These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 754 fasta sequence [TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC-GGGCTCGGGGCGCGGGC-GGC-GTGCTCGGGTGTGGGCGATAGC-GCTCGGGTGC-GGGCGACGGAGGAGAGTGC-GGCGGCGAGCTCGGGGCGC-GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA] [+] EMBL CA754251 [TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGACTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCTCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGATCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGTGAGCAACGTCATCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGCTAGTGGAAACGGTGATGGAGCAGGGGACTTTCAGGACGACGACCCCGGCGACAGAGGTTACCGGTATTTGTGATGCTTGTAATATTTGg ] [+] EMBL AK107705 [ ACCTCCTCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAAT ] [-] EMBL CB678998 [ TCCCTCAGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGAAGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGG ] [+] EMBL AU183856 [ AGATCCACAGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGCAGGGCTCGGGGCGCGGGCAGGCAGTGCTCGGGTGTGGGCGATAGCAGCTCGGGTGCAGGGCGACGGAGGAGAGTGCAGGCGGCGAGCTCGGGGCGCAGGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCNAGGCGGANGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCG ] [+] EMBL CB678997 [ ATCCACCGGCGGCAGCACCGCGGGCGATCGGAGGAGAGGGTGGTGGC GGGCTCGGGGCGCGGGC GGC GTGCTCGGGTGTGGGCGATAGC GCTCGGGTGC GGGCGACGGAGGAGAGTGC GGCGGCGAGCTCGGGGCGC GGGTGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGTGAGGTCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGCGGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGCGGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTG ] [+] EMBL AU085936 [ GCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAA ] [+] EMBL AU075715 [ CAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAACGGTGATGGTGCAGGGGACTTCAAGGACGACGACGCCGGCGACA CGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA] [+] EMBL AU058284 [ TGCAGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATGGAAATTTTTAGCTGTAAAnn ] consensusID : consensus_12732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAAAAAAAAAAAAAA] [+] EMBL BI809160 [GCGGCGGATCCGGCGACGGGAGGCGCGAGGTGCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCCCCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCACGGTGGTGGCGAGCGGAGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCTCGGCAGCAGCGTCGTCGAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCACGGTGATGGTGCACGGGGACTTCAAGGACGACGACGCCGGCGACAGCGGTTCTCTGTATTTGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTGGTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAA ] [+] EMBL AU094173 [ AAGGACGACGACGCCGGCGACA NGGTTCTCTGTATTTNTAATGCTTGTAATATTTGTAATGATATTTGTNAAGCATTGTATTTGGATTNATGCTTGGTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTAATGCTTGAAAAAAAAAAAAAAAAA] consensusID : consensus_12732#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGACGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTAGCTTGTATGTATGTAGTTCG] [+] EMBL AA750987 [CGACAGAGACGACGTGACGAGGTGCGACCGGGGACTCGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCGTAGTGGCAACGTGATGGTGCAGGGGACTTCAAGGACGACGACTGCCGGCACAGCTTCTCTGATTTGTGATGTCTGTATATATGTGATGTATATTAGCTTGTATGTATGTAGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12732#1 ------------------------------------------------------------ consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 TCCTTCCTAGTCCCTCCAGATCCAACACCTCCTCCCTCAGATCCACAGGCGGCAGCACCG 60 consensus_12732#1 ------------------------------------------------------------ consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 CGGGCGATCGGAGGAGAGGGTGGTGGCGGGCTCGGGGCGCGGGCGGCGTGCTCGGGTGTG 120 consensus_12732#1 ------------------------------------------------------------ consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 GGCGATAGCGCTCGGGTGCGGGCGACGGAGGAGAGTGCGGCGGCGAGCTCGGGGCGCGGG 180 consensus_12732#1 -----------------------------GCGGCGGATCCGGCGACGGGAGGCGCGAGGT 31 consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 TGGTGAGGTCAGGCGTGGGCGGCGGCGCTCGGGCACGGGTGACGGAGGAGAGGACGGCGT 240 consensus_12732#1 GCGGATCCGGCGATGGGGAGGTGCGAGGTGCGGATCCGCGACGGGAAGGCGCAAGGCGGC 91 consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 GAGG-TCAGGCGTAGGCGGCCCGGGCGGCGGCGCTCGGCGACAGGGAGGCGCGAGGCGGC 299 consensus_12732#1 GGATCCACAGGTCTCTCTCCCCCACTCCTCACTCCTCCTCTTCCCCCGCCGCCACCACCC 151 consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 GGATCCGGCGACGGGGAGGCGCGAGGTGGCGGATCCGGCGATGGGGAGGTGCGAGGTGGC 359 consensus_12732#1 CCTCTCCCTCTCTCAAATCTAGCGTTGCGTGGCTTTGCA-CGGTGGTGGCGAGC--GGAG 208 consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 GGATCCGGCGACGGGAAGGCGCAAGGCGGCGGATCCACAGCGGTGGTGGCGAGGCGGAGG 419 consensus_12732#1 CGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCT 268 consensus_12732#2 -----------------------CGACAGAGACGACGTGACGAGGTGCGAC-CGGGGACT 36 consensus_12732#0 CGGTGGAGGTCGCCGGGGCTCGGCAGCAGGGTCGTCGAGGCGGTGGAGGTCGCCGGGGCT 479 * *** * ** ** * ** * * * * *** ** consensus_12732#1 CGGCAGCAGCGTCGTCGA-GGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCCAC 327 consensus_12732#2 CGCGAGCAGCGTCGTCGAAGGCGGAGGCGGTTGAGGCCGACGGGGCTCG-TAGTGGCAAC 95 consensus_12732#0 CGGCAGCAGCGTCGTCGA-GGCGGAGGCGGTTGAGGCCGACGGGGCTCGGTAGTGGCAAC 538 ** ************** ****************************** ******* ** consensus_12732#1 GGTGATGGTGCACGGGGACTTCAAGGACGACGAC-GCCGGCGACAGCGGTTCTCTGTATT 386 consensus_12732#2 G-TGATGGTGCA-GGGGACTTCAAGGACGACGACTGCCGGC-ACAGC--TTCTCTG-ATT 149 consensus_12732#0 GGTGATGGTGCA-GGGGACTTCAAGGACGACGAC-GCCGGCGACAGCGGTTCTCTGTATT 596 * ********** ********************* ****** ***** ******* *** consensus_12732#1 TGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCCTTGTATTTGGATTGATGCTTG 446 consensus_12732#2 TGTGATGTCTGTA-TATATGTGATG-TATATTAGCTTGTATGTATGTAGTTCG------- 200 consensus_12732#0 TGTGATGCTTGTAATATTTGTGATGATATTTGTGAAGCATTGTATTTGGATTGATGCTTG 656 ******* **** *** ******* *** * * ***** * * * * consensus_12732#1 GTGTTCCAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAAAAAAAAAAAAAAAA 506 consensus_12732#2 ------------------------------------------------------------ consensus_12732#0 GTGTTCAAATTTTTTGTTAAATGTGTGGATATTTTTGATGCTTGAATGCTTGGGAGAATG 716 consensus_12732#1 A------------------------------------- 507 consensus_12732#2 -------------------------------------- consensus_12732#0 GAAATTTTTAGCTGTAAAAAAAAAAAAAAAGNGGAAAA 754 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||