These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 802 fasta sequence [AGCCAGCGAGCGAGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG-GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAACAAAAAAGGGGAGATGTTTCAGCTAAAAAAAAAAAAAAAAA] [+] EMBL OSS15423A [AGCCAGCGAGCGAGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGA GGGCAGCCGNCGGCTCGGGGTGGTGCGCGCGGCCAGCG GGAG GTGGCCGCGCCCGACGNCGNCGNCGNCGNTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATNCCCAAGATCACCCAGGNCCTCGAGGGGTTGGAGGTGGTGAGNGACCTGGAGGTGGTC ] [+] EMBL CB683803 [ AGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTT ] [+] EMBL OSS12318A [ AGCAAGATGATGATGACCATGTCGTCGCCGGC GNCACCGNCTGCCTCCCCGNCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGTTCTGGCCCGGA GGGCAGNCGCCGGCTCGGGGTGGTGCGCGCGGCCAG G GGAGTGTGGCCGCGACCGACGNCGACGNCGNCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGTAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGNNGACGACGGTG ] [+] EMBL CB673734 [ ACCATGTCCTTGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAACCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGT ] [-] EMBL CB683355 [ CCGCTCCCTTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGNTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGCCCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATCCGATTTGCTCATGTTATTGGCCCTCTTCAACATTTTGTTTAGTCGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCACCAAAGGAGGAAACGGTGTTTTTCCTTGTGTATTTTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAACAACAAAGGG ] [-] EMBL CB673735 [ TTCGCCTCCTCCGCGGAGCTCTGGCCCGGAGGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGAG GTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGNTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCAGATTCAGAGAAAGTGTTCTGA ] [+] EMBL AU174104 [ CGAGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTGTGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTTAATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTAaaaaaa ] [+] EMBL AU198228 [ GCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGNCGATTTTAATGAGGATGCAGCCCCAGTCGCAGGAGAGGATGACGACCAAGCCNCAGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCNCTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCANAGAAAGTGTTCTGATTTTTTTTCAAGGTCCATATTAATTTGTTGAGATGTTTCAGCTAAAAAAAAAAAAAAAAA] [+] EMBL AU096162 [ nGAGTGAGTGACTATGTCATGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTTTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAAAAAAAA ] consensusID : consensus_12717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [NGAGTGATGATGACATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGANCTCTGGCCCGGANGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGANGTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGANGGTACCATGGAGGANANGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGNAAGTGCTCATCGANGAAGCATCGGAAGTGTTGTGTTGACAAANGAGACNACGGTGCAANCTACCGGGGTGGGCTCAAACCTGGTTNAAACCATCCANGGAACTTGCTTCNACTGCAAANNTTNNCCTCAAGCTTTCCACAATTTTAATGAAGATGCANCCACNTCGCNNGAANAGG] [+] EMBL AA753192 [NGAGTGATGATGACATGTCGTCGCCGGCGGCCACCGCCTGCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGANCTCTGGCCCGGANGGGCAGCCGCCGGCTCGGGGTGGTGCGCGCGGCCAGCGCGGANGTGGCCGCGCCCGACGCCGCCGCCGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTACTTCAAGGCGGANGGTACCATGGAGGANANGGCCATCCCCAAGATCACCCAGGCCCTCGAGGGGGTGGAGGGGGTGAGCGACCTGNAAGTGCTCATCGANGAAGCATCGGAAGTGTTGTGTTGACAAANGAGACNACGGTGCAANCTACCGGGGTGGGCTCAAACCTGGTTNAAACCATCCANGGAACTTGCTTCNACTGCAAANNTTNNCCTCAAGCTTTCCACAATTTTAATGAAGATGCANCCACNTCGCNNGAANAGG] consensusID : consensus_12717#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [GGGAGGCTTGGGCTTTTCAAGCTGCGCCAACACCTTGAGCCTCAGCTGTGCGACGATGTTTGATATGAGGATCCCCCCCCCTGCCCACGGAGAGGATGGTACGACCCAGCCCCCGAGTGGAGTGGACTGATGTGCATGGTGCCACCGCTGGCTGGATGCCGAGTCTGACTGTGCCATGTGTCGCGGAATGGCATACGATTGTGGCTGCATGGTGTGATTGGGCACTGCTGTCACCTTTGTGTTTAGTTCTGCCCACCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGCTTGAAGTTCTAGCTTATGCCCCCCCAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCCGAGAAATGTTGCGGATTTTTTTGCCAGGTCCCTGATGAATTTGGTTGGAGATCTTTCCAGC] [+] EMBL BI802563 [GGGAGGCTTGGGCTTTTCAAGCTGCGCCAACACCTTGAGCCTCAGCTGTGCGACGATGTTTGATATGAGGATCCCCCCCCCTGCCCACGGAGAGGATGGTACGACCCAGCCCCCGAGTGGAGTGGACTGATGTGCATGGTGCCACCGCTGGCTGGATGCCGAGTCTGACTGTGCCATGTGTCGCGGAATGGCATACGATTGTGGCTGCATGGTGTGATTGGGCACTGCTGTCACCTTTGTGTTTAGTTCTGCCCACCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGCTTGAAGTTCTAGCTTATGCCCCCCCAAGGAGGAAATGGTGTTTTTACTTGTGTATTCTGATTCCGAGAAATGTTGCGGATTTTTTTGCCAGGTCCCTGATGAATTTGGTTGGAGATCTTTCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12717#0 AGCCAGCGAGCGAGCAAAGCAAGATGATGATGACCATGTCGTCGCCGGCGGCCACCGCCT 60 consensus_12717#1 --------------------NGAGTGATGATGAC-ATGTCGTCGCCGGCGGCCACCGCCT 39 consensus_12717#2 --------------------GGGAGGCTTGGGCTTTTCAAGCTGC--GCCAACACCTTGA 38 * * * * * ** ** **** consensus_12717#0 GCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGAGCTC-TG 119 consensus_12717#1 GCCTCCCCGCCTCGCCCTCCCTCGGGCCCCGCTCCCTTCGCCTCCTCCGCGGANCTC-TG 98 consensus_12717#2 GCCTCAGCTGTGCGACGATGTTTGATATGAGGATCCCCCCCCCTGCCCACGGAGAGGATG 98 ***** * ** * * * * ** * ** ** **** ** consensus_12717#0 GCCCGGAGGGGCAGCCGC-CGGCTCGGGGTGGTGCGCGCGG--CCAGCGCGGA--GGTGG 174 consensus_12717#1 GCCCGGANGGGCAGCCGC-CGGCTCGGGGTGGTGCGCGCGG--CCAGCGCGGA--NGTGG 153 consensus_12717#2 GTACGACCCAGCCCCCGAGTGGAGTGGACTGATGTGCATGGTGCCACCGCTGGCTGGATG 158 * ** ** *** ** ** ** ** ** ** *** *** * * * consensus_12717#0 CCGCGCCCGACGCCGCCGC-CGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTAC 233 consensus_12717#1 CCGCGCCCGACGCCGCCGC-CGCCGCTCCGGGCTACACCTCCGACTCCCTCATCCTCTAC 212 consensus_12717#2 CCGAGTCTGACTGTGCCATGTGTCGCGGAATGGCATACGATTG-TGGCTGCATGGTGTGA 217 *** * * *** *** * *** * * ** * * *** * * consensus_12717#0 TTCAAGGCGGAGGGTACCATGGAGGAGAGGGCCATCCCCAAGATCACC--CAGGCCCTCG 291 consensus_12717#1 TTCAAGGCGGANGGTACCATGGAGGANANGGCCATCCCCAAGATCACC--CAGGCCCTCG 270 consensus_12717#2 TTGGGCACTGCTGTCACCTTTGTGTTTAGTTCTGCCCACCACTCCCTCTCCTTGTAATCT 277 ** * * * *** * * * * * ** * * * * * * ** consensus_12717#0 AGGGGGTGGAGGGGGTGAGCGACCTGGAGGTGCTCATCGAGGAAGGCATCGGAAGTGTTG 351 consensus_12717#1 AGGGGGTGGAGGGGGTGAGCGACCTGNAAGTGCTCATCGANGAAG-CATCGGAAGTGTTG 329 consensus_12717#2 CTGAGGAAGTTCGCTTGAAGTTCTAGCTTATGCCCCCCCAAGGAG------GAAATGGTG 331 * ** * * *** * * *** * * * * ** *** ** ** consensus_12717#0 TGTTGACAAAGGAGACGACGGTGCAAGCTACCGGGGTGGCCTCAAACCTGGTAGAAGCCA 411 consensus_12717#1 TGTTGACAAANGAGACNACGGTGCAANCTACCGGGGTGGGCTCAAACCTGGTTNAAACCA 389 consensus_12717#2 TTTTTACTTGTGT-ATTCTGATTCCGAGAAATGTTGCGGATTT---TTTTGCCAGGTCC- 386 * ** ** * * * * * * * * ** * * * ** consensus_12717#0 TCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTT-CGACGATTTTAATGAG 470 consensus_12717#1 TCCANGGAACTTGCTTCNA-CTGCAAANNTTNNCCTCAAGCTTTCCACAATTTTAATGAA 448 consensus_12717#2 -CTGATGAATTTGGTTGGA------GATCTTTCCAGC----------------------- 416 * ** * * ** * * * consensus_12717#0 GATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCA 530 consensus_12717#1 GATGCANCCACN-TCGCNNGAANAGG---------------------------------- 473 consensus_12717#2 ------------------------------------------------------------ consensus_12717#0 TGTCAACAGCTGCTGATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGT 590 consensus_12717#1 ------------------------------------------------------------ consensus_12717#2 ------------------------------------------------------------ consensus_12717#0 TATTGGCACTCTTCAACATTTTGTTTAGTTGCTGCACAGCACTCCCTCTCCTTGTAATCT 650 consensus_12717#1 ------------------------------------------------------------ consensus_12717#2 ------------------------------------------------------------ consensus_12717#0 CTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAAGGAGGAAATGGTGTTTTTAC 710 consensus_12717#1 ------------------------------------------------------------ consensus_12717#2 ------------------------------------------------------------ consensus_12717#0 TTGTGTATTCTGATTCAGAGAAAGTGTTCTGATTTTTTTTCAAGGTCCAAACAAAAAAGG 770 consensus_12717#1 ------------------------------------------------------------ consensus_12717#2 ------------------------------------------------------------ consensus_12717#0 GGAGATGTTTCAGCTAAAAAAAAAAAAAAAAA 802 consensus_12717#1 -------------------------------- consensus_12717#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||