCTCTCTCCCACCCCACCGGGACTACTTATGTCTGGAATTTTGCTTGCGTTCGTTAACCCTAGTAGCTTCTCTTCTAGATCTGGAAGGAGCTCTTCTCCTCCTCCTTAATTTGAGAGCCCTAAACCTCTCTTAATACAACTAGTAGTAACAGTTTGGGGGTTCAATTCAACTCAACCCCCATGTCCCAAGTTGGATCCACCCCTGTTGCTATTAGGGTTACGGAGTTGGCAAAGATAATATGGTGGCATATGTTTGCGCTAGAGTCGAATCCCTTTCGCAATGTGCACTAGCATCGAACTCCATGACCAGGAGCAAGAACCAAGTCATTATCTTGAATGGGGATAATATCTTACATTCTGAAAAAAATAGTTTGTGTGTTTGCACACTCTGATAATTAGATTTGCTTGAGGAGCACCTTAAGTAGTAGTATTCCACATAGTGCTAAGTGCTGATCTATCCTATTGAATTGCCTGCTATATTGTTTTGAGAATGAATTATATGTTTATGATTATGCTTTAGTAAAATTTCTCACTTGAGTTGCATTGTTCAGGGAGGAGTGACCGGAGGGAATGCAAGACCCAAGAGGTATGCCACGAGATGAATTCGCAACCCCGAAGACGCACAAGAGAAAGGTCGTTTCCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGCTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAAGAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGAGTTCGGTCCAG CTGATGAA TACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAACATTTAGAGCACTTGTTTGGAGTTCTTTTTGTGCAATATGAAAGAGTGCTATCAGTTTAACTGAAATTTAATCGTGGCAAAA]
[+] EMBL CB619205             [                                         CCAGATCGGCGGCGAAGCCCAGGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCGTAAAAGAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTCCGCTCCTCGCGCCGCCGCCAAGACGAGTCGCGGGGGAGGGGCGGCGATCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGGTGAGTATCCATCCGCATCCTCTTTCTGATTCATCTCTCTCTCCCACCCCACCGGGACTACTTATGTCTGGAATTTTGCTTGCGTTCGTTAACCCTAGTAGCTTCTCTTCTAGATCTGGAAGGAGCTCTTCTCCTCCTCCTTAATTTGAGAGCCCTAAACCTCTCTTAATACAACTAGTAGTAACAGTTTGGGGGTTCAATTCAACTCAACCCCCATGTCCCAAGTTGGATCCGCCCCTGTTGCTATTAGGGTTACGGAGTTGGCAAAGATAATATGGTGGCATATGTTTGCGCTAGAGTCGAATCCCTTTCGCAATGTGCACTAGCATCGAACTCCATGACCAGGAGCAAGAACCAAGTCATTATCTTGAATGGGGATAATATCTTACATTCTGAAAAAAATAGTTTGTGTGTTTGCACACTCTGATAATTAGATTTGCTTGAGGAGCACCTTAAGTAGTAGTATTCCACATAGTGCTAAGTGCTGATCTATCCTATTGAATTGCCTGCTATATTGTTTTGAGAATGAATTATATGTTTATGATTATGCTTTAGTAAAATTTCTCACTTGAGTTGCATTGTTCAGGGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB967162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GACGCACAAGAGAAAGGTCGTTTCCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGCTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAAGAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGAGTTCGGTCCAG CTGATGAA TACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACC ATTGTAATGGAAGAGC AAGACATATTATATCGTTTATTATGGAAGTTTGAAC                                                                                 ]
[-] EMBL BI306000             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGCACAAGAGAAAGGTCGTTTCCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGCTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCTTAAGATAACCTTCAAGAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGAGTTCGGTCCAG CTGATGAA TACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAAC                                                                                 ]
[+] EMBL BM421100             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGAGTTCGGTCCAGTCTGATGAA TACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAACATTTAGAGCACTTGTTTGGAGTTCTTTTTGTGCAAaaaa                                          ]
[-] EMBL BI305966             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTAGGTGCCAGAGTTCGGTCCAG CTGATGAACCAC GAGCGTCACGCAAGAAGTACCTGCTGCTGGAGGATGACAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAAC                                                                                 ]
[+] EMBL CB684572             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTGCTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAAATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGGAAGTTTGAA                                                                                  ]
[-] EMBL D42668               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        nnTCTATGCGTGTTCGTTGCCTGTTCATAGT NNATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACATATTATATCGTTTATTATGG                                                                                           ]


>consensus_12673#0 CGTCCTCCTCTCCGGCTCGATCTCCCACCGCGGCGGCGACTCCAGATCGGCGGCGAAGCC CAGGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCG TAAAAGAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTCCGCTCCTCGCGCCGCCGCCA AGACGAGTCGCGGGGGAGGGGCGGCGATCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGG TGAGTATCCATCCGCATCCTCTTTCTGATTCATCTCTCTCTCCCACCCCACCGGGACTAC TTATGTCTGGAATTTTGCTTGCGTTCGTTAACCCTAGTAGCTTCTCTTCTAGATCTGGAA GGAGCTCTTCTCCTCCTCCTTAATTTGAGAGCCCTAAACCTCTCTTAATACAACTAGTAG TAACAGTTTGGGGGTTCAATTCAACTCAACCCCCATGTCCCAAGTTGGATCCACCCCTGT TGCTATTAGGGTTACGGAGTTGGCAAAGATAATATGGTGGCATATGTTTGCGCTAGAGTC GAATCCCTTTCGCAATGTGCACTAGCATCGAACTCCATGACCAGGAGCAAGAACCAAGTC ATTATCTTGAATGGGGATAATATCTTACATTCTGAAAAAAATAGTTTGTGTGTTTGCACA CTCTGATAATTAGATTTGCTTGAGGAGCACCTTAAGTAGTAGTATTCCACATAGTGCTAA GTGCTGATCTATCCTATTGAATTGCCTGCTATATTGTTTTGAGAATGAATTATATGTTTA TGATTATGCTTTAGTAAAATTTCTCACTTGAGTTGCATTGTTCAGGGAGGAGTGACCGGA GGGAATGCAAGACCCAAGAGGTATGCCACGAGATGAATTCGCAACCCCGAAGACGCACAA GAGAAAGGTCGTTTCCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGCT GCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAA GAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAGA GTTCGGTCCAGCTGATGAATACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGA GAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGA TGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACA GATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCA ATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAA GACATATTATATCGTTTATTATGGAAGTTTGAACATTTAGAGCACTTGTTTGGAGTTCTT TTTGTGCAATATGAAAGAGTGCTATCAGTTTAACTGAAATTTAATCGTGGCAAAA



consensusID : consensus_12673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence
                              [AGGTCCAATGCGGGCCCGGACCCCCCCCTGAACGTGGGCGGGATGCGATAGCGCTTGATAGAGGCCCACTCAAGGGGCGGAATGCAAAGACCCAAGAGGTATGCCTCGAGATGAAATTCGCAACCCCGAAGACGCCCAAGAGAAAGGTCGTTTTCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGTTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAAGAATGAACCTCGCCATTTGGCTCCGCAATCTGATTGGGGAACCCCCGACTCGGTGCCAGAGTTCGGTCCAGCTGATGAATACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACGTATTATATCGTTTATTATGGAAGTTTGAACATTTAGAGCAAAAAAAAAAAAA]

[-] EMBL CA759918             [AGGTCCAATGCGGGCCCGGACCCCCCCCTGAACGTGGGCGGGATGCGATAGCGCTTGATAGAGGCCCACTCAAGGGGCGGAATGCAAAGACCCAAGAGGTATGCCTCGAGATGAAATTCGCAACCCCGAAGACGCCCAAGAGAAAGGTCGTTTTCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGTTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCAAGAATGAACCTCGCCATTTGGCTCCGCAATCTGATTGGGGAACCCCCGACTCGGTGCCAGAGTTCGGTCCAGCTGATGAATACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCAATTGTAATGGAAGAGCAAAGACGTATTATATCGTTTATTATGGAAGTTTGAACATTTAGAGCAAAAAAAAAAAAA]


>consensus_12673#1 AGGTCCAATGCGGGCCCGGACCCCCCCCTGAACGTGGGCGGGATGCGATAGCGCTTGATA GAGGCCCACTCAAGGGGCGGAATGCAAAGACCCAAGAGGTATGCCTCGAGATGAAATTCG CAACCCCGAAGACGCCCAAGAGAAAGGTCGTTTTCCGCCCCTTGCCTCCCAGCCAAATAA AAGCTGAACCTGAGCTGTTGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAG CCCCTAAGATAACCTTCAAGAATGAACCTCGCCATTTGGCTCCGCAATCTGATTGGGGAA CCCCCGACTCGGTGCCAGAGTTCGGTCCAGCTGATGAATACAGAGCGTTACGGAAGAAGT ACCTGCTGCTGGAGGATGAGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGG AAGCCAGCGTTCTCGAGGATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAG GCCTTGTGGATCCTTCACAGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTC GTTGCCTGTTCATAGTCCAATTAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCA ATTGTAATGGAAGAGCAAAGACGTATTATATCGTTTATTATGGAAGTTTGAACATTTAGA GCAAAAAAAAAAAAA



consensusID : consensus_12673#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence
                              [AGCAATTNAGCCAGGCTNAAGAGGAAGCCAGCGTTNTCGAGGATNAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCCCAGATGCAGCCCCCGAGAAGGCTGTGAGATTCTATGNGTGTTCGTTGCCTGTTCATAGTCCAATTAAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCCAATTGTAATGGAAGAGCAAAAGACCATNTTATNTNCGTTTNTTATGGAAGTTTNAACCTTTANAGCCCNAAAAAAAAAAAAAAANA]

[+] EMBL AU166928             [AGCAATTNAGCCAGGCTNAAGAGGAAGCCAGCGTTNTCGAGGATNAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCCCAGATGCAGCCCCCGAGAAGGCTGTGAGATTCTATGNGTGTTCGTTGCCTGTTCATAGTCCAATTAAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCCAATTGTAATGGAAGAGCAAAAGACCATNTTATNTNCGTTTNTTATGGAAGTTTNAACCTTTANAGCCCNAAAAAAAAAAAAAAANA]


>consensus_12673#2 AGCAATTNAGCCAGGCTNAAGAGGAAGCCAGCGTTNTCGAGGATNAAAAGTTTGCGCTGC TGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCCCAGATGCAGCCCCCGAGAA GGCTGTGAGATTCTATGNGTGTTCGTTGCCTGTTCATAGTCCAATTAAAGTTACCTGTTA CTGCTTCCTGCTAGATATGTAACCCAATTGTAATGGAAGAGCAAAAGACCATNTTATNTN CGTTTNTTATGGAAGTTTNAACCTTTANAGCCCNAAAAAAAAAAAAAAANA



consensusID : consensus_12673#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence
                              [CGTNCTCCGGNTTGCNATGCCACCGCGGCGGCGACTCCAGATCGGCGGCGAACCAGTGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCGTAAAANAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTNCGCTCCTCGNGCCGCCGCCAAGACGAGTCGCGGGGNAGTGGCGGCGATCGNNCAGAGCAGTGGAGNGNAGGGGATCCTGGGAGGAGTNACCGGAGGGAATGCAAGACCCANGTGG]

[+] EMBL AU069246             [CGTNCTCCGGNTTGCNATGCCACCGCGGCGGCGACTCCAGATCGGCGGCGAACCAGTGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCGTAAAANAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTNCGCTCCTCGNGCCGCCGCCAAGACGAGTCGCGGGGNAGTGGCGGCGATCGNNCAGAGCAGTGGAGNGNAGGGGATCCTGGGAGGAGTNACCGGAGGGAATGCAAGACCCANGTGG]


>consensus_12673#3 CGTNCTCCGGNTTGCNATGCCACCGCGGCGGCGACTCCAGATCGGCGGCGAACCAGTGAT CTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCGTAAAAN AAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTNCGCTCCTCGNGCCGCCGCCAAGACGA GTCGCGGGGNAGTGGCGGCGATCGNNCAGAGCAGTGGAGNGNAGGGGATCCTGGGAGGAG TNACCGGAGGGAATGCAAGACCCANGTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      CGTCCTCCTCTCCGGCTCGATCTCCCACCGCGGCGGCGACTCCAGATCGGCGGCGAAGCC 60
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      CAGGATCTCCGGCGAGGGCAGGAGAATGTCGAGATAAAGGTGGAGTAGTCGAGTATCGCG 120
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TAAAAGAAAGAGAAATCTCTCCCCGTCTCGTTGTCTCCTCCGCTCCTCGCGCCGCCGCCA 180
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      AGACGAGTCGCGGGGGAGGGGCGGCGATCGAGCAGAGCAGGGGAGGGGAGGGGATCCTGG 240
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TGAGTATCCATCCGCATCCTCTTTCTGATTCATCTCTCTCTCCCACCCCACCGGGACTAC 300
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TTATGTCTGGAATTTTGCTTGCGTTCGTTAACCCTAGTAGCTTCTCTTCTAGATCTGGAA 360
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      GGAGCTCTTCTCCTCCTCCTTAATTTGAGAGCCCTAAACCTCTCTTAATACAACTAGTAG 420
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TAACAGTTTGGGGGTTCAATTCAACTCAACCCCCATGTCCCAAGTTGGATCCACCCCTGT 480
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TGCTATTAGGGTTACGGAGTTGGCAAAGATAATATGGTGGCATATGTTTGCGCTAGAGTC 540
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      GAATCCCTTTCGCAATGTGCACTAGCATCGAACTCCATGACCAGGAGCAAGAACCAAGTC 600
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      ATTATCTTGAATGGGGATAATATCTTACATTCTGAAAAAAATAGTTTGTGTGTTTGCACA 660
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------------------------
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      CTCTGATAATTAGATTTGCTTGAGGAGCACCTTAAGTAGTAGTATTCCACATAGTGCTAA 720
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      ------------------------------------------AGGTCCAATGCGGGCCCG 18
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      GTGCTGATCTATCCTATTGAATTGCCTGCTATATTGTTTTGAGAATGAATTATATGTTTA 780
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      GACCCCCCCCTGAACGTGGGCGGGATGCGATAGCGCTTGATAGAGGCCCACTCAAGGGGC 78
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TGATTATGCTTTAGTAAAATTTCTCACTTGAGTTGCATTGTTCAGGGAGGAGTGACCGGA 840
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      GGAATGCAAAGACCCAAGAGGTATGCCTCGAGATGAAATTCGCAACCCCGAAGACGCCCA 138
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      GGGAATGCAAGACCCAAGAGGTATGCCACGAGATGAA-TTCGCAACCCCGAAGACGCACA 899
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      AGAGAAAGGTCGTTTTCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGT 198
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      AGAGAAAGGTCGTTTCCCGCCCCTTGCCTCCCAGCCAAATAAAAGCTGAACCTGAGCTGC 959
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      TGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCA 258
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      TGCGGAGGGAGGTTCCACTCACATCCGGCAAGACCAAGAAAGCCCCTAAGATAACCTTCA 1019
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      AGAATGAACCTCGCCATTTGGCTCCGCAATCTGATTGGGGAACCCCCGACTCGGTGCCAG 318
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      AGAATGAACCTCGCCATTCGGCTCCGCAATCTGATTGGGGAACCCCCGATTCGGTGCCAG 1079
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      AGTTCGGTCCAGCTGATGAATACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATG 378
consensus_12673#2      ------------------------------------------------------------
consensus_12673#0      AGTTCGGTCCAGCTGATGAATACAGAGCGTTACGGAAGAAGTACCTGCTGCTGGAGGATG 1139
consensus_12673#3      ------------------------------------------------------------
                                                                                   

consensus_12673#1      AGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGG 438
consensus_12673#2      ------------------AGCAATTNAGCCAGGCTNAAGAGGAAGCCAGCGTTNTCGAGG 42
consensus_12673#0      AGAACGGTGAGCTGGACAAGCAATTGAGCCAGGCTGAAGAGGAAGCCAGCGTTCTCGAGG 1199
consensus_12673#3      -----------------------CGTNCTCCGGNTTGCNATGCCACC-GCGGCGGCGACT 36
                                                    * ** *    * *   ** ***    ***  

consensus_12673#1      ATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCAC 498
consensus_12673#2      ATNAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCCC 102
consensus_12673#0      ATGAAAAGTTTGCGCTGCTGGATCAGCTTGTTGTGTTGGAAGGCCTTGTGGATCCTTCAC 1259
consensus_12673#3      CCAGATCGGCGGCGAACCAGTGATCTCCGGCGAGGGCAGGAGAATGTCGAGAT-----AA 91
                           *  *   ***   * *      *  *    *   * **    *   ***       

consensus_12673#1      AGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGT-TCATAGTC 557
consensus_12673#2      AGATGCAGCCCCCGAGAAGGCTGTGAGATTCTATGNGTGTTCGTTGCCTGT-TCATAGTC 161
consensus_12673#0      AGATGCAGCCACCGAGAAGGCTGTGAGATTCTATGCGTGTTCGTTGCCTGT-TCATAGTC 1318
consensus_12673#3      AGGTGGAGTAGTCGAGTATCGCGTAAAANA--AAGAGAAATCTCTCCCCGTCTCGTTGTC 149
                       ** ** **    **** *    ** * *    * * *   **  * ** ** ** * ***

consensus_12673#1      CAATTAA-GTTACCTGTTACTGCTTCCTGCTAGATATGTAACC-AATTGTAATGGAAGAG 615
consensus_12673#2      CAATTAAAGTTACCTGTTACTGCTTCCTGCTAGATATGTAACCCAATTGTAATGGAAGAG 221
consensus_12673#0      CAATTAA-GTTACCTGTTACTGCTTCCTGCTAGATATGTAACC-AATTGTAATGGAAGAG 1376
consensus_12673#3      TCCTNCG---CTCCTCGNGCCGCCGCCAAGACGAGTCGCGGGGNAGTGGCGGCGATCGNN 206
                          *        ***    * **  **     **   *      * * *    *   *  

consensus_12673#1      CAAAGA--CGTATTATATC-GTTTATTATGGAAGTTTGAACATTTAGAGCAAAAAAAAAA 672
consensus_12673#2      CAAAAGACCATNTTATNTNCGTTTNTTATGGAAGTTTNAACCTTTANAGCCCNAAAAAAA 281
consensus_12673#0      CAAAGA--CATATTATATC-GTTTATTATGGAAGTTTGAACATTTAGAGCACTTGTTTGG 1433
consensus_12673#3      CAGAGCAGTGGAGNGNAGGGGATCCTGGGAGGAGTNACCGGAGGGAATGCAAGACCCANG 266
                       ** *                * *  *    * ***          *  **          

consensus_12673#1      AAA--------------------------------------------------------- 675
consensus_12673#2      AAAAAAAANA-------------------------------------------------- 291
consensus_12673#0      AGTTCTTTTTGTGCAATATGAAAGAGTGCTATCAGTTTAACTGAAATTTAATCGTGGCAA 1493
consensus_12673#3      TGG--------------------------------------------------------- 269
                                                                                   

consensus_12673#1      --
consensus_12673#2      --
consensus_12673#0      AA 1495
consensus_12673#3      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)