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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1222 fasta sequence
[ACCACCACCCCCCATGGCGGCAGCAAGGATGAAGAACACCACCATGGGTTGC-GCCTTCCTGCTCGCCGCGTTCGCCATGGCC-GCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC-GTCCCACGGTGGCGGC-GC-CTACGGGAGCTCCCCTTCCACGCCTTCTGGCGGCGGCTCCTCCCCGACGCCGTCCCACGGTGGCGGC-GCGTACGGCGGCGGC-GGAGCTCCGGCGACACCGGCGTCGCACGACGGCCACGGC-CTCATCCCCACCACCC-CCGGGACATGC-GACTACTGGAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGAC-GGC-GCC-GGCGAGCTGATGCGGGAGGGC-GC-CGCC-GC-GCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG-AGGGACGCGTTCGCGGCG-GCGGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCCAACGAGGGCGGCCGCGCGTAGACGACGACGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTGTTTAAG-TTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073568 [ACCACCACCCCCCATGGCGGCAGCAAGGATGAAGAACACCACCATGGGTTGC GCCTTCCTGCTCGCCGCGTTCGCCATGGCC GCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC GTCCCACGGTGGCGGC GC CTACGGGAGCTCCCCTTCCACGCCTTCTGGCGGCGGCTCCTCCCCGACGCCGTCCCACGGTGGCGGC GCGTACGGCGGCGGC GGAGCTCCGGCGACACCGGCGTCGCACGACGGCCACGGC CTCATCCCCACCACCC CCGGGACATGC GACTACTGGAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGAC GGC GCC GGCGAGCTGATGCGGGAGGGC GC CGCC GC GCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG AGGGACGCGTTCGCGGCG GCGGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCCAACGAGGGCGGCCGCGCGTAGACGACGACGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTGTTTAAG TTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGA ]
[+] EMBL AU173780 [ GCAGCAAGGATGAAGAACACCACCATGGGTTGCAGCCTTCCTGCTCGCCGAGTTCGCCATGGCCAGCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC GTCCCACGGTGGCGGC GC CTACGGGAG ]
[+] EMBL AU181780 [ GGGTTGC GCCTTCCTGCTCGCCGCGTTCGCCATGGCC GCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCCCGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCCGGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTCCGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTACGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGCGCC GTCCCACGGTGGCGGC GC CTACGGGAGCTCCCCTTCCACGCCTTCTGGCGG ]
[+] EMBL OSC29341 [ GTCAAGAAGCCGGACTNCGTGCCGGCGTTCGACCCGNGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCNACGCCGATCCCGGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGACGTCGNACGG GGCGGNCCCTNCGGGGGCGCNTTGCCTTCCCCGTCCNANGGCGGCGNGGCGACGTCCCACGGAGG ]
[+] EMBL BI811576 [ GGTTAC CCCTCCCCCTGCAGC GCTACGTCGTCTGCTCCCCGGCACCAGTCCCACGGTGCAGGCAGCACTACGGGAGCTCCCCTGCCACGCCTTCTGGCAGCGGCTCCTCCCCGACGCCGTCCCACGGTGGCGGCAGCGTACGGCGGCGGCAGGAGCTCCGGCGACACCGGCGTCGCACGACGGCCACGGCACTCATCCCCACCACCCACCGGGACATGCAGACTACTGGA GTCGCATCCGATGGAGATGTGGTCGGCGCT GGGCGGT GCCGAGCTCGGTGGCCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGACAGGCAGCCAGGCGAGCTGATGCGGGAGGGCAGCACGCCAGCAGCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG AGGGACGCGTTCGCGGC GCGGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCC ]
[+] EMBL AU173781 [ TCCCCACCACCC CCGGGACATGC GACTACTGGAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAACACCCGCGGCGAC GGC GCC GGCGAGCTGATGCGGGAGGGC GC CGCC GC GCTGCTCAACTCGATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTG AGGGACGCGTTCGCGGCG GCGGCGGGGGGAGGCTCCGACGGCTCCTCCTCGGCGCAGGCGGCGGCGTTCAAGA ]
[+] EMBL C27718 [ GAGGTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTTCTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCANCACCCGCGGCGAC GGC GCC GGCGAGCTTATGCGGGAGGGCTGC CGCC GC GCTGCTTAANTCGATNANCCGGTTCGGCTTTCCCTACANGGCCGANCAAGTGAAGGGACGCGTTCGNGGCGNGCGGCGGG ]
[+] EMBL CF316273 [ AACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTATGTGTGGTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTGTTTAAGTTTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97814 [ TCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTNAAAAGTACGTGTGTTAAANTAGTTGTGTGGTTGANTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCGTGTNAAAACATGTGTAATCACTCNCGTGTTTAAN TTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAA ]
consensusID : consensus_12729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 312 fasta sequence
[GGGAATACTTGGGCCTGGCGTAGACGACGACGACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAA-TGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTTTAAGTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATATTTCTT]
[+] EMBL CB964776 [GGGAATACTTGGGCCTGGCGTAGACGACGACGACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAA TGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTTTAAGTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATA ]
[+] EMBL CB965892 [ ACGACGACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGCATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGTTGTGTGGTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCGTGTAAAATCATGTGTAATCACTCTCGTTTAAGTTTTTTTTTTTTGCTGTTTCAAATTCGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATATTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12729#0 ACCACCACCCCCCATGGCGGCAGCAAGGATGAAGAACACCACCATGGGTTGCGCCTTCCT 60
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GCTCGCCGCGTTCGCCATGGCCGCCGCCTTCGTCCCCGTGGCCGAGTCCAGGACCACCCC 120
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 CGTGGAGAAGACGACCACCACCCAAGCAGAGGATGGTGTCAAGAAGCCGGACTGCGTGCC 180
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GGCGTTCGACCCGCGCTCGTTCCCCGGCCACGGCGGCACCACGACTCCGACGCCGATCCC 240
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GGGCCACCACGGCGGCGGCGGCTCATCCGGGACCACGCCGTCGCACGGCGGCGGCCCCTC 300
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 CGGGGGCGCGTTGCCTTCCCCGTCCCACGGCGGCGCGGCGCCGTCCCACGGAGGAGGGTA 360
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 CGGGGCTTCCCCGCCGGTGACGCCCTCCCCTGGCGGCGGCTACGGCGGCGGCTCCCCGGC 420
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GCCGTCCCACGGTGGCGGCGCCTACGGGAGCTCCCCTTCCACGCCTTCTGGCGGCGGCTC 480
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 CTCCCCGACGCCGTCCCACGGTGGCGGCGCGTACGGCGGCGGCGGAGCTCCGGCGACACC 540
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GGCGTCGCACGACGGCCACGGCCTCATCCCCACCACCCCCGGGACATGCGACTACTGGAG 600
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GTCGCATCCGATGGAGATGTGGTCGGCGCTGGGGCGGTGGCCGAGCTCGGTGGGCCACTT 660
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 CTTCGGCTCCGGCTCCGGCGGCGCTGGAACGGGGATGAGCATCCAGGACGCGCTGGCCAA 720
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 CACCCGCGGCGACGGCGCCGGCGAGCTGATGCGGGAGGGCGCCGCCGCGCTGCTCAACTC 780
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GATGACCCGCTCCGGCTTCCCCTACACGGCCGAGCAGGTGAGGGACGCGTTCGCGGCGGC 840
consensus_12729#1 ------------------------------------------------------------
consensus_12729#0 GGCGGGGGGAGGCTCCGACGGCGCCGCCGCGGCGCAGGCGGCGGCGTTCAAGAAGGCCAA 900
consensus_12729#1 ------------------------------------------GGGAATACTTGGGCCTGG 18
** * * *
consensus_12729#0 CGAGGGCGGCCGCGCGTAGACGACGACGACGACGTACGCAACGTACGCATCCGTGCATGC 960
consensus_12729#1 CGTAGACGACGACG-----ACGACGTCGACGACGTACGCAACGTACGCATCCGTGCATGC 73
** * ** * ** ****** **********************************
consensus_12729#0 ATGCATGGCTTAATTGTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGT 1020
consensus_12729#1 ATGCATGGCTTAAT-GTTTAATTAGGCGGGAAAATTAAAAAGTACGTGTGTTAAATTAGT 132
************** *********************************************
consensus_12729#0 TGTGTGGTTGATTTGATGGTGATGGTCTGGTTGTGTACGTGTGGTTGGTGTGTTTATGCG 1080
consensus_12729#1 TGTGTGGT-GATTTGATGGTGATGGTCTGGTTGTGTACGTGTGTTTGGTGTGTTTATGCG 191
******** ********************************** ****************
consensus_12729#0 TGTAAAATCATGTGTAATCACTCTCGTGTTTAAGTTTTTTTTTTTTTGCTGTTTCAAATT 1140
consensus_12729#1 TGTAAAATCATGTGTAATCACTCTCGT--TTAAGTTTTTTTTTTTT-GCTGTTTCAAATT 248
*************************** ***************** *************
consensus_12729#0 CGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTAAAAAAAAAAAAAAAAAAAAAAAA 1200
consensus_12729#1 CGATCGGTGGCAAATGAAGGAAGTGAGCTTATCCTTACATGGTTACTGCTGGTGAATATT 308
************************************* * * ** *
consensus_12729#0 AAAAAAAAAAAAAAAAAAAAAA 1222
consensus_12729#1 TCTT------------------ 312
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||