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Oryza sativa
cluster # 12692 cluster # 12692       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12692#0 length = 1222 sequences # 4  
consensus_12692#1 length = 1157 sequences # 4  
consensus_12692#2 length = 906 sequences # 2  
consensus_12692#3 length = 790 sequences # 1  

consensusID : consensus_12692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1222
fasta sequence
                              [AACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTCTCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATCTCCGGCAGCCTCATCTTCTTCCGTGGTCGCTGTCCGGCGGGCCGGGGAGGCGGGGTCGGTAGGATCAGCTGGCGCCGTCCGGCAGGGCCCACCTGTAAGCGAGAGAAGAGCACGCACGCCATTAGTTATACAGTTATACTACTACTACTAGCACTCATCATCACACACCCAGCGAATACTGTACTGGAAGTAGCTAGTAACGCGCTGCTGGTAGGATCAAACAACACAACACGGGCCACTAGAGCCAACCAACTACAGTCCAACCAACGCTGCTGCTGCTGCTGCATTAAGGAGGCGACCGTAGAAAAAGAAAGCAACAGGCAACGCATGTTCCACCCAAAAGAATATTGTTTTCCAGGTGGTAGGAAGGGAATTAGATGAGAGAGTCTAGCTTAGCTTAAGCTTGGCTCTAATGGGGGAAAACATCACCTAACTAACTCCTACCAAGATCCCACAAAACTGCCCCTCATTGTTGCCCTACCCGCATGAAGCACATTTCGACATGATAGGA]

[+] EMBL CB659846             [AACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTCTCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATCTCCGGCAGCCTCATCTTCTTCCGTGGTCGCTGTCCGGCGGGCCGGGGAGGCGGGGTCGGTAGGATCAGCTGGCGCCGTCCGGCAGGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB664766             [         AACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB664726             [         AACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGGGCCCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB659847             [                                                                                                                                                                                                                                                                                                                                                                                                                         ATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTGTAGGTCAGGCAGCATGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACATTGTCTCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGATGAATCTCCGGCAGCCTCATCTTCTTCCGTGGTCGCTGTCCGGCGGGCCGGGGAGGCGGGGTCGGTAGGATCAGCTGGCGCCGTCCGGCAGGGCCCACCTGTAAGCGAGAGAAGAGCACGCACGCCATTAGTTATACAGTTATACTACTACTACTAGCACTCATCATCACACACCCAGCGAATACTGTACTGGAAGTAGCTAGTAACGCGCTGCTGGTAGGATCAAACAACACAACACGGGCCACTAGAGCCAACCAACTACAGTCCAACCAACGCTGCTGCTGCTGCTGCATTAAGGAGGCGACCGTAGAAAAAGAAAGCAACAGGCAACGCATGTTCCACCCAAAAGAATATTGTTTTCCAGGTGGTAGGAAGGGAATTAGATGAGAGAGTCTAGCTTAGCTTAAGCTTGGCTCTAATGGGGGAAAACATCACCTAACTAACTCCTACCAAGATCCCACAAAACTGCCCCTCATTGTTGCCCTACCCGCATGAAGCACATTTCGACATGATAGGA]


>consensus_12692#0 AACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAA CAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCAT CGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAA ACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATATGACACT GGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAA TTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCCAGCTT CCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAG CCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGG TCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGC CTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTC TCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCC TCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATCTCCGGCAGC CTCATCTTCTTCCGTGGTCGCTGTCCGGCGGGCCGGGGAGGCGGGGTCGGTAGGATCAGC TGGCGCCGTCCGGCAGGGCCCACCTGTAAGCGAGAGAAGAGCACGCACGCCATTAGTTAT ACAGTTATACTACTACTACTAGCACTCATCATCACACACCCAGCGAATACTGTACTGGAA GTAGCTAGTAACGCGCTGCTGGTAGGATCAAACAACACAACACGGGCCACTAGAGCCAAC CAACTACAGTCCAACCAACGCTGCTGCTGCTGCTGCATTAAGGAGGCGACCGTAGAAAAA GAAAGCAACAGGCAACGCATGTTCCACCCAAAAGAATATTGTTTTCCAGGTGGTAGGAAG GGAATTAGATGAGAGAGTCTAGCTTAGCTTAAGCTTGGCTCTAATGGGGGAAAACATCAC CTAACTAACTCCTACCAAGATCCCACAAAACTGCCCCTCATTGTTGCCCTACCCGCATGA AGCACATTTCGACATGATAGGA



consensusID : consensus_12692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1157
fasta sequence
                              [TTTTTTTTTTTTTTGGAACAANACAGTAGGACTCTACAAACAGCCAAAGATTCACACCAACATTGAACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCA-GGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAAGGGCATTAGTAAGATGGGAGGATCATATGGCACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCCAGCTTCCTCTATATACAGTTAAAATTCTTTGGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTCTGCAAAATAGAGGGGAGCCGGAGCCGGAGCCGCCGCTGTAGTCGAGGGGAGACGCCGGGCTACCCCTGGCCCACCTCCCCTTGGTCGCCGCCGACCCCGACCCCGACGGCGAGCGGCGCCGCGACGACCGCGACCGCTTCCCCCGTGCCACCGTCGGCCACGCCAGCTCCTCCTCCTCCTCCTCCACCACCACCTCCTTCCCCTTCGCGGCAGCCGTCCCCCACGGCGGCGTCCACCCGGCGAGGTCGGCCCCGCGGAGCGAGCAGATGATGTCCGCCG-CCGCGGCCACCGCGCACGCCTCAGCGTCGGCCGCGGTCATGGGAGCAGCTTCCCTTCGACGAGTCGAGTCGAGACGAACCCTAGAGAAGAAGCCGCCAAAGCGGAGGAGGCGTGGAAGCGAGAGGGAGATGTGGAGAGAGAGAGAGGAGGAAGGCGAGGGAGAGATGTGGGAATGGTGGGGGAGGAGCGAGGAGGAAATGAGGGGGGCGTGGA]

[-] EMBL AU173291             [TTTTTTTTTTTTTTGGAACAANACAGTAGGACTCTACAAACAGCCAAAGATTCACACCAACATTGAACAGAATAAACAAAANAACATTGAGATAGTTCTTCCCTAACTTACAGNGCTTANATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCA GGGTAAATAAAAACTACTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB966502             [                                                            CATTGAACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAAGGGCATTAGTAAGATGGGAGGATCATATGGCACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCCAGCTTCCTCTATATACAGTTAAAATTCTTTGGTCTGGTTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AK065143             [                                                                          AACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCA GGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTCTGCAAAATAGAGGGGAGCCGGAGCCGGAGCCGCCGCTGTAGTCGAGGGGAGACGCCGGGCTACCCCTGGCCCACCTCCCCTTGGTCGCCGCCGACCCCGACCCCGACGGCGAGCGGCGCCGCGACGACCGCGACCGCTTCCCCCGTGCCACCGTCGGCCACGCCAGCTCCTCCTCCTCCTCCTCCACCACCACCTCCTTCCCCTTCGCGGCAGCCGTCCCCCACGGCGGCGTCCACCCGGCGAGGTCGGCCCCGCGGAGCGAGCAGATGATGTCCGCCG CCGCGGCCACCGCGCACGCCTCAGCGTCGGCCGCGGTCATGGGAGCAGCTTCCCTTCGACGAGTCGAGTCGAGACGAACCCTAGAGAAGAAGCCGCCAAAGCGGAGGAGGCGTGGAAGCGAGAGGGAGATGTGGAGAGAGAGAGAGGAGGAAGGCGAGGGAGAGATGTGGGAATGGTGGGGGAGGAGCGAGGAGGAAATGAGGGGGGCGTGGA]
[-] EMBL OSC29701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCGTCCGCGGCCANCGCGCACGCCTCAGCGTCGNCCNCGNTCATTGGAGCAGCTTCCCTTCGACGAGTCGAGTCGAGACGAACCCTAGAGAAGAAGTCGCCAAATCGGAGGAGGCGTGGAAGCGAGAGGGAGATGTGGAGAGAGAGAGAGGAGGAAGGCTAGGGAGAGATGTGGGAATGGTGGGGGA                              ]


>consensus_12692#1 TTTTTTTTTTTTTTGGAACAANACAGTAGGACTCTACAAACAGCCAAAGATTCACACCAA CATTGAACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAG ATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGC CTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAA GGTAAACCGATCCTCCTTTCTGCTCCTAAAAGGGCATTAGTAAGATGGGAGGATCATATG GCACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTC CTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAGAGCCCCTTGTAGCCC AGCTTCCTCTATATACAGTTAAAATTCTTTGGTCTGGTTAGCGACGCCGCGGTAATAATC TGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGT TGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCT GCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACC TTGTCTGCAAAATAGAGGGGAGCCGGAGCCGGAGCCGCCGCTGTAGTCGAGGGGAGACGC CGGGCTACCCCTGGCCCACCTCCCCTTGGTCGCCGCCGACCCCGACCCCGACGGCGAGCG GCGCCGCGACGACCGCGACCGCTTCCCCCGTGCCACCGTCGGCCACGCCAGCTCCTCCTC CTCCTCCTCCACCACCACCTCCTTCCCCTTCGCGGCAGCCGTCCCCCACGGCGGCGTCCA CCCGGCGAGGTCGGCCCCGCGGAGCGAGCAGATGATGTCCGCCGCCGCGGCCACCGCGCA CGCCTCAGCGTCGGCCGCGGTCATGGGAGCAGCTTCCCTTCGACGAGTCGAGTCGAGACG AACCCTAGAGAAGAAGCCGCCAAAGCGGAGGAGGCGTGGAAGCGAGAGGGAGATGTGGAG AGAGAGAGAGGAGGAAGGCGAGGGAGAGATGTGGGAATGGTGGGGGAGGAGCGAGGAGGA AATGAGGGGGGCGTGGA



consensusID : consensus_12692#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 906
fasta sequence
                              [ATCACCACTAACACAATGGATCATAGTATGTACTTCCACACCCATAACACGCGTGCAAAAAGAATATATTTCCCCACAAAATAATTCTCTCACGGCAAGAGACTTAATAACCCGAAATTCTCATGCCTTGAACGCCATACGTGTCTACCTTTATCTACCGGCAAGAGAAGAGAACGCAAGTG-G-CAGTGATCCTG-CAGGCATACCGGCAACACATGCAGTGACA-CACACATTTCACTGCGCATAACAAATACGTGATCATGCGGCAAAGCTAACCTCGAGCAGTTCGTGTATGGT-AAAAAAGAAAAGCATGG-AATCGACATCTAACCNTGAGAAAGGCTTATCATCAGCACCGGTTGTCATCCGTTTTCAAAGGAC-AACGGCTGGTTGAGAGGGATGTGGAGTGAAGATCGCCACCAAACCAAACCCAGCCACACACATAGCACTCTTCTCCTAGGAAGCCAGGAAGAGCCTAGGACGACGAAGTAAAGCACACACCAAGGAAGAGAGAGAAAATATCGAAGGACAGCATGCATTCACAATGCCAGGGGACCACTAGTTCTCCATTGGGAGGCTCAGGGGAACTCTACTTTTAGCAAGTTGGAAAGTTCTATCACTTATGCTTTAAGCTATACCAACTGATCAAACATGCAGAATTTTTATTTGGGTTTTATGATGATTGCGCACTCAGCGCCCCAACCTGGAAGCGATTGCACGCCACATGTGCACAAAAGAGAAAGAGGAGAAGATTTGGTTAGATAGCAGCATATGCCACTGACCTCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATCTCCGGCAGCCTCTGCACA]

[-] EMBL AW155045             [ATCACCACTAACACAATGGATCATAGTATGTACTTCCACACCCATAACACGCGTGCAAAAAGAATATATTTCCCCACAAAATAATTCTCTCACGGCAAGAGACTTAATAACCCGAAATTCTCATGCCTTGAACGCCATACGTGTCTACCTTTATCTACCGGCAAGAGAAGAGAACGCAAGTG G CAGTGATCCTG CAGGCATACCGGCAACACATGCAGTGACA CACACATTTCACTGCGCATAACAAATACGTGATCATGCGGCAAAGCTAACCTCGAGCAGTTCGTGTATGGT AAAAAAGAAAAGCATGG AATCGACATCTAACCNTGAGAAAGGCTTATCATCAGCACCGGTTGTCATCCGTTTTCAAAGGAC AACGGCTGGTTGAGAGGGATGTGGAGTGAAGATCGCCACCAAACCAAACCCAGCCACACACATAGCACTCTTCTCCTAGGAAGCCAGGAAGAGCCTAGGACGACGAAGTAAAGCACACACCAAGGAAGAGAGAGAAAATATCGAAGGACAGCATGCATTCACAATGCCAGGGGACCACTAGTTCTCCATTGGGAGGCTCAGGGGAACTCTACTTTTAGCAAGTTGGAAAGTTCTATCACTTATGCTTTAAGCTATACCAACTGATCAAACATGCAGAATTTTTATTTGGGTTTTATGATGATTGCGCACTCAGCGCCCCAACCTGGAAGCGATTGCACGCCACATGTGCACAAAAGAGAAAGAGGAGAAGATTTGGTTAGATAGCAGCATATGCCACTGACCTCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATCTCCGGCAGCCTCTGCACA]
[-] EMBL CB678601             [                                                                                                                                                                           tactGCAAGTGTGCCAGTGATCCTGTCCGGCACTCCGGCCACACATGCAGTGACACCGCACCTTTCACCGCGCAAAACAAATACGTGCTCATGCGGCAAAGCTAACCCCGGGCAGTTCGTGTATGGTCAAAAAAAGAAAGCATGGAAATCGACATCTAAACCTGCGAAAGGCTTATCATCAGCACCGGTTGTCATCCGTTTTCAAAGGACAAACGG TGGTTGAGAGGGATGTGGAGTGAAGATCGCCACCAAACCAAACCAAGCCACACACATAGCACTCTTCTCCTAGGAAGCCAGGAAGAGCCTAGGACGACGAAGTAAAGCACACACCAAGGAAGAGAGAGAAAATATCGAAGGACAGCATGCATTCACAATGCCAGGGGACCACTAGTTCTCCATTGGGAGGCTCAGGGGAACTCTACTTTTAGCAAGTTGGAAAGTTCTATCACTTATGCTTTAAGCTATACCAACTGATCAAACATGCAGAATTTTTATTTGGGTTTTATGATGATTGCGCACTCAGCGCCCCAACCTGGAAGCGATTGCACGCCACATGTGCACAAAAGAGAAAGAGGAGAAGATTTGGTTAGATAGCAGCATATGCCACTGACCTCTAGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTGTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATATGCGGCAG          ]


>consensus_12692#2 ATCACCACTAACACAATGGATCATAGTATGTACTTCCACACCCATAACACGCGTGCAAAA AGAATATATTTCCCCACAAAATAATTCTCTCACGGCAAGAGACTTAATAACCCGAAATTC TCATGCCTTGAACGCCATACGTGTCTACCTTTATCTACCGGCAAGAGAAGAGAACGCAAG TGGCAGTGATCCTGCAGGCATACCGGCAACACATGCAGTGACACACACATTTCACTGCGC ATAACAAATACGTGATCATGCGGCAAAGCTAACCTCGAGCAGTTCGTGTATGGTAAAAAA GAAAAGCATGGAATCGACATCTAACCNTGAGAAAGGCTTATCATCAGCACCGGTTGTCAT CCGTTTTCAAAGGACAACGGCTGGTTGAGAGGGATGTGGAGTGAAGATCGCCACCAAACC AAACCCAGCCACACACATAGCACTCTTCTCCTAGGAAGCCAGGAAGAGCCTAGGACGACG AAGTAAAGCACACACCAAGGAAGAGAGAGAAAATATCGAAGGACAGCATGCATTCACAAT GCCAGGGGACCACTAGTTCTCCATTGGGAGGCTCAGGGGAACTCTACTTTTAGCAAGTTG GAAAGTTCTATCACTTATGCTTTAAGCTATACCAACTGATCAAACATGCAGAATTTTTAT TTGGGTTTTATGATGATTGCGCACTCAGCGCCCCAACCTGGAAGCGATTGCACGCCACAT GTGCACAAAAGAGAAAGAGGAGAAGATTTGGTTAGATAGCAGCATATGCCACTGACCTCT AGCTTGCAGTTTTCCTTGGACAACGCCGTGCAAGCTCTCTGCAACGCCACCATCTCCTCG CGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAGCTGCTGAATCTCCGGCAGCCTC TGCACA



consensusID : consensus_12692#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence
                              [AACAGAATAAACAAAAGAACATTGAGATAGTTCCTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAATAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAAAGCCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTCTGCAAAATAGAGGAAAAGATTGTTATTATACATTTCAGAAAAAAAAGGTTTTATGAAACATAATTTCAGATGACTGCAGAAGGCAAATCTCTTATGAATCCATGAGCCCAACAGAGTAGACTTGGAAAGGAAATTTGGGTTGTAGTCACAATCTACCTAGCGTAGTTCTTATATTTTGGTAAAAGAGACA]

[+] EMBL CB678602             [AACAGAATAAACAAAAGAACATTGAGATAGTTCCTCCCTAACTTACAGTGCTTAGATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAAACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAATAAGATTGGAGGATCATATGACACTGGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAATTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAAAGCCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGGTCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTCTGCAAAATAGAGGAAAAGATTGTTATTATACATTTCAGAAAAAAAAGGTTTTATGAAACATAATTTCAGATGACTGCAGAAGGCAAATCTCTTATGAATCCATGAGCCCAACAGAGTAGACTTGGAAAGGAAATTTGGGTTGTAGTCACAATCTACCTAGCGTAGTTCTTATATTTTGGTAAAAGAGACA]


>consensus_12692#3 AACAGAATAAACAAAAGAACATTGAGATAGTTCCTCCCTAACTTACAGTGCTTAGATGAA CAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGCCTCAT CGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAAGGTAA ACCGATCCTCCTTTCTGCTCCTAAAATGGCATTAATAAGATTGGAGGATCATATGACACT GGTGCTAAACTCTAGTAAATCTGAACAACTTATCAAACAAGCATAAGGTATGGTCCTTAA TTATCTCCTTTAGCTTCATCTTGAGTGAGCGAGCGATCAAAGCCCCTTGTAGCCCAGCTT CCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGCCGCGGTAATAATCTGGAG CCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCCTCCACTGGGAGGTTGAGG TCAGGCAGCACGAAGCCGTTTTGAGATTCCTGCTTGGCTGCGGGCTCATCAGGCTGCGGC CTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTTTGCTTGATTTCTCTAACCTTGTC TGCAAAATAGAGGAAAAGATTGTTATTATACATTTCAGAAAAAAAAGGTTTTATGAAACA TAATTTCAGATGACTGCAGAAGGCAAATCTCTTATGAATCCATGAGCCCAACAGAGTAGA CTTGGAAAGGAAATTTGGGTTGTAGTCACAATCTACCTAGCGTAGTTCTTATATTTTGGT AAAAGAGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12692#1      TTTTTTTTTTTTTTGGAACAANACAGTAGGACTCTACAAACAGCCAAAGATTCACACCAA 60
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      ------------------------------------------------------------
consensus_12692#2      ------------------------------------------------------------
                                                                                   

consensus_12692#1      CATTGAACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAG 120
consensus_12692#3      -----AACAGAATAAACAAAAGAACATTGAGATAGTTCCTCCCTAACTTACAGTGCTTAG 55
consensus_12692#0      -----AACAGAATAAACAAAAGAACATTGAGATAGTTCTTCCCTAACTTACAGTGCTTAG 55
consensus_12692#2      -----ATCACCACTAACACAATGG-ATCATAGTATGTACTTCCACACCCATAACACGCG- 53
                            * **  *  **** **    **     **  *  * **  **  * *   *    

consensus_12692#1      ATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGC 180
consensus_12692#3      ATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGC 115
consensus_12692#0      ATGAACAACCAAGCTACACTGTCCGGAGCTTGTACTACTAAAGTAAAATCTTCCCTCTGC 115
consensus_12692#2      -TGCAAAAAGAATATATTTCCCCACAAAATAATTCTCTCACGGCAAGAGACTTAATA-AC 111
                        ** * **  **  **      *   *  *  * **   *  * ** *   *   *   *

consensus_12692#1      CTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAA 240
consensus_12692#3      CTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAA 175
consensus_12692#0      CTCATCGACACACAAGGCCAGGGTAAATAAAAACTACTATAACTCTATCAGACAAAGCAA 175
consensus_12692#2      CCGAAATTCTCATGCCTTGAACGCCATACGTGTCTACCTTTA-TCTACCGGCAAGAGAAG 170
                       *  *    * **       *  *  *       ****  * * **** * *  * ** * 

consensus_12692#1      GGTAAACCGATCCTCCT--TTCTGCTCCTAAAAGGGCATTAGTAAGATGGGAGGATCATA 298
consensus_12692#3      GGTAAACCGATCCTCCT--TTCTGCTCCTAAAATGGCATTAATAAGATTGGAGGATCATA 233
consensus_12692#0      GGTAAACCGATCCTCCT--TTCTGCTCCTAAAATGGCATTAGTAAGATTGGAGGATCATA 233
consensus_12692#2      AGAACGCAAGTGGCAGTGATCCTGCAGGCATACCGGCAACACATGCAGTGACACA-CACA 229
                        * *  *   *     *  * ****    * *  ****  *     *  *    * ** *

consensus_12692#1      TGGCACTG---GTGCTAAACTC-TAGTAAATCTGAACAACTTA--TCAAACAA---GCAT 349
consensus_12692#3      TGACACTG---GTGCTAAACTC-TAGTAAATCTGAACAACTTA--TCAAACAA---GCAT 284
consensus_12692#0      TGACACTG---GTGCTAAACTC-TAGTAAATCTGAACAACTTA--TCAAACAA---GCAT 284
consensus_12692#2      TTTCACTGCGCATAACAAATACGTGATCATGCGGCAAAGCTAACCTCGAGCAGTTCGTGT 289
                       *  *****    *   ***  * *  * *  * * * * ** *  ** * **    *  *

consensus_12692#1      AAGGTATGGTCCTTAATTATCTCCTTTA-GCTTCATCTTGAGTGAG-CGAGCGATCAGAG 407
consensus_12692#3      AAGGTATGGTCCTTAATTATCTCCTTTA-GCTTCATCTTGAGTGAG-CGAGCGATCAAAG 342
consensus_12692#0      AAGGTATGGTCCTTAATTATCTCCTTTA-GCTTCATCTTGAGTGAG-CGAGCGATCAGAG 342
consensus_12692#2      ATGGTAAAAAAGAAAAGCATGGAATCGACATCTAACCNTGAGAAAGGCTTATCATCAGCA 349
                       * ****        **  **    *  *    * * * ****  ** *     ****   

consensus_12692#1      CCCCTTGTAGCCCAGCTTCCTCTATATACAGTTAAAATTCTTTGGTCTGGTTAGCGACGC 467
consensus_12692#3      CCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGC 402
consensus_12692#0      CCCCTTGTAGCCCAGCTTCCTCTATATACAATTAAAATTCTTTTGTCTGGTTAGCGACGC 402
consensus_12692#2      CCGGTTGTCATCCGTTTTCAAAGGACAACGGCTG--GTTGAGAGGGATGTGGAGTGAAGA 407
                       **  ****   **   ***        **   *    **     *  **   ** ** * 

consensus_12692#1      CGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCC 527
consensus_12692#3      CGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCC 462
consensus_12692#0      CGCGGTAATAATCTGGAGCCGTTCATGCATCAAGGAGCTGATCCATCAGCAGCCATGTCC 462
consensus_12692#2      T-CGCCACCAAACCAAACCCAGCCACACACATAGCACTCTTCTCCTAGGAAGCCAGGAAG 466
                         **  *  ** *   * **   **  **   ** *       * *  * ***** *   

consensus_12692#1      TCCACTGGGAGGTTGAGGTCAGGCA-GCACGAAGCCGTTTTGAGAT--TCCTGCTTGGCT 584
consensus_12692#3      TCCACTGGGAGGTTGAGGTCAGGCA-GCACGAAGCCGTTTTGAGAT--TCCTGCTTGGCT 519
consensus_12692#0      TCCACTGGGAGGTTGAGGTCAGGCA-GCACGAAGCCGTTTTGAGAT--TCCTGCTTGGCT 519
consensus_12692#2      AGC-CTAGGACGACGAAGTAAAGCACACACCAAGGAAGAGAGAGAAAATATCGAAGGACA 525
                         * ** *** *  ** ** * ***  *** ***       ****   *   *   * * 

consensus_12692#1      GCGGGC--TCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTT 642
consensus_12692#3      GCGGGC--TCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTT 577
consensus_12692#0      GCGGGC--TCATCAGGCTGCGGCCTTGCTTGCTGCCCCTCGGATTTCGTTCCGTTTCGTT 577
consensus_12692#2      GCATGCATTCACAATGCCAGGGGACCACTAGTTCTCCATTGGGAGGCTCAGGGGAACTCT 585
                       **  **  ***  * **   **     ** * *  ** * **    *     *   *  *

consensus_12692#1      TGCTTGATTTCTCTAACCTTGTCTGCAAAATAGAGGGGAGCCGGAGCCGGAGCCGCCGCT 702
consensus_12692#3      TGCTTGATTTCTCTAACCTTGTCTGCAAAATAGAGGAAAAGATTGTTATTATACATTTCA 637
consensus_12692#0      TGCTTGATTTCTCTAACCTTGTCTCTAGCTTGCAG-------TTTTCCTTGGACAACGCC 630
consensus_12692#2      ACTTTTAGCAAGTTGGAAAGTTCTATCACTTATGCTTTAAGCTATACCAACTGATCAAAC 645
                          ** *      *       ***      *                             

consensus_12692#1      GTAGTCGAGGGGAGACGCCGGGCTACCCCTGGCCCACCTCCCCTTGGTCGCCGCCGACCC 762
consensus_12692#3      GAAAAAAAAGGTTTTATGAAACATAATTTCAGATGACTGCAGAAGGCAAATCTCTTATG- 696
consensus_12692#0      GTGCAAGCTCTCTGCAACGCCACCATCTCCTCGCGAAGGCC-ATCGTTCTCCACCGTCAG 689
consensus_12692#2      ATGCAGAATTTTTATTTGGGTTTTATGATGAT-TGCGCACTCAGCGCCCCAACCTGGAAG 704
                                               *              *     *       *      

consensus_12692#1      CGACCCCGACGGCGA-----GCGGCGCCGCGACGACCGCGACCGCTTCCCCCGTGCCAC- 816
consensus_12692#3      -AATCCATGAGCCCA-----ACAGAGTAGACTTGGAAAGGAAATTTGGGTTGTAGTCAC- 749
consensus_12692#0      CGACCGCACCAGCTG-----CTGAATCTCCGGCAGCCTCATCTTCTT--CCGTGGTCGC- 741
consensus_12692#2      CGATTGCACGCCACATGTGCACAAAAGAGAAAGAGGAGAAGATTTGGTTAGATAGCAGCA 764
                         *                                                   *   * 

consensus_12692#1      CGTCGGCCACGCCAGCTCCTCCTCCTCCTCCTCCACCACCACCTCCTTCCCCTTCGCGGC 876
consensus_12692#3      AATCTACCTAGCGTAGTTCTTATATTTTGGTAAAAGAGACA------------------- 790
consensus_12692#0      TGTCCGGCGGGCCGGGGAGGCGGGGTCGGTAGGATCAGCTGGCGCCGTCCGGCAGGGCCC 801
consensus_12692#2      TATGCCACTGACCTCTAGCTTGCAGTTTTCC---TTGGACAACGCCGT---GCAAGCTCT 818
                         *    *   *             *                                  

consensus_12692#1      AGCCGTCCCCCACGGCGGCGTCCACCCGGCGAGGTCGGCCCCGCGGAGCGAGCA--GATG 934
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      ACCTGTAAGCGAGAGAAGAGCACGCACGCCATTAGTTATACAGTTATACTACTACTACTA 861
consensus_12692#2      CTGCAACGCCACCATCTCCTCGCGAAGGCCATCGTTCTCCACCGTCAGCGACCGCACCAG 878
                                                                                   

consensus_12692#1      ATGTCCGCCGCCGCGGCCACCGCGCACGCCTCAGCGTCGGCCGCGGTCATGGGAGCAGCT 994
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      GCACTCATCATCACACACCCAGCGAATACT---GTACTGGAAGTAGCTAGTAACGCGCTG 918
consensus_12692#2      CTGCTGAATCTCCGGCAGCCTCTGCACA-------------------------------- 906
                                                                                   

consensus_12692#1      TCCCTTCGACGAGTCGAGTCGAGACGAACCCTAGAGAAGAAGCCGCCAAAGCGGAGGAGG 1054
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      CTGGTAGGATCAAACAACACAACACGGGCCACTAGAGCCAACCAACTACAGTCCAACCAA 978
consensus_12692#2      ------------------------------------------------------------
                                                                                   

consensus_12692#1      CGTGGAAGCGAGAGGGAGATGTGGAGAGAGAGAGAGGAGGAAGGCG--AGGGAGAGATGT 1112
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      CGCTGCTGCTGCTGCTGCATTAAGGAGGCGACCGTAGAAAAAGAAAGCAACAGGCAACGC 1038
consensus_12692#2      ------------------------------------------------------------
                                                                                   

consensus_12692#1      GGGAATGGTGGGGGAGGAGCGAGGAGGAAATGAGGGGGGCGTGGA--------------- 1157
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      ATGTTCCACCCAAAAGAATATTGTTTTCCAGGTGGTAGGAAGGGAATTAGATGAGAGAGT 1098
consensus_12692#2      ------------------------------------------------------------
                                                                                   

consensus_12692#1      ------------------------------------------------------------
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      CTAGCTTAGCTTAAGCTTGGCTCTAATGGGGGAAAACATCACCTAACTAACTCCTACCAA 1158
consensus_12692#2      ------------------------------------------------------------
                                                                                   

consensus_12692#1      ------------------------------------------------------------
consensus_12692#3      ------------------------------------------------------------
consensus_12692#0      GATCCCACAAAACTGCCCCTCATTGTTGCCCTACCCGCATGAAGCACATTTCGACATGAT 1218
consensus_12692#2      ------------------------------------------------------------
                                                                                   

consensus_12692#1      ----
consensus_12692#3      ----
consensus_12692#0      AGGA 1222
consensus_12692#2      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)