Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12701 cluster # 12701       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12701#0 length = 950 sequences # 2  
consensus_12701#1 length = 876 sequences # 7  
consensus_12701#2 length = 644 sequences # 1  
consensus_12701#3 length = 566 sequences # 1  

consensusID : consensus_12701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 950
fasta sequence
                              [CGCCGGTGCTACCGGCGGGATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACGACGAGCGGCGGGAGCGAGCGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGGGCCAGGCTGAGAAGGAGTTCAAGGTGGAGGTTGAAGCGATCGGGCGTGTTCGGCATAAGAATCTCGTTAGATTGCTCGGCTACTGTGTAGAGGGCGCTTATAGGATGCTCGTGTATGAATATGTAGACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCCCAGAGAAGTTATGTAACTACCCGTGTCATGGGAACCTTTGGAACCTGGTTCCCTGATACTCCCCACGGGGATTGTCATTACAGACCCCTGTTTTTTTATGTCCTCCCCACCACGCCTGTTTTTTCAGGTACATACTTGTGCTCTGCTCTTAGCCATCGCCAATTTTCTCTTTCCTCTCATGTTCCACTAAGTACGCAATTTCTCAGTAGTCCCTTACGTCTCGTTTACGCTGGCGCTCTTTAGATATACTATCGTGCACGTTCGTAGATATTTCATATTAACCCTCATAGCNCTCAG]

[+] EMBL CB673841             [CGCCGGTGCTACCGGCGGGATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACGACGAGCGGCGGGAGCGAGCGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGGGCCAGGCTGAGAAGGAGTTCAAGGTGGAGGTTGAAGCGATCGGGCGTGTTCGGCATAAGAATCTCGTTAGATTGCTCGGCTACTGTGTAGAGGGCGCTTATAGGATGCTCGTGTATGAATATGTAGACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGT                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA756940             [                                                                                               AGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGGGCCAGGCTGAGAAGGAGTTCAAGGTGGAGGTTGAAGCGATCGGGCGTGTTCGGCATAAGAATCTCGTTAGATTGCTCGGCTACTGTGTAGAGGGCGCTTATAGGATGCTCGTGTATGAGTATGTAGACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGGCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATCAAATCTANCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCCCAGAGAAGTTATGTAACTACCCGTGTCATGGGAACCTTTGGAACCTGGTTCCCTGATACTCCCCACGGGGATTGTCATTACAGACCCCTGTTTTTTTATGTCCTCCCCACCACGCCTGTTTTTTCAGGTACATACTTGTGCTCTGCTCTTAGCCATCGCCAATTTTCTCTTTCCTCTCATGTTCCACTAAGTACGCAATTTCTCAGTAGTCCCTTACGTCTCGTTTACGCTGGCGCTCTTTAGATATACTATCGTGCACGTTCGTAGATATTTCATATTAACCCTCATAGCNCTCAG]


>consensus_12701#0 CGCCGGTGCTACCGGCGGGATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACGA CGAGCGGCGGGAGCGAGCGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTG GGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGG CAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACA AGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGGGCC AGGCTGAGAAGGAGTTCAAGGTGGAGGTTGAAGCGATCGGGCGTGTTCGGCATAAGAATC TCGTTAGATTGCTCGGCTACTGTGTAGAGGGCGCTTATAGGATGCTCGTGTATGAATATG TAGACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAA CTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGGCTGGCCTATCTTCATG AGGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACC AGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCCCAGAGAA GTTATGTAACTACCCGTGTCATGGGAACCTTTGGAACCTGGTTCCCTGATACTCCCCACG GGGATTGTCATTACAGACCCCTGTTTTTTTATGTCCTCCCCACCACGCCTGTTTTTTCAG GTACATACTTGTGCTCTGCTCTTAGCCATCGCCAATTTTCTCTTTCCTCTCATGTTCCAC TAAGTACGCAATTTCTCAGTAGTCCCTTACGTCTCGTTTACGCTGGCGCTCTTTAGATAT ACTATCGTGCACGTTCGTAGATATTTCATATTAACCCTCATAGCNCTCAG



consensusID : consensus_12701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 876
fasta sequence
                              [GGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAGTTATGTTACTACCCGTGTTATGGGAACCTTTGGTTACGTGGCACCTGAATACGCCAGCACGGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTATAACGGGTAGATCACCAGTAGATTACACCAGGGCACCTGGAGAGGTGAACTTGGTTGAATGGCTGAAGACCATGGTTGCTGAGAGGAAAGCAGAGGAGGTAGTAGACCCC-AAGCTGCCCGAGAAGCCTTC-TCCCAAAGCACTGAAACGGGCACTTCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATGATAAGAAA-CCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGA-TTGCCAATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACAC-TTATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGCTTACAGTGTTAATGTGATTCTACCTAATCCAAAAAAAATTGTCTGCTC]

[+] EMBL CB000831             [GGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAGTTATGTTACTACCCGTGTTATGGGAACCTTTGGTTACGTGGCACCTGAATACGCCAGCACGGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTATAACGGGTAGATCACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB000871             [GGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAGTTATGTTACTACCCGTGTTATGGGAACCTTTGGTTACGTGGCACCTGAATACGCCAGCACGGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTATAACGGGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB673842             [                                 CAAATCTAGCAATATCCTTCTTGACCAGCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAGTTATGTTACTACCCGTGTTATGGGAACCTTTGGTTACGTGGCACCTGAATACGCCAGCACGGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTATAACGGGTAGATCACCAGTAGATTACACCAGGGCACCTGGAGAGGTGAACTTGGTTGAATGGCTGAAGACCATGGTTGCTGAGAGGAAAGCAGAGGAGGTAGTAGACCCC AAGCTGCCCGAGAAGCCTTC TCCCAAAGCACTGAAACGGGCACTTCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATGATAAGAAA CCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGA TTGCCAATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACAC TTATAAACTACACAAGTGTAGGGTGGTGTTGTGACTGAGACTGACTAT                                                              ]
[+] EMBL BQ906812             [                                                                                                                                                                                                                                                                                                       GAATGGCTGAAGACCATGGTT CTGAGAGGAAAGCAGAGGAGGTAGTAGACCCCTCAGCTGCCCGAGAAGCCTTCGTCCCCAAGCACTGAAACGGGCACTTCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATGATAAGAAATCCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGAGTTGCCAATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACAC TTAT AACTACACAAGTGTAGGGTGGTGTTGCGACTGAaaaaaaaaa                                                               ]
[+] EMBL BI813618             [                                                                                                                                                                                                                                                                                                                               GAGAGGAAA CAGAGGAGTTAGTAGACCCC AAGCTG CCGAGAAGCCTTC TCCC AAGCACTGAAAC GGCACTTCTGGTCGCCCTTCGCTGCGTCGATCCTGAT GCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTAT CCGCGATGATAAGAAA CCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGA TTGCCAATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACAC TTATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGCTTACAGTGTTAATGTGATTCTACCTAATCCAAAAAAAA          ]
[-] EMBL CB636799             [                                                                                                                                                                                                                                                                                                                                                      AGACCCC AAGCTGCCCGAGAAGCCTTC TCCCAAAGCACTGAAACGGGCACTTCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATGATAAGAAA CCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGA TTGCCAATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGATATCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACAC TTATAAACTACACAAGTGTAGGGTGGTGTTGTGACTGAGACTGACTATGCCCCAGCTAATGCTTACAGTGTTAATGTGATTCTACCTAATGCAAGTACAGTTGTCTGCTC]
[+] EMBL BM421005             [                                                                                                                                                                                                                                                                                                                                                                                                            CTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATGATAAGAAA CCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCCCAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGA TTGCCAATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACACTTTATAAACTACACAAGTGTA GGT GTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGCTTACAGTGTTAATGTGATTCTACCTAA   AAAAAAAA          ]


>consensus_12701#1 GGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCA GCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAG TTATGTTACTACCCGTGTTATGGGAACCTTTGGTTACGTGGCACCTGAATACGCCAGCAC GGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTAT AACGGGTAGATCACCAGTAGATTACACCAGGGCACCTGGAGAGGTGAACTTGGTTGAATG GCTGAAGACCATGGTTGCTGAGAGGAAAGCAGAGGAGGTAGTAGACCCCAAGCTGCCCGA GAAGCCTTCTCCCAAAGCACTGAAACGGGCACTTCTGGTCGCCCTTCGCTGCGTCGATCC TGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCT ACTATGCCGCGATGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGACAGACACAG CTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGACAACAGCC CAGCACTACAGTTGAACATGAGTTTGTATGGATTGCCATTAGGGATTGCCAATATTAACC ATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCTCTCCTTGCT CTTTTGACTGTATTATACTCGAGCATCATTCTATGACACTTGACACTTATAAACTACACA AGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGCTTACAGTGTTAA TGTGATTCTACCTAATCCAAAAAAAATTGTCTGCTC



consensusID : consensus_12701#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence
                              [ACTTTTCTTGTGTTCGCCCCTTNCCGTCTGTCGTTCCTGAGTCCNCGAGTGGTCCANNCTCATATGATGGTGNCTCTATATAAATATGGGGGACACAAATGGTAAATTTCCACCATTGCCGTTCTGATATATTTGGGATTCGATTGCTTATCNTATTGCCNCGTCGGATTNGATTAATGTAAACTCCCGGTATACGATGATGCGGCCTCATGAACACCTCAGGGACAAGATCTACANGGCATGCAATGGTGTATTGGTCGTGGAAACCTTCATGGCACAAGCGGTGACGGATACGCACACCGGGTACTAGATGACAACAATGCCCATGCGAACTATCAAGTTGNACCATGAGTTTGTATCGGATTGGCCATGTGAGGGATTGTTGCCAATGATGTGAACCATGGTGTGGTGACATGTGACATGAATGTTGTGTGTGCCCCTGCTGCGTTGGGATGCTGCATGAAACCAGCTGCTGCCCTTGGCTGCTGTGTTGGACTGGTGATGTATGACTGCAGAGCATGCATTGGCTGATGGACACTTGGACACTTATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGCTTACCNTGCTTAATGTGATTCTACCTAATGCAAAAA]

[+] EMBL BQ907193             [ACTTTTCTTGTGTTCGCCCCTTNCCGTCTGTCGTTCCTGAGTCCNCGAGTGGTCCANNCTCATATGATGGTGNCTCTATATAAATATGGGGGACACAAATGGTAAATTTCCACCATTGCCGTTCTGATATATTTGGGATTCGATTGCTTATCNTATTGCCNCGTCGGATTNGATTAATGTAAACTCCCGGTATACGATGATGCGGCCTCATGAACACCTCAGGGACAAGATCTACANGGCATGCAATGGTGTATTGGTCGTGGAAACCTTCATGGCACAAGCGGTGACGGATACGCACACCGGGTACTAGATGACAACAATGCCCATGCGAACTATCAAGTTGNACCATGAGTTTGTATCGGATTGGCCATGTGAGGGATTGTTGCCAATGATGTGAACCATGGTGTGGTGACATGTGACATGAATGTTGTGTGTGCCCCTGCTGCGTTGGGATGCTGCATGAAACCAGCTGCTGCCCTTGGCTGCTGTGTTGGACTGGTGATGTATGACTGCAGAGCATGCATTGGCTGATGGACACTTGGACACTTATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGCTTACCNTGCTTAATGTGATTCTACCTAATGCAAAAA]


>consensus_12701#2 ACTTTTCTTGTGTTCGCCCCTTNCCGTCTGTCGTTCCTGAGTCCNCGAGTGGTCCANNCT CATATGATGGTGNCTCTATATAAATATGGGGGACACAAATGGTAAATTTCCACCATTGCC GTTCTGATATATTTGGGATTCGATTGCTTATCNTATTGCCNCGTCGGATTNGATTAATGT AAACTCCCGGTATACGATGATGCGGCCTCATGAACACCTCAGGGACAAGATCTACANGGC ATGCAATGGTGTATTGGTCGTGGAAACCTTCATGGCACAAGCGGTGACGGATACGCACAC CGGGTACTAGATGACAACAATGCCCATGCGAACTATCAAGTTGNACCATGAGTTTGTATC GGATTGGCCATGTGAGGGATTGTTGCCAATGATGTGAACCATGGTGTGGTGACATGTGAC ATGAATGTTGTGTGTGCCCCTGCTGCGTTGGGATGCTGCATGAAACCAGCTGCTGCCCTT GGCTGCTGTGTTGGACTGGTGATGTATGACTGCAGAGCATGCATTGGCTGATGGACACTT GGACACTTATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCA GCTAATGCTTACCNTGCTTAATGTGATTCTACCTAATGCAAAAA



consensusID : consensus_12701#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence
                              [CGCCGCAGCGGACGCAGCCGCCGGTGCTACCGGCGGGATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACGACGAGCGGCGGGAGCGAGCGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGTACTAATCCTGTGCCTTCTCTTGGAGCTTTTCGATTTGATTTGGACATCTCCAGCCTTTCCATCCTTGTATAGCCTAGAATTCGTCCTTGGGTGAGTAGAAAGGATGGAGAATATAGTTAGGAATACCCGTTTTTATTTTTTATTTTTTAAAGAAATCAATTTTCCCTTTCTGTTTAAACTGGGGTGTGTGATTTCGTTTGTTCGTAAAAATGCCACTGATTTCGTCTGTTTAACCGTGTTTGTGTTCTTGT]

[+] EMBL CB636798             [CGCCGCAGCGGACGCAGCCGCCGGTGCTACCGGCGGGATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACGACGAGCGGCGGGAGCGAGCGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGTACTAATCCTGTGCCTTCTCTTGGAGCTTTTCGATTTGATTTGGACATCTCCAGCCTTTCCATCCTTGTATAGCCTAGAATTCGTCCTTGGGTGAGTAGAAAGGATGGAGAATATAGTTAGGAATACCCGTTTTTATTTTTTATTTTTTAAAGAAATCAATTTTCCCTTTCTGTTTAAACTGGGGTGTGTGATTTCGTTTGTTCGTAAAAATGCCACTGATTTCGTCTGTTTAACCGTGTTTGTGTTCTTGT]


>consensus_12701#3 CGCCGCAGCGGACGCAGCCGCCGGTGCTACCGGCGGGATCCACGCGGTCGACGGCGGCCA GCGGCATGTCGGCCACGACGAGCGGCGGGAGCGAGCGGGACGGCGCCACGCCGAGGAGCA CGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCACCTCGGGTGGGGCCATTGGTTCACTC TCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCGGAGGAGAATGTGATCGGGGAAGGCG GCTACGGGATTGTTTACAAGGGCACGCTGCAGAATTCCGCCATGGTCGCCGTCAAGAATC TACTCAATAATAGGTACTAATCCTGTGCCTTCTCTTGGAGCTTTTCGATTTGATTTGGAC ATCTCCAGCCTTTCCATCCTTGTATAGCCTAGAATTCGTCCTTGGGTGAGTAGAAAGGAT GGAGAATATAGTTAGGAATACCCGTTTTTATTTTTTATTTTTTAAAGAAATCAATTTTCC CTTTCTGTTTAAACTGGGGTGTGTGATTTCGTTTGTTCGTAAAAATGCCACTGATTTCGT CTGTTTAACCGTGTTTGTGTTCTTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12701#0      ------------------------------------------------------------
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      GGGGCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCA 60
consensus_12701#2      ------------------------------------------------------------
                                                                                   

consensus_12701#0      ------------------------------------------------------------
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      GCAATGGAATGCTAAAGTGTCAGATTTTGGTCTTGCGAAGCTATTGTGCTCAGAGAGAAG 120
consensus_12701#2      ------------------------------------------------------------
                                                                                   

consensus_12701#0      ------------------------------------------CGCCGGTGCTACCGGCGG 18
consensus_12701#3      ------------------------CGCCGCAGCGGACGCAGCCGCCGGTGCTACCGGCGG 36
consensus_12701#1      TTATGTTACTACCCGTGTTATGGGAACCTTTGGTTACGTGGCACCTGAATACGCCAGCAC 180
consensus_12701#2      -------ACTTTTCTTGT-GTTCGCCCCTTNCCGTCTGTCGTTCCTGAGTCCNCGAGTGG 52
                                                                   * *      *  *   

consensus_12701#0      GATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACG-ACGAGCGGCGGGAGCGAG 77
consensus_12701#3      GATCCACGCGGTCGACGGCGGCCAGCGGCATGTCGGCCACG-ACGAGCGGCGGGAGCGAG 95
consensus_12701#1      GGGGATGTTAAATGAGAGGAGCGATGTTTATAGCTTTGGAGTACTTATAATGGAGATTAT 240
consensus_12701#2      TCCANNCTCATATGATGGTGNC--TCTATATAAATATGGGGGACACAAATGGTAAATTTC 110
                                    **  *   *       **         * **       *        

consensus_12701#0      CGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCAC 137
consensus_12701#3      CGGGACGGCGCCACGCCGAGGAGCACGGCGAGCGGCTCGGCTGGGCCGGAGGTGTCGCAC 155
consensus_12701#1      AACGGGTAGATCAC-CAGTAGATTACACCAGGGCACCTGGAGAGGTGAACTTGGTTGAAT 299
consensus_12701#2      CACC-----ATTGC-CGTTCTGATATATTTGGG---------------ATTCGATTGCTT 149
                                    * *        *      *                      * *   

consensus_12701#0      CTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCG 197
consensus_12701#3      CTCGGGTGGGGCCATTGGTTCACTCTCCGGGAGCTCGAGGAGGCAACCGACGGGCTCGCG 215
consensus_12701#1      GGCTGAAGACCATGGTTGCTGAGAGGAAAGCAGAG-GAGGTAGTAGACCCCAAGCTGCCC 358
consensus_12701#2      ATCNTATTGCCNCGTCGGATTNGATTAATG-------------TAAACTCCCGGTATACG 196
                         *              * *         *              *  *  *  *    * 

consensus_12701#0      GAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAAT 257
consensus_12701#3      GAGGAGAATGTGATCGGGGAAGGCGGCTACGGGATTGTTTACAAGGGCACGCTGCAGAAT 275
consensus_12701#1      GAGAAGCCTTCTCCCAAAGCACT--GAAACGGGCA---CTTCT-GGTCGCCCTTCGCTGC 412
consensus_12701#2      ATGATGCGGCCTCATGAACACCTCAGGGACAAGAT---CTACA-NGGCATGCAATGGTGT 252
                         *  *                   *  **  *      * *   * *   *        

consensus_12701#0      -TCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGGGCCAGGCTGAGAAGGAGTT 316
consensus_12701#3      -TCCGCCATGGTCGCCGTCAAGAATCTACTCAATAATAGGTACTAATCCT-GTGCCTTCT 333
consensus_12701#1      GTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATG 472
consensus_12701#2      ATTGGTCGTGGAAACCTTCAT-GGCACAAGCGGTGACGGATA-CGCACAC-CGGGTACTA 309
                        *    * **    **   *       *       *           *            

consensus_12701#0      CAAGGTGGAGGTTGAAGCGATC-GGGCGTGTTCGGCATAAGAATCTCGTTA-GATTG-CT 373
consensus_12701#3      CTTGGAGCTTTTCGATTTGATTTGGACATCTCCAGCCTTTCCATCCTTGTA-TAGC--CT 390
consensus_12701#1      GATGATCTACTATGCCGCGATGATAAGAAACCCGGAAGAGATGCGCCTCAGACATCGGAC 532
consensus_12701#2      GATGA-CAACAATGCC--CATG-CGAACTATCAAGTTGNACCATGAGTTTG-TATCGGAT 364
                          *         *     **             *                  *      

consensus_12701#0      CGGCTACTGTGTAGAGG-----GCGCTTATAGGATGCTCGTGTATGAATATG-TAGACAA 427
consensus_12701#3      AGAATTCGTCCTTGGGT-----GAGTAGAAAGGATG---GAGAAT--ATAGT-TAGG-AA 438
consensus_12701#1      AGACACAGCTCAAGGGATGGCGGGAACTTCAGCAAGCGTGAGAACCAACGGTACAGATGA 592
consensus_12701#2      TGGC------CATGTGA----GGGATTGTTGCCAATGATGTGAACCA-TGGTGT-GGTGA 412
                        *           * *      *          *     * * *           *   *

consensus_12701#0      CGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACT-AACTTGGG 486
consensus_12701#3      TACCCGTTTTTATTTTTTATTTTTTAAAGAAATCAATTTTCCCTTTCTGTTTAAACTGGG 498
consensus_12701#1      CAACAGCCCAGCACTACAGTTGAACATGAGT-TTGTATGGATTGCCATTAGGGATTGCCA 651
consensus_12701#2      CA-----------------TGTGACATGAATGTTGTGTG---TGCCCCTG--------CT 444
                                                       *                           

consensus_12701#0      AAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGGC--TGGCCTATCTTCATGAGGG 544
consensus_12701#3      GTGT-GTGATTTCGTTTGTTCGTAAAAATGCCACTGATT--TCGTCTGTTTAACCGTGTT 555
consensus_12701#1      ATATTAACCATGTTGTCATTACATAATTTTTTCCCCTCTCGTTGGATCTCATAACCAGCT 711
consensus_12701#2      GCGTTGGG-ATGCTG-CATGAAACCAGCTGCTGCCCT-----TGGCTGCTGTGTTGGACT 497
                          *              *      *  *              *  *             

consensus_12701#0      GCTGGAACCGAAGGTTGTCCATCGTGACATCAAATCTAGCAATATCCTTCTTGACCAGCA 604
consensus_12701#3      TGTGTTCTTGT------------------------------------------------- 566
consensus_12701#1      CTCCTTGCTCTTTTGACTGTATTATACTCGAGCATCATTCTATG--ACACTTG-ACACTT 768
consensus_12701#2      GGTGATG----TATGACTGCAGAGCAT----GCATTGGCTGATGG-ACACTTGGACACTT 548
                                                                                   

consensus_12701#0      ATGGAATGCTAAAGTGTCAGATTTTGGTCTTGC-GAAGCTATTGTGCTCCCAGAGAAGTT 663
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      ATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGC 828
consensus_12701#2      ATAAACTACACAAGTGTAGGGTGGTGTTGCGACTGAGACTGACTATGCCCCAGCTAATGC 608
                                                                                   

consensus_12701#0      ATGTAACTACCCGTGTCATGGGAACCTTTGGAACCTGGTTCCCTGATACTCCCCACGGGG 723
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      TTACAGTG-TTAATGTGATTCTACCTAATCCAAAAAAAATTGTCTGCTC----------- 876
consensus_12701#2      TTACCNTGCTTAATGTGATTCTACCTAATGCAAAAA------------------------ 644
                                                                                   

consensus_12701#0      ATTGTCATTACAGACCCCTGTTTTTTTATGTCCTCCCCACCACGCCTGTTTTTTCAGGTA 783
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      ------------------------------------------------------------
consensus_12701#2      ------------------------------------------------------------
                                                                                   

consensus_12701#0      CATACTTGTGCTCTGCTCTTAGCCATCGCCAATTTTCTCTTTCCTCTCATGTTCCACTAA 843
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      ------------------------------------------------------------
consensus_12701#2      ------------------------------------------------------------
                                                                                   

consensus_12701#0      GTACGCAATTTCTCAGTAGTCCCTTACGTCTCGTTTACGCTGGCGCTCTTTAGATATACT 903
consensus_12701#3      ------------------------------------------------------------
consensus_12701#1      ------------------------------------------------------------
consensus_12701#2      ------------------------------------------------------------
                                                                                   

consensus_12701#0      ATCGTGCACGTTCGTAGATATTTCATATTAACCCTCATAGCNCTCAG 950
consensus_12701#3      -----------------------------------------------
consensus_12701#1      -----------------------------------------------
consensus_12701#2      -----------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)