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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2146 fasta sequence
[CTAGACTTTCGTCGATATCCCCGATAAAATCCACCCGTCTCCCCTCCTCCCCACTCGCCTTCGCCTCCATCCTCCTCCTCCTCCTGCCGGCTTGCATCCGCTCTTCCTTCCTCCAGGAGGAAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCACCACTACGGGAGTGCAAGGTGCCAAGGATGCTGGTCTGGAGAAGGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGATGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGATATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTTCACTATCTTCGGATATGCACGCAGCAAGATGACAGATGCTGAATTGAGAAACATGGTCAGCAAAACACTGACATGCAGAATAGATAAAAGGGAAAACTGTAATGAGAAGATGGAAGAGTTTTTAAAGAGATGCTTCTATCATTCAGGCCAATATGATTCAGAGGAGCATTTCATGGACCTTGACAAGAAGCTGAAACAACATGAGGGTTCCAGAGTTTCTAACCGTCTTTTCTACTTGTCAATACCACCAAATATATTCCTTGATGTTGTAAAATGTGCAAGCAAATCAGCATCATCTGGGAATGGTTGGACAAGGGTAATTGTTGAGAAACCTTTTGGTCGTGACTCAGATTCATCTTCTGCATTAACAAGGGGTCTGAAGCAGTACCTGGTAGAGGACCAAATCTTCAGGATTGACCACTACTTGGGAAAGGAACTAGTGGAGAACCTGTCTGTCCTTCGCTTCTCAAATCTTGTTTTTGAACCTCTATGGTCAAGGCAGTATATAAGGAATGTGCAGCTGATATTCTCAGAGGATTTCGGCACTGAAGGACGAGGAGGGTACTTTGATAGGTATGGTATTATCCGTGACATAATGCAGAATCATCTTCTTCAGATACTAGCCCTATTTGCAATGGAAACTCCTGTTAGCTTGGAGGCAGAGGACATAAGAAACGAAAAGGTTAAAGTTCTGCGTTCCATGAAGCCCCTGCAACTGGAAGATGTGGTGATAGGACAGTACAAAAGTCATACAAAGGGTGGTACCACATACCCTGGATACACTGAAGATAAGACGGTGCCCAAGGATAGTGTAACCCCAACATTTGCTGCAGCTGCACTTTTCATAAATAATGCTAGATGGGATGGAGTTCCTTTTCTTATGAAAGCTGGGAAGGCTTTACATACAAAGGGGGCTGAGATTAGAGTACAGTTCCGACATGTTCCTGGTAATCTTTATAAGAGGAGTTTTGGGACTGATCTTGATACAGCCACTAATGAACTTGTCATACGTGTGCAACCTGATGAAGCTATCTACTTGAAGATTAACAACAAAATTCCTGGTCTTGGTATGAGACTAGATAGAAGTAATTTGAATCTTCACTATGCAGCAAGGTACTCCAAGGAGATACCAGATGCTTATGAGAGGCTCTTACTTGATGCCATTGAAGGAGAGCGAAGGCTTTTTATCCGTTCTGATGAGTTGGATGCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAGAAGCGGATAGCCCCTGAGCTATACCCTTATGGAAGCCGCGGTCCTGTAGGGGCTCACTACCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAGGCATGAGACAGATGATATCTATTTTCGCTCCT-T-TTTTTTCTTTTGCCATTGCATTTCTGTAAGATTGCATGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCCTGTAACCATTAGACTATAAATAGCTTTGTGGTATATTCACTATTGGGTAGAATTTTGGGCTTCCTGGAAGGCAAATATAAGGTCGCGAAGTCTTTATTTTCAAAAAAAACGCGGCCGCTAGCGG]
[+] EMBL AK099891 [CTAGACTTTCGTCGATATCCCCGATAAAATCCACCCGTCTCCCCTCCTCCCCACTCGCCTTCGCCTCCATCCTCCTCCTCCTCCTGCCGGCTTGCATCCGCTCTTCCTTCCTCCAGGAGGAAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCACCACTACGGGAGTGCAAGGTGCCAAGGATGCTGGTCTGGAGAAGGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGATGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGATATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTTCACTATCTTCGGATATGCACGCAGCAAGATGACAGATGCTGAATTGAGAAACATGGTCAGCAAAACACTGACATGCAGAATAGATAAAAGGGAAAACTGTAATGAGAAGATGGAAGAGTTTTTAAAGAGATGCTTCTATCATTCAGGCCAATATGATTCAGAGGAGCATTTCATGGACCTTGACAAGAAGCTGAAACAACATGAGGGTTCCAGAGTTTCTAACCGTCTTTTCTACTTGTCAATACCACCAAATATATTCCTTGATGTTGTAAAATGTGCAAGCAAATCAGCATCATCTGGGAATGGTTGGACAAGGGTAATTGTTGAGAAACCTTTTGGTCGTGACTCAGATTCATCTTCTGCATTAACAAGGGGTCTGAAGCAGTACCTGGTAGAGGACCAAATCTTCAGGATTGACCACTACTTGGGAAAGGAACTAGTGGAGAACCTGTCTGTCCTTCGCTTCTCAAATCTTGTTTTTGAACCTCTATGGTCAAGGCAGTATATAAGGAATGTGCAGCTGATATTCTCAGAGGATTTCGGCACTGAAGGACGAGGAGGGTACTTTGATAGGTATGGTATTATCCGTGACATAATGCAGAATCATCTTCTTCAGATACTAGCCCTATTTGCAATGGAAACTCCTGTTAGCTTGGAGGCAGAGGACATAAGAAACGAAAAGGTTAAAGTTCTGCGTTCCATGAAGCCCCTGCAACTGGAAGATGTGGTGATAGGACAGTACAAAAGTCATACAAAGGGTGGTACCA ]
[+] EMBL AK064867 [ CTTTCGTCGATATCCCCGATAAAATCCACCCGTCTCCCCTCCTCCCCACTCGCCTTCGCCTCCATCCTCCTCCTCCTCCTGCCGGCTTGCATCCGCTCTTCCTTCCTCCAGGAGGAAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCACCACTACGGGAGTGCAGGGTGCCAAGGATGCTGGTCTGGAGAAGGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGATGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGATATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTTCACTATCTTCGGATATGCACGCAGCAAGATGACAGATGCTGAATTGAGAAACATGGTCAGCAAAACACTGACATGCAGAATAGATAAAAGGGAAAACTGTAATGAGAAGATGGAAGAGTTTTTAAAGAGATGCTTCTATCATTCAGGCCAATATGATTCAGAGGAGCATTTCATGGACCTTGACAAGAAGCTGAAACAACATGAGGGTTCCAGAGTTTCTAACCGTCTTTTCTACTTGTCAATACCACCAAATATATTCCTTGATGTTGTAAAATGTGCAAGCAAATCAGCATCATCTGGGAATGGTTGGACAAGGGTAATTGTTGAGAAACCTTTTGGTCGTGACTCAGATTCATCTTCTGCATTAACAAGGGGTCTGAAGCAGTACCTGGTAGAGGACCAAATCTTCAGGATTGACCACTACTTGGGAAAGGAACTAGTGGAGAACCTGTCTGTCCTTCGCTTCTCAAATCTTGTTTTTGAACCTCTATGGTCAAGGCAGTATATAAGGAATGTGCAGCTGATATTCTCAGAGGATTTCGGCACTGAAGGACGAGGAGGGTACTTTGATAGGTATGGTATTATCCGTGACATAATGCAGAATCATCTTCTTCAGATACTAGCCCTATTTGCAATGGAAACTCCTGTTAGCTTGGAGGCAGAGGACATAAGAAACGAAAAGGTTAAAGTTCTGCGTTCCATGAAGCCCCTGCAACTGGAAGATGTGGTGATAGGACAGTACAAAAGTCATACAAAGGGTGGTACCACATACCCTGGATACACTGAAGATAAGACGGTGCCCAAGGATAGTGTAACCCCAACATTTGCTGCAGCTGCACTTTTCATAAATAATGCTAGATGGGATGGAGTTCCTTTTCTTATGAAAGCTGGGAAGGCTTTACATACAAAGGGGGCTGAGATTAGAGTACAGTTCCGACATGTTCCTGGTAATCTTTATAAGAGGAGTTTTGGGACTGATCTTGATACAGCCACTAATGAACTTGTCATACGTGTGCAACCTGATGAAGCTATCTACTTGAAGATTAACAACAAAATTCCTGGTCTTGGTATGAGACTAGATAGAAGTAATTTGAATCTTCACTATGCAGCAAGGTACTCCAAGGAGATACCAGATGCTTATGAGAGGCTCTTACTTGATGCCATTGAAGGAGAGCGAAGGCTTTTTATCCGTTCTGATGAGTTGGATGCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAGAAGCGGATAGCCCCTGAGCTATACCCTTATGGAAGCCGCGGTCCTGTAGGGGCTCACTACCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAGGCATGAGACAGATGATATCTATTTTCGCTCCT T TTTTTTCTTTTGCCATTGCATTTCTGTAAGATTGCATGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCCTGTAACCATTAGACTATAAATAGCTTTGTGGTATATTC ]
[+] EMBL CB641234 [ TGCATCCGCTCTTCCTTCCTCCAGGAGGAAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCACCACTACGGGAGTGCAAGGTGCCAAGGATGCTGGTCTGGAGAAAGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAACACTTGAGCCCTCTATCACAAAATGATGACTCCACTGTTAGTATCACTGTATTTGGAGCATCTGGT ]
[+] EMBL CB641016 [ TGCATCCGCTCTTCCTTCCTCCAGGAGGAAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCACCACTACGGGAGTGCAAGGTGCCAAGGATGCTGGTCTGGAGAAGGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGATGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGATATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTTCACTATCTTCGGATATGCACGCAGCAAGATGACAGATGCTGAATTGAGAAACATGGTCAGCAAAACACTGACATGCAGAATAGATAAAAGGGAAAACTGTAATGAGAAGATGGAAGAGTTTTTAAAGAGATGCTTCTATCATTCAGGCC ]
[+] EMBL CB641235 [ TGCATCCGCTCTTCCTTCCTCCAGGAGGAAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCTCCGCCGTCACCACTACGGGAGTGCAAGGTGCCAAGGATGCTGGTCTGGAGAAGGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGATGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGATATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTCCACTATCTTCGGATATGCACGCAGCAAGATGAC ]
[+] EMBL AY339367 [ CTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACGACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTTGCCAGATGCGGCCTCCGTAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCGCCACTACGGGAGTGCAAGGTGCCAAGGATGCTGGTCTGGAGAAAGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGGCTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGATGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGATATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTTCACTATCTTCGGATATGCACGCAGCAAGATGACAGATGCTGAATTGAGAAACATGGTCAGCAAAACACTGACATGCAGAATAGATAAAAGGGAAAACTGTAATGAGAAGATGGAAGAGTTTTTAAAGAGATGCTTCTATCATTCAGGCCAATATGATTCAGAGGAGCATTTCATGGACCTTGACAAGAAGCTGAAACAACATGAGGGTTCCAGAGTTTCTAACCGTCTTTTCTACTTGTCAATACCACCAAATATATTCCTTGATGTTGTAAAATGTGCAAGCAAATCAGCATCATCTGGGAATGGTTGGACAAGGGTAATTGTTGAGAAACCTTTTGGTCGTGACTCAGATTCATCTTCTGCATTAACAAGGGGTCTGAAGCAGTACCTGGTAGAGGACCAAATCTTCAGGATTGACCACTACTTGGGAAAGGAACTAGTGGAGAACCTGTCTGTCCTTCGCTTCTCAAATCTTGTTTTTGAACCTCTATGGTCAAGGCAGTATATAAGGAATGTGCAGCTGATATTCTCAGAGGATTTCGGCACTGAAGGACGAGGAGGGTACTTTGATAGGTATGGTATTATCCGTGACATAATGCAGAATCATCTTCTTCAGATACTAGCCCTATTTGCAATGGAAACTCCTGTTAGCTTGGAGGCAGAGGACATAAGAAACGAAAAGGTTAAAGTTTTGCGTTCCATGAAGCCCCTGCAACTGGAAGATGTGGTGATAGGACAGTACAAAAGTCATACAAAGGGTGGTACCACATACCCTGGATACACTGAAGATAAGACGGTGCCCAAGGATAGTGTCACCCCAACATTTGCTGCAGCTGCACTTTTCATAAATAATGCTAGATGGGATGGAGTTCCTTTTCTTATGAAAGCTGGGAAGGCTTTACATACAAAAGGGGCTGAGATTAGAGTACAGTTCCGACATGTTCCTGGTAATCTTTATAAGAGGAGTTTTGGGACTGATCTTGATACAGCCACTAATGAACTTGTCATACGTGTGCAACCTGATGAAGCTATCTACTTGAAGATTAACAACAAAATTCCTGGTCTTGGTATGAGACTAGATAGAAGTAATTTGAATCTTCACTATGCAGCAAGGTACTCCAAGGAGATACCAGATGCTTATGAGAGGCTCTTACTTGATGCCATTGAAGGAGAGCGAAGGCTTTTTATCCGTTCTGATGAGTTGGATGCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAGAAGCGGATAGCCCCTGAGCTATACCCTTATGGAAGCCGCGGTCCTGTAGGGGCTCACTACCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACA ]
[+] EMBL AU225915 [ gccgctCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAGGCATGAGACAGATGATATCTATTTTCGCTCCTGTGTTTTTTCTTTTGCCATTGCATTTCTGTAAGATTGCATGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCCTGTAACCATTAGACTATAAATAGCTTTGTGGTATATTCACTATTGGGTAGAATTTTGGGCTTCCTGGAAGGCAAATATAAGGTCGCGAAGTCTTTATTTTCAAAAAAAACGCGGCCGCTAGCGG]
consensusID : consensus_12703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[CGCCCCTGGGCTCGGTATCTTTATAAGGAGGAGGTTTGGGGCCTGATTCTGATACAAGCCCCTAATGAACCTGTCATACGTGTGCAACCTGATGAAGCTATCTCCTTGAAGATTAACAACAAAATTCCTGGTCTTGGTATGAGGCTAGATAGAAGTAATTTGAATCTTCCCTATGCAGCAAGGTACTCCAAGGAGATACCAGATGCTTTTGAGAGGCTCTTACTTGATGCCCTTGAAGGAGAGCGAAGGCTTTTTATCCGTTTTGATGAGTTGGATGCCGCATGGGAGCTCTTCCCTCCCTTACTCAAGGAGCTGGAAAAGAAACGGATAGCCCCTGAGCTATACCCTTATGGAAACCCCGGTCCTGTTGGGGCTCCCTACCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGCCCCCAGAACAGAAGGCCTGAGACCGATGATATCTATTTTCGCTCCCTTTTTTTCTTTTGCCCTTGCCTTTCTGTAAGATTGCCTGCTCAGTTAGTGGGACAGATGGAAAATAAGGCCATCAGTTAGCTTAGGTTGCAAGGCCCGTAACCCTTAGGCTATAAATAGCTTTGTGGTATATTCCCTATTGGGTAGAATTTTGGGCTTCCTGGAAGTCAAATATAAGGTCCCGAAGTCTTTTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760004 [CGCCCCTGGGCTCGGTATCTTTATAAGGAGGAGGTTTGGGGCCTGATTCTGATACAAGCCCCTAATGAACCTGTCATACGTGTGCAACCTGATGAAGCTATCTCCTTGAAGATTAACAACAAAATTCCTGGTCTTGGTATGAGGCTAGATAGAAGTAATTTGAATCTTCCCTATGCAGCAAGGTACTCCAAGGAGATACCAGATGCTTTTGAGAGGCTCTTACTTGATGCCCTTGAAGGAGAGCGAAGGCTTTTTATCCGTTTTGATGAGTTGGATGCCGCATGGGAGCTCTTCCCTCCCTTACTCAAGGAGCTGGAAAAGAAACGGATAGCCCCTGAGCTATACCCTTATGGAAACCCCGGTCCTGTTGGGGCTCCCTACCTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGCCCCCAGAACAGAAGGCCTGAGACCGATGATATCTATTTTCGCTCCCTTTTTTTCTTTTGCCCTTGCCTTTCTGTAAGATTGCCTGCTCAGTTAGTGGGACAGATGGAAAATAAGGCCATCAGTTAGCTTAGGTTGCAAGGCCCGTAACCCTTAGGCTATAAATAGCTTTGTGGTATATTCCCTATTGGGTAGAATTTTGGGCTTCCTGGAAGTCAAATATAAGGTCCCGAAGTCTTTTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[ANTNTTNNTAATNNNGNGCGNNNCNCTNAANGAAACCGTTNNNNNTTGNAAGGTTNCCACGAANTTNCCTGGGTNTTGGNTATGAGACTAGANAGAAGTAATTTGATTCTTTCNGTTATGNAGCAAGGTCCNCCAAAGNAGATCCCANATGNTTTTGAGAGGCCTCGTTNCTTGAGGGCCNTTGAAGAANANCGAAGNCTTTTTATCCGGTTNTAATGAGTTGGATCCCGCATGGGANCTCTTCACTCCCTTGCTCAAGGAGCTGGAANANAANCGGATAGCCCCTGAGCTATACCCTTATGGAAGCNGCGGTCCTGTAGGGNCTCNNTACCTTGCAGCAAAGTACAACGTNANATGGGGTGATTTGTCCACAGAACAGAAGGCATGACCCAGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTGCCATTGCATTTCTGTAAGATTGCCTGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCCTGTAACCATTACCCTATAAATAGCTTTGTGGTATATTCACTATTGGGTAGAATTTTGGCCTTCCTGCAAGGCAAATATAAGGTCNCGAAGTCTTTATTTTCCANTAAAAAAAAAA]
[+] EMBL AT003379 [ANTNTTNNTAATNNNGNGCGNNNCNCTNAANGAAACCGTTNNNNNTTGNAAGGTTNCCACGAANTTNCCTGGGTNTTGGNTATGAGACTAGANAGAAGTAATTTGATTCTTTCNGTTATGNAGCAAGGTCCNCCAAAGNAGATCCCANATGNTTTTGAGAGGCCTCGTTNCTTGAGGGCCNTTGAAGAANANCGAAGNCTTTTTATCCGGTTNTAATGAGTTGGATCCCGCATGGGANCTCTTCACTCCCTTGCTCAAGGAGCTGGAANANAANCGGATAGCCCCTGAGCTATACCCTTATGGAAGCNGCGGTCCTGTAGGGNCTCNNTACCTTGCAGCAAAGTACAACGTNANATGGGGTGATTTGTCCACAGAACAGAAGGCATGACCCAGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTGCCATTGCATTTCTGTAAGATTGCCTGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCCTGTAACCATTACCCTATAAATAGCTTTGTGGTATATTCACTATTGGGTAGAATTTTGGCCTTCCTGCAAGGCAAATATAAGGTCNCGAAGTCTTTATTTTCCANTAAAAAAAAAA]
consensusID : consensus_12703#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[TCCCAGGTTTCCCGAACCATGGTTCCCTGGTTAAATCNTTTAATAAAGAGGATTTTTTGGGGACCTGACTTGGATCACCACCCCACCTAGATGAACTTGTCCATACCGTGGTGCCANCCTGGATGAAGCTATCTACTTGAAGATTACACCCCCAAATTTCCTGTCTTGGTATGAGACTAGATTAGAAGTAATTTGAATCTTCACCTATCCAANCCAGGTACTCCCAGGAGATACCAGATGCTTATGAGAGGCTCTTACTTGATCCTTGAAGGAGAGCGAAGGCTTTTTATCCGTTCTGATGAGTTGGATCCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAGAACGGATAGCCCCTGAGCTATACCCTTATGGAACCCGGTCCTGTAGGGGCTCACTACCTTCACAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAGCATGAGACAGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTCCCTTGCATTTCTGTAAGATTGCATGCTCAGTTAGTGGGACAGATGGAAAATAAGCCAATCAGTTAGCTTAGTTCAAGCCTGTAACCATTAGACTATAAATAGCTTTGTGGTAAAAAAAAAA]
[+] EMBL BI806316 [TCCCAGGTTTCCCGAACCATGGTTCCCTGGTTAAATCNTTTAATAAAGAGGATTTTTTGGGGACCTGACTTGGATCACCACCCCACCTAGATGAACTTGTCCATACCGTGGTGCCANCCTGGATGAAGCTATCTACTTGAAGATTACACCCCCAAATTTCCTGTCTTGGTATGAGACTAGATTAGAAGTAATTTGAATCTTCACCTATCCAANCCAGGTACTCCCAGGAGATACCAGATGCTTATGAGAGGCTCTTACTTGATCCTTGAAGGAGAGCGAAGGCTTTTTATCCGTTCTGATGAGTTGGATCCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAGAACGGATAGCCCCTGAGCTATACCCTTATGGAACCCGGTCCTGTAGGGGCTCACTACCTTCACAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAGCATGAGACAGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTCCCTTGCATTTCTGTAAGATTGCATGCTCAGTTAGTGGGACAGATGGAAAATAAGCCAATCAGTTAGCTTAGTTCAAGCCTGTAACCATTAGACTATAAATAGCTTTGTGGTAAAAAAAAAA]
consensusID : consensus_12703#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[ACAACGTCANATGGGGTGATTTGACCACAGAACAGAAGGCATGAGACAGATGATATCTATTTTCGCNCCTTTTTTTTCTTTTGGCCATTGCATTTCTGTAANATTNCATGCTCAGTTANTGGGACANATGGNAAATAAGGCAATCAGTTANCTTAGGTTNCAAGGCCTGTAACCATTAGACTATAAATANCTTTGTGGTATATTCACTATTGGGTANAATTTTGGGCTTCCTGGAAGGCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C96871 [ACAACGTCANATGGGGTGATTTGACCACAGAACAGAAGGCATGAGACAGATGATATCTATTTTCGCNCCTTTTTTTTCTTTTGGCCATTGCATTTCTGTAANATTNCATGCTCAGTTANTGGGACANATGGNAAATAAGGCAATCAGTTANCTTAGGTTNCAAGGCCTGTAACCATTAGACTATAAATANCTTTGTGGTATATTCACTATTGGGTANAATTTTGGGCTTCCTGGAAGGCAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12703#0 CTAGACTTTCGTCGATATCCCCGATAAAATCCACCCGTCTCCCCTCCTCCCCACTCGCCT 60
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TCGCCTCCATCCTCCTCCTCCTCCTGCCGGCTTGCATCCGCTCTTCCTTCCTCCAGGAGG 120
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AAGGCATACAGGCATGGCGCTCTCCTGCATGAGGTGCTCCCCGGCCGCCGGCGCCGTACG 180
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 ACGAGGATTGGCATCGGCGGCTCCGCCGGCGGCGCTCTCCTTCGCCAGATGCGGCCTCCG 240
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TAGAGCGGCCGCGCTCGGGTGGCGCGTCGCCGCCGTCACCACTACGGGAGTGCAAGGTGC 300
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 CAAGGATGCTGGTCTGGAGAAGGCTGCCAGAAGTGCTTCCCAATCAAAGGTGGAAAATGG 360
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 CTCACCTTCAGAAATCATTTTAGATGATTTTGAAGACTTGAGCCCTCTATCAGAAAATGA 420
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TGACTCCACTGTTAGTATCACTGTAGTCGGAGCATCTGGTGACCTTGCCAAGAAGAAGAT 480
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 ATTTCCTGCACTTTTTGCTCTATACTATGAAGATTGTCTTCCAAAGCATTTCACTATCTT 540
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 CGGATATGCACGCAGCAAGATGACAGATGCTGAATTGAGAAACATGGTCAGCAAAACACT 600
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 GACATGCAGAATAGATAAAAGGGAAAACTGTAATGAGAAGATGGAAGAGTTTTTAAAGAG 660
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 ATGCTTCTATCATTCAGGCCAATATGATTCAGAGGAGCATTTCATGGACCTTGACAAGAA 720
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 GCTGAAACAACATGAGGGTTCCAGAGTTTCTAACCGTCTTTTCTACTTGTCAATACCACC 780
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AAATATATTCCTTGATGTTGTAAAATGTGCAAGCAAATCAGCATCATCTGGGAATGGTTG 840
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 GACAAGGGTAATTGTTGAGAAACCTTTTGGTCGTGACTCAGATTCATCTTCTGCATTAAC 900
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AAGGGGTCTGAAGCAGTACCTGGTAGAGGACCAAATCTTCAGGATTGACCACTACTTGGG 960
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AAAGGAACTAGTGGAGAACCTGTCTGTCCTTCGCTTCTCAAATCTTGTTTTTGAACCTCT 1020
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 ATGGTCAAGGCAGTATATAAGGAATGTGCAGCTGATATTCTCAGAGGATTTCGGCACTGA 1080
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AGGACGAGGAGGGTACTTTGATAGGTATGGTATTATCCGTGACATAATGCAGAATCATCT 1140
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TCTTCAGATACTAGCCCTATTTGCAATGGAAACTCCTGTTAGCTTGGAGGCAGAGGACAT 1200
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AAGAAACGAAAAGGTTAAAGTTCTGCGTTCCATGAAGCCCCTGCAACTGGAAGATGTGGT 1260
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 GATAGGACAGTACAAAAGTCATACAAAGGGTGGTACCACATACCCTGGATACACTGAAGA 1320
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TAAGACGGTGCCCAAGGATAGTGTAACCCCAACATTTGCTGCAGCTGCACTTTTCATAAA 1380
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TAATGCTAGATGGGATGGAGTTCCTTTTCTTATGAAAGCTGGGAAGGCTTTACATACAAA 1440
consensus_12703#3 -------------------------------------------------------TCCCA 5
consensus_12703#1 ------------------------------------------------------------
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 GGGGGCTGAGATTAGAGTACAGTTCCGACATGTTCCTGGTAATCTTTATAAGAGGAGTTT 1500
consensus_12703#3 GGTTTCCCGAACCATGGTTCCCTGGTTAAATCNTTTAATAAAGAGGATTTTTTGGGGACC 65
consensus_12703#1 ---------------CGCCCCTGGGCTCGGTATCTTTATAAGGAGGAGGTTT--GGGGCC 43
consensus_12703#2 ------------------------------------------------------------
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TGGGACTGATCTTGATACAGCCACTAATGAACTTGTC-ATAC-GTG-TGCAACCT--GAT 1555
consensus_12703#3 TGACTTGGATCACCACCCCACC-TAGATGAACTTGTCCATACCGTGGTGCCANCCTGGAT 124
consensus_12703#1 TGATTCTGAT-ACAAGCCC----CTAATGAACCTGTC-ATAC-GTG-TGCAACCT--GAT 93
consensus_12703#2 ----------------------------ANTNTTNNTAATNNNGNGCGNNNCNCTNAANG 32
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 GAAGCTATCTACTTGAAGATTA-ACAACAAAATTCCTGG---TCTTGGTATGAGACTAGA 1611
consensus_12703#3 GAAGCTATCTACTTGAAGATTACACCCCCAAATTTCCTG---TCTTGGTATGAGACTAGA 181
consensus_12703#1 GAAGCTATCTCCTTGAAGATTA-ACAACAAAATTCCTGG---TCTTGGTATGAGGCTAGA 149
consensus_12703#2 AAACCGTTNNNNNTTGNAAGGTTNCCACGAANTTNCCTGGGTNTTGGNTATGAGACTAGA 92
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 T-AGAAGTAATTTGAATCTTCAC-TATGCA-GCAAGGTACTCCAA-GGAGATACCAGATG 1667
consensus_12703#3 TTAGAAGTAATTTGAATCTTCACCTATCCAANCCAGGTACTCCCA-GGAGATACCAGATG 240
consensus_12703#1 T-AGAAGTAATTTGAATCTTCCC-TATGCA-GCAAGGTACTCCAA-GGAGATACCAGATG 205
consensus_12703#2 N-AGAAGTAATTTGATTCTTTCNGTTATGNAGCAAGGTCCNCCAAAGNAGATCCCANATG 151
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 CTTATGAGAGGCTC--TTACTTGATG-CCATTGAAGGAGAGCGAAGGCTTTTTATCCG-T 1723
consensus_12703#3 CTTATGAGAGGCTC--TTACTTGATC-C--TTGAAGGAGAGCGAAGGCTTTTTATCCG-T 294
consensus_12703#1 CTTTTGAGAGGCTC--TTACTTGATG-CCCTTGAAGGAGAGCGAAGGCTTTTTATCCG-T 261
consensus_12703#2 NTTTTGAGAGGCCTCGTTNCTTGAGGGCCNTTGAAGAANANCGAAGNCTTTTTATCCGGT 211
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 TCTGATGAGTTGGATGCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAG 1783
consensus_12703#3 TCTGATGAGTTGGATCCCGCATGGGAGCTCTTCACTCCCTTACTCAAGGAGCTGGAAGAG 354
consensus_12703#1 TTTGATGAGTTGGATGCCGCATGGGAGCTCTTCCCTCCCTTACTCAAGGAGCTGGAAAAG 321
consensus_12703#2 TNTAATGAGTTGGATCCCGCATGGGANCTCTTCACTCCCTTGCTCAAGGAGCTGGAANAN 271
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 AAGCGGATAGCCCCTGAGCTATACCCTTATGGAAGCCGCGGTCCTGTAGGGGCTCACTAC 1843
consensus_12703#3 AA-CGGATAGCCCCTGAGCTATACCCTTATGGAACCC--GGTCCTGTAGGGGCTCACTAC 411
consensus_12703#1 AAACGGATAGCCCCTGAGCTATACCCTTATGGAAACCCCGGTCCTGTTGGGGCTCCCTAC 381
consensus_12703#2 AANCGGATAGCCCCTGAGCTATACCCTTATGGAAGCNGCGGTCCTGTAGGGNCTCNNTAC 331
consensus_12703#4 ------------------------------------------------------------
consensus_12703#0 CTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAGGCATGAGAC 1903
consensus_12703#3 CTT-CA--CAAGTACAACGTCAGATGGGGTGATTTGACCACAGAACAGAAG-CATGAGAC 467
consensus_12703#1 CTTGCAGCAAAGTACAACGTCAGATGGGGTGATTTGCCCCCAGAACAGAAGGCCTGAGAC 441
consensus_12703#2 CTTGCAGCAAAGTACAACGTNANATGGGGTGATTTGTCCACAGAACAGAAGGCATGACCC 391
consensus_12703#4 -------------ACAACGTCANATGGGGTGATTTGACCACAGAACAGAAGGCATGAGAC 47
******* * ************* ** *********** * *** *
consensus_12703#0 AGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTG-CCATTGCATTTCTGTAAGATTGC 1962
consensus_12703#3 AGATGATATCTATTTTCGCTCCTTTTTTTTCTTTT--CCCTTGCATTTCTGTAAGATTGC 525
consensus_12703#1 CGATGATATCTATTTTCGCTCCCTTTTTTTCTTTTG-CCCTTGCCTTTCTGTAAGATTGC 500
consensus_12703#2 AGATGATATCTATTTTCGCTCCTTTTTTTTCTTTTG-CCATTGCATTTCTGTAAGATTGC 450
consensus_12703#4 AGATGATATCTATTTTCGCNCCTTTTTTTTCTTTTGGCCATTGCATTTCTGTAANATTNC 107
****************** ** ************ ** **** ********* *** *
consensus_12703#0 ATGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCC 2022
consensus_12703#3 ATGCTCAGTTAGTGGGACAGATGGAAAATAAGCCAATCAGTTAGCTTAGTTC---AAGCC 582
consensus_12703#1 CTGCTCAGTTAGTGGGACAGATGGAAAATAAGGCCATCAGTTAGCTTAGGTTGCAAGGCC 560
consensus_12703#2 CTGCTCAGTTAGTGGGACAGATGGAAAATAAGGCAATCAGTTAGCTTAGGTTGCAAGGCC 510
consensus_12703#4 ATGCTCAGTTANTGGGACANATGGNAAATAAGGCAATCAGTTANCTTAGGTTNCAAGGCC 167
********** ******* **** ******* * ******** ***** * * ***
consensus_12703#0 TGTAACCATTAGACTATAAATAGCTTTGTGGTATATTCACTATTGGGTAGAATTTTGGGC 2082
consensus_12703#3 TGTAACCATTAGACTATAAATAGCTTTGTGGTAAAAAAAAAA------------------ 624
consensus_12703#1 CGTAACCCTTAGGCTATAAATAGCTTTGTGGTATATTCCCTATTGGGTAGAATTTTGGGC 620
consensus_12703#2 TGTAACCATTACCCTATAAATAGCTTTGTGGTATATTCACTATTGGGTAGAATTTTGGCC 570
consensus_12703#4 TGTAACCATTAGACTATAAATANCTTTGTGGTATATTCACTATTGGGTANAATTTTGGGC 227
****** *** ********* ********** * *
consensus_12703#0 TTCCTGGAAGGCAAATATAAGGTCGCGAAGTCTTTATTTTCAAAAAAAACGCGGCCGCTA 2142
consensus_12703#3 ------------------------------------------------------------
consensus_12703#1 TTCCTGGAAGTCAAATATAAGGTCCCGAAGTCTTTTTTTTCCAAAAAAAAAAAAAAAAAA 680
consensus_12703#2 TTCCTGCAAGGCAAATATAAGGTCNCGAAGTCTTTATTTTCCANTAAAAAAAAAA----- 625
consensus_12703#4 TTCCTGGAAGGCAAAAAAAAAAAAAAAAAAAA---------------------------- 259
consensus_12703#0 GCGG----- 2146
consensus_12703#3 ---------
consensus_12703#1 AAAAAAAAA 689
consensus_12703#2 ---------
consensus_12703#4 ---------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||