Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12706 cluster # 12706       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12706#0 length = 1298 sequences # 10  
consensus_12706#1 length = 740 sequences # 1  

consensusID : consensus_12706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1298
fasta sequence
                              [CTCTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTAT-GGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAAT-TTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAAC-TTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAA-CCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATCAATAAAGCTATGTACTTCCAAGTGCCAAAAACCAAAAAAAA]

[+] EMBL AK068687             [CTCTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTAT GGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAAT TTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAAC TTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAA CCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATCAATAAAGCTATGTACT                         ]
[+] EMBL AK103102             [CTCTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTAT GGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAAT TTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAAC TTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAA CCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATCAATAAAGCTATGTACT                         ]
[+] EMBL CF310607             [  CTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCTTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTAT GGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAA GGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK104035             [                         CCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTAT GGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAAT TTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAAC TTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAA CCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTCCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATCAATAAAGCTATGTACTT                        ]
[+] EMBL CF319985             [                                        tgaaGAGTA GAAAAGTC GAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACTCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTAT GGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAAT TTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF308993             [                                                              gcAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTATTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATATGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAA GGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCT GCAATNTTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAACTTTTTCAGTCTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF308994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAAC TTTTCAGTCTCCATGGCATTATACGCATTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAA CCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATCAATAAAGCTATGTACTTCCAAGTGCCAATCACCAAAAAA  ]
[+] EMBL BQ906151             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAAC TTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAA CCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCTGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGNNGAACACAATATCATGTTGGACCGAaaaaaaa                                                                                          ]
[-] EMBL CF310608             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATACGCACTGGTTATTTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCCTCTTGCAAAATTCTTATGCATCAAAGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGAATGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCATATCCATTATCAATAAAGTCATGTACTTCCAAGTGCCAAAA           ]
[-] EMBL CF319986             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCATTAGAGGTTTTAGCTGCCGTAGGGATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAATGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGTTGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTTTTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTCCAATCATTAGAAAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTGAGGATCTTGTGTGTACACTGTACAGAGCAGCCTTTGGAGGCAAGCAAATCCATTATCAATAAAGCTATGTACTTCCAAGTGCCAAAAAAAAAAAAAAA]


>consensus_12706#0 CTCTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAG AGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACT GTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGC CTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTA TTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATA TGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTT CTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGCACTGAT GTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAG GGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCA TAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGTTAGGCCCATATG CGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGAC ATTCACAATCATACTGAACTTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTA CCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCAAAATTCTTATGCATCAA AGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGG GATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAA TGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGT TGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGAATGATCCAGGTT TTGTACTGAGTAATACCCTCCAGCTCTTGTATGATATCTCTCTGTATGGACTCACAGTGT TATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGAAAG CTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGACTG AGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATCAAT AAAGCTATGTACTTCCAAGTGCCAAAAACCAAAAAAAA



consensusID : consensus_12706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence
                              [CTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAACTTTTCAGTCTCCATGGCATTATACGCACTGGTTATNTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCCAAATNCTTATGCATCANAGGGATNNGTCTCTNNCTCTTCTGGCANGGGTNTGCATAGAGGTNNTAGCTGCCGTAGGGATCATNCAGTCCCACATNTCTGGTNNGGACGTGACACATCCANGAAGGCATCAGAAATGTCTGGTGACATCGAAATGGTCTCNTNCTCGGTCTCACCATATGCCTACCATGTGCTCATCANCNGGCTGACGGCCNGANTCAGAGNANNANTGATATCAGCTNGTACGCTAACTCGCTGATGATCCCGATGACCCCAGTATACCACGTCNATG]

[+] EMBL CA753008             [CTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGCACTGATGTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGTTAGGCCCATATGCGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCATACTGAACTTTTCAGTCTCCATGGCATTATACGCACTGGTTATNTTCTACCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCCAAATNCTTATGCATCANAGGGATNNGTCTCTNNCTCTTCTGGCANGGGTNTGCATAGAGGTNNTAGCTGCCGTAGGGATCATNCAGTCCCACATNTCTGGTNNGGACGTGACACATCCANGAAGGCATCAGAAATGTCTGGTGACATCGAAATGGTCTCNTNCTCGGTCTCACCATATGCCTACCATGTGCTCATCANCNGGCTGACGGCCNGANTCAGAGNANNANTGATATCAGCTNGTACGCTAACTCGCTGATGATCCCGATGACCCCAGTATACCACGTCNATG]


>consensus_12706#1 CTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTTCTTGGATGCTGT CAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGCACTGATGTACAGCTATTT GAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAGGGTGCTTCATCA TTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCATAAAACACTGAA GCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGTTAGGCCCATATGCGCCATTCTAAT GATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGACATTCACAATCAT ACTGAACTTTTCAGTCTCCATGGCATTATACGCACTGGTTATNTTCTACCACTTGTTTGC AAAAGAGCTGGCACCTCACAAACCTCTTGCCAAATNCTTATGCATCANAGGGATNNGTCT CTNNCTCTTCTGGCANGGGTNTGCATAGAGGTNNTAGCTGCCGTAGGGATCATNCAGTCC CACATNTCTGGTNNGGACGTGACACATCCANGAAGGCATCAGAAATGTCTGGTGACATCG AAATGGTCTCNTNCTCGGTCTCACCATATGCCTACCATGTGCTCATCANCNGGCTGACGG CCNGANTCAGAGNANNANTGATATCAGCTNGTACGCTAACTCGCTGATGATCCCGATGAC CCCAGTATACCACGTCNATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12706#0      CTCTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAG 60
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      AGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGGCGCCATGTCGATGTCACT 120
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      GTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGC 180
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      CTGCTGTGTAATGCTATCGATGCATTTTACAGTACAGTTGGTGTCGCAGCATCTTTTCTA 240
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      TTGGAAGAATCCCAAGGAGCAGAAGGCTATACTTATTATCGTTCTCATGGCTCCCTTATA 300
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      TGCTATAAATTCCTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTT 360
consensus_12706#1      ------------CTTTGTTGGTCTTCTGGATATCAAGGGAAGCAAAACATTTTTCACTTT 48
                                   ************************************************

consensus_12706#0      CTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGCACTGAT 420
consensus_12706#1      CTTGGATGCTGTCAAAGAATGCTACGAGGCACTGGCTATTGCTAAGTTTATGGCACTGAT 108
                       ************************************************************

consensus_12706#0      GTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAG 480
consensus_12706#1      GTACAGCTATTTGAATATATCTATTAGTAAGAACATAGTTCCTGATGAGATCAAAGGGAG 168
                       ************************************************************

consensus_12706#0      GGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCA 540
consensus_12706#1      GGTGCTTCATCATTCCTTCCCTGTTTCCCTTTTCCTGCCCCGCAATGTTCGATTGGAGCA 228
                       ************************************************************

consensus_12706#0      TAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGTTAGGCCCATATG 600
consensus_12706#1      TAAAACACTGAAGCTTCTGAAGTACTGGACCTGGCAATTTGTTGTTGTTAGGCCCATATG 288
                       ************************************************************

consensus_12706#0      CGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGAC 660
consensus_12706#1      CGCCATTCTAATGATTACTCTTCAGCTTCTTGGTCTGTACCCCAGTTGGGTCAGCTGGAC 348
                       ************************************************************

consensus_12706#0      ATTCACAATCATACTGAACTTTTCAGTCTCCATGGCATTATACGCACTGGTTATTTTCTA 720
consensus_12706#1      ATTCACAATCATACTGAACTTTTCAGTCTCCATGGCATTATACGCACTGGTTATNTTCTA 408
                       ****************************************************** *****

consensus_12706#0      CCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCAAAATTCTTATGCATCAA 780
consensus_12706#1      CCACTTGTTTGCAAAAGAGCTGGCACCTCACAAACCTCTTGCCAAATNCTTATGCATCAN 468
                       ****************************************** **** *********** 

consensus_12706#0      AGGGATTGTCTTCTTCTCTTTCTGGCAGGGTTTTGCATTAGAGGTTTTAGCTGCCGTAGG 840
consensus_12706#1      AGGGATNNGTCTCTNNCTCTTCTGGCANGGGTNTGCAT-AGAGGTNNTAGCTGCCGTAGG 527
                       ******     ***     ******** ** * ***** ******  *************

consensus_12706#0      GATCATTCAGTCCCACCATTTCTGGTTGGACGTGGAGCACATCCAGGAGGCAATCCAGAA 900
consensus_12706#1      GATCATNCAGTCCCAC-ATNTCTGGTNNGG-ACGTGACACATCCANGAAGGCATCAGAAA 585
                       ****** ********* ** ******  *    *   ******** ** *  ***   **

consensus_12706#0      TGTCTTGGTGATCATCGAAATGGTCTTCTTCTCCGTTCTCCAACAATATGCTTACCATGT 960
consensus_12706#1      TGTCT-GGTGA-CATCGAAATGGTCTCNTNCTCGGTCTC---ACCATATGCCTACCATGT 640
                       ***** ***** **************  * *** **      ** ****** ********

consensus_12706#0      TGCTCCATACAGCGGGGCTGACAGGGCGAAATTCGAGAAGAAGAATGA-ATGATCCAGGT 1019
consensus_12706#1      -GCTC---ATCANCNGGCTGAC--GGCCNGANTC-AGAGNANNANTGATATCAGCTNGTA 693
                        ****   *      *******  ***   * ** ***  *  * *** ** * *  *  

consensus_12706#0      TTTGTACTGAGTAATACCCTCCA--GCTCTTGTATGATATCTCTCTGTATGGACTCACAG 1077
consensus_12706#1      CGCTAACTCGCTGATGATCCCGATGACCCCAGTATACCACGTCNATG------------- 740
                            ***   * **   * * *   * *  ****   *  **  **             

consensus_12706#0      TGTTATAAACTCAGTGTTTCTTATGCACACGAGTAGAGTAAGTACATTACAATCATTAGA 1137
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      AAGCTAGAGGTGCCTGAATAAGTGGTGGTTTCGTCTTGTTGTACACAATATCATGTTGGA 1197
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      CTGAGGATCTTGTGTGTACACTGTACAGTGCAGCCTTTGGAGGCAAGCAAATCCATTATC 1257
consensus_12706#1      ------------------------------------------------------------
                                                                                   

consensus_12706#0      AATAAAGCTATGTACTTCCAAGTGCCAAAAACCAAAAAAAA 1298
consensus_12706#1      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)