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Oryza sativa
cluster # 12732 cluster # 12732       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12732#0 length = 754 sequences # 8  
consensus_12732#1 length = 507 sequences # 2  
consensus_12732#2 length = 200 sequences # 1  

consensusID : consensus_12732#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 754
fasta sequence
                              [TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC-GGGCTCGGGGCGCGGGC-GGC-GTGCTCGGGTGTGGGCGATAGC-GCTCGGGTGC-GGGCGACGGAGGAGAGTGC-GGCGGCGAGCTCGGGGCGC-GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA]

[+] EMBL CA754251             [TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGACTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCTCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGATCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGTGAGCAACGTCATCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGCTAGTGGAAACGGTGATGGAGCAGGGGACTTTCAGGACGACGACCCCGGCGACAGAGGTTACCGGTATTTGTGATGCTTGTAATATTTGg                                                                                                                                         ]
[+] EMBL AK107705             [                          ACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAAT                                 ]
[-] EMBL CB678998             [                                TCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGAAGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGG                                                                                                             ]
[+] EMBL AU183856             [                                      AGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGCAGGGCTCGGGGCGCGGGCAGGCAGTGCTCGGGTGTGGGCGATAGCAGCTCGGGTGCAGGGCGACGGAGGAGAGTGCAGGCGGCGAGCTCGGGGCGCAGGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCNAGGCGGANGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCG                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB678997             [                                        ATCCACCGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTG                                                                                                                    ]
[+] EMBL AU085936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAA                     ]
[+] EMBL AU075715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACA CGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA]
[+] EMBL AU058284             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAnn                  ]


>consensus_12732#0 TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCG CGGGCGATCGGAGGAGAGGGTGGTGGCGGGCTCGGGGCGCGGGCGGCGTGCTCGGGTGTG GGCGATAGCGCTCGGGTGCGGGCGACGGAGGAGAGTGCGGCGGCGAGCTCGGGGCGCGGG TGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGT GAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCG GATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCG GATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGC GGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTC GGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGG TGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTG ATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGT TCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAA TTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA



consensusID : consensus_12732#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence
                              [GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAAAAAAAAAAAAAA]

[+] EMBL BI809160             [GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAA            ]
[+] EMBL AU094173             [                                                                                                                                                                                                                                                                                                                                                             AAGGACGACGACGCCGGCGACA NGGTTCTCTGTATTTNTAATGCTTGTAATATTTGTAATGATATTTGTNAAGCATTGTATTTGGATTNATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTAATGCTTGAAAAAAAAAAAAAAAAA]


>consensus_12732#1 GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGT GCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCT CACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCG TGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGT CGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTG AGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGA CGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTG AAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTT TTGATGCTTGAAAAAAAAAAAAAAAAA



consensusID : consensus_12732#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence
                              [CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGACGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTAGCTTGTATGTATGTAGTTCG]

[+] EMBL AA750987             [CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGACGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTAGCTTGTATGTATGTAGTTCG]


>consensus_12732#2 CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGG AGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGA CGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTA GCTTGTATGTATGTAGTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12732#1      ------------------------------------------------------------
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCG 60
                                                                                   

consensus_12732#1      ------------------------------------------------------------
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      CGGGCGATCGGAGGAGAGGGTGGTGGCGGGCTCGGGGCGCGGGCGGCGTGCTCGGGTGTG 120
                                                                                   

consensus_12732#1      ------------------------------------------------------------
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      GGCGATAGCGCTCGGGTGCGGGCGACGGAGGAGAGTGCGGCGGCGAGCTCGGGGCGCGGG 180
                                                                                   

consensus_12732#1      -----------------------------GCGGCGGATCCGGCGACGGGAGGCGCGAGGT 31
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      TGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGT 240
                                                                                   

consensus_12732#1      GCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGC 91
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      GAGG-TCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGC 299
                                                                                   

consensus_12732#1      GGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCC 151
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      GGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGC 359
                                                                                   

consensus_12732#1      CCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCA-CGGTGGTGGCGAGC--GGAG 208
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      GGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGG 419
                                                                                   

consensus_12732#1      CGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCT 268
consensus_12732#2      -----------------------CGACAGAGACGACGTGACGAGGTGCGAC-CGGGGACT 36
consensus_12732#0      CGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCT 479
                                              *  *** * ** ** * **  *   * * * *** **

consensus_12732#1      CGGCAGCAGCGTCGTCGA-GGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCAC 327
consensus_12732#2      CGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCG-TAGTGGCAAC 95
consensus_12732#0      CGGCAGCAGCGTCGTCGA-GGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAAC 538
                       **  ************** ****************************** ******* **

consensus_12732#1      GGTGATGGTGCACGGGGACTTCAAGGACGACGAC-GCCGGCGACAGCGGTTCTCTGTATT 386
consensus_12732#2      G-TGATGGTGCA-GGGGACTTCAAGGACGACGACTGCCGGC-ACAGC--TTCTCTG-ATT 149
consensus_12732#0      GGTGATGGTGCA-GGGGACTTCAAGGACGACGAC-GCCGGCGACAGCGGTTCTCTGTATT 596
                       * ********** ********************* ****** *****  ******* ***

consensus_12732#1      TGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTG 446
consensus_12732#2      TGTGATGTCTGTA-TATATGTGATG-TATATTAGCTTGTATGTATGTAGTTCG------- 200
consensus_12732#0      TGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTG 656
                       *******  **** *** ******* *** *  *      ***** * * * *       

consensus_12732#1      GTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAAAAAAAAAAAAA 506
consensus_12732#2      ------------------------------------------------------------
consensus_12732#0      GTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATG 716
                                                                                   

consensus_12732#1      A------------------------------------- 507
consensus_12732#2      --------------------------------------
consensus_12732#0      GAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA 754
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)