These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2843 fasta sequence [GGTGGTGGAGAGGCTAAAAAACCAGAGATAAAATGAGAGCAACGCCATGTGCTTCACCCTCTTCCTTCTTCTATCTCGCTCGCCTTCCCTTCGCTGAAGCATCCGTCCATCTGTTCGCTTTGTCCTCTTGCAATCATTCACTCTCCTTGCTCGATTCTATAAACACGCAGTGAGGCTCCGATCCGCCATCGGCTCACCGCCATTGCTGAGGAACACAGCTTTCTCTTTTTTTTCCCACGATGTGGCGCCATGGCGAGAGATGTGTGATCCTTGCTGTCGCCGCCGTGGCTCTTGTCGCGGCGGCGACGGCAACGGCGGCGGCGGCCGTTGGGGGTGAGAGGAGGACGTACATCGTGCACATGTCGCGGTCGGCGAAGCCGAACGA-TTTCGTGGAGCACGGCGAGTGGTACGCGGCGTCGCTGCAGTCGGTGTCCGACGCGGCCACCGTGCTGTACACCTACGACACCATCGTCCATGGCTACTCGGCGCGGCTGACGCGCGCGGAGGCCGAGGCGCTGGAGTCGCAGCCCGGGGTGCTCCTCGTCAACCCGGAGGTGCGGTACGAGCTGCACACGACGCGGACGCCGGAGTTCCTGGGGCTGGACCGCACGGACGCGCTGTTCCCGCAGTCGAACACCGGCAGCGACGTCATCGTCGGGGTGCTCGATACCGGCGTGTGGCCGGAGAGGCCGAGCTACGACGACGCCGGGCTCGGCCCCGTGCCGGCGGGATGGAAGGGGAAGTGCGAGGAAGGCAACGACTTCAACGCCTCCGCCTGCAACAAGAAGCTCATCGGCGCGAGGTTCTTCTTGACCGGGTACGAGGCGGCGAAGGGCCCCGTCGACACGTCCAAGGAGTCGCGGTCGCCGAGGGACAACGACGGGCACGGCACGCACACCTCCAGCACGGCGGCGGGATCCGCCGTGCGCGGCGCCGACCTGCTCGGGTACGCCGCCGGGACGGCCAAGGGCATGGCGCCGCACGCGCGCGTCGCGACGTACAAGGTTTGCTGGGTCGGCGGGTGCTTCAGCTCCGACATCCTCAAGGCCATGGAGGTGGCGGTGAACGACGGCGTGGACGTGCTCTCGCTCTCGCTCGGCGGCGGCACCGCGGACTACTACCGCGACAGCATCGCTGTGGGCGCTTACAGCGCCATGGAAAGGGGGATCTTCGTGTCCTGCTCGGCGGGGAACGCCGGGCCAGGCTCGGCCACGCTGTCGAACGGCGCGCCATGGATCACCACCGTCGGGGCCGGGACACTCGACCGCGACTTCCCCGCCCACGTCGTCCTCGGCAACGGCAAGAACTACTCCGGCGTCTCCCTTTACAGCGGCAAACAGCTGCCCACCACGCCGGTCCCATTCATCTATGCCGGGAACGCGTCGAACAGCAGCATGGGCGCGCTCTGCATGTCCGGCAGCCTAATCCCGGAGAAGGTCGCCGGCAAGATCGTCCTCTGCGACCGTGGCACCAATGCCAGGGTCCAGAAGGGCTTCGTCGTCAAGGACGCCGGTGGCGCCGGCATGGTGCTCGCGAACACCGCCGCGAACGGCGAGGAGCTCGTCGCTGACGCGCACGTCCTCCCGGGCGCCGGTGTCGGGCAGAAGGCCGGCGACACCATGAGAGCGTACGCATTGTCCGATCCGAACCCGACGGCCTCCATAGTGTTCGCCGGAACACAGGTTGGCATCCAGCCATCTCCCGTCGTGGCCGCGTTCTCGTCCAGGGGGCCGAACACCGTGACGCCCGGCATCCTCAAGCCGGACCTGATCGCGCCCGGCGTCAACATCCTCGCGGCGTGGTCCGGATCCGTCGGCCCCTCGGGGCTCGCCGGCGACAGCCGCCGCGTCGGATTCAACATCATCTCCGGGACGTCCATGTCGTGCCCGCACGTGAGCGGGCTGGCGGCGTTGCTCCGCGCGGCGCACCAGGACTGGAGCCCGGCGGCGATCCGCTCGGCGCTGATGACCACGTCGTACAACGGCTACCCCAACGGCAACGGCATCCTCGACGTGGCCACCGGCCTCC-CGGCGACGCCGCTCGACGTCGGCGCCGGCCACGTCGACCCCAGCAAGGCGGTGGATCCGGGCCTCGTCTACGACATCGCCGCCGCCGACTACGTCGACTTCCTCTGCGCCATCAGCTACGGGCCGATGCAGATCGCCGCGCTCACCAAGCACACGACGGACGCCTGCAGCGGCAACCGCACGTACGCGGTGACCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGCACACCCGCACGGTGACCAACGTCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGTCCGGCGAGAAGCAGAGCTACACGGTGAGCTTCGCGGCGGCCGCGATGCCGTCCGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAGCAAGTGGTTGCTCGTAGTAGTACAGATCAATCTCAGGTGATTTATATCTGCATT] [+] EMBL AK103255 [GGTGGTGGAGAGGCTAAAAAACCAGAGATAAAATGAGAGCAACGCCATGTGCTTCACCCTCTTCCTTCTTCTATCTCGCTCGCCTTCCCTTCGCTGAAGCATCCGTCCATCTGTTCGCTTTGTCCTCTTGCAATCATTCACTCTCCTTGCTCGATTCTATAAACACGCAGTGAGGCTCCGATCCGCCATCGGCTCACCGCCATTGCTGAGGAACACAGCTTTCTCTTTTTTTTCCCACGATGTGGCGCCATGGCGAGAGATGTGTGATCCTTGCTGTCGCCGCCGTGGCTCTTGTCGCGGCGGCGACGGCAACGGCGGCGGCGGCCGTTGGGGGTGAGAGGAGGACGTACATCGTGCACATGTCGCGGTCGGCGAAGCCGAACGA TTTCGTGGAGCACGGCGAGTGGTACGCGGCGTCGCTGCAGTCGGTGTCCGACGCGGCCACCGTGCTGTACACCTACGACACCATCGTCCATGGCTACTCGGCGCGGCTGACGCGCGCGGAGGCCGAGGCGCTGGAGTCGCAGCCCGGGGTGCTCCTCGTCAACCCGGAGGTGCGGTACGAGCTGCACACGACGCGGACGCCGGAGTTCCTGGGGCTGGACCGCACGGACGCGCTGTTCCCGCAGTCGAACACCGGCAGCGACGTCATCGTCGGGGTGCTCGATACCGGCGTGTGGCCGGAGAGGCCGAGCTACGACGACGCCGGGCTCGGCCCCGTGCCGGCGGGATGGAAGGGGAAGTGCGAGGAAGGCAACGACTTCAACGCCTCCGCCTGCAACAAGAAGCTCATCGGCGCGAGGTTCTTCTTGACCGGGTACGAGGCGGCGAAGGGCCCCGTCGACACGTCCAAGGAGTCGCGGTCGCCGAGGGACAACGACGGGCACGGCACGCACACCTCCAGCACGGCGGCGGGATCCGCCGTGCGCGGCGCCGACCTGCTCGGGTACGCCGCCGGGACGGCCAAGGGCATGGCGCCGCACGCGCGCGTCGCGACGTACAAGGTTTGCTGGGTCGGCGGGTGCTTCAGCTCCGACATCCTCAAGGCCATGGAGGTGGCGGTGAACGACGGCGTGGACGTGCTCTCGCTCTCGCTCGGCGGCGGCACCGCGGACTACTACCGCGACAGCATCGCTGTGGGCGCTTACAGCGCCATGGAAAGGGGGATCTTCGTGTCCTGCTCGGCGGGGAACGCCGGGCCAGGCTCGGCCACGCTGTCGAACGGCGCGCCATGGATCACCACCGTCGGGGCCGGGACACTCGACCGCGACTTCCCCGCCCACGTCGTCCTCGGCAACGGCAAGAACTACTCCGGCGTCTCCCTTTACAGCGGCAAACAGCTGCCCACCACGCCGGTCCCATTCATCTATGCCGGGAACGCGTCGAACAGCAGCATGGGCGCGCTCTGCATGTCCGGCAGCCTAATCCCGGAGAAGGTCGCCGGCAAGATCGTCCTCTGCGACCGTGGCACCAATGCCAGGGTCCAGAAGGGCTTCGTCGTCAAGGACGCCGGTGGCGCCGGCATGGTGCTCGCGAACACCGCCGCGAACGGCGAGGAGCTCGTCGCTGACGCGCACGTCCTCCCGGGCGCCGGTGTCGGGCAGAAGGCCGGCGACACCATGAGAGCGTACGCATTGTCCGATCCGAACCCGACGGCCTCCATAGTGTTCGCCGGAACACAGGTTGGCATCCAGCCATCTCCCGTCGTGGCCGCGTTCTCGTCCAGGGGGCCGAACACCGTGACGCCCGGCATCCTCAAGCCGGACCTGATCGCGCCCGGCGTCAACATCCTCGCGGCGTGGTCCGGATCCGTCGGCCCCTCGGGGCTCGCCGGCGACAGCCGCCGCGTCGGATTCAACATCATCTCCGGGACGTCCATGTCGTGCCCGCACGTGAGCGGGCTGGCGGCGTTGCTCCGCGCGGCGCACCAGGACTGGAGCCCGGCGGCGATCCGCTCGGCGCTGATGACCACGTCGTACAACGGCTACCCCAACGGCAACGGCATCCTCGACGTGGCCACCGGCCTCC CGGCGACGCCGCTCGACGTCGGCGCCGGCCACGTCGACCCCAGCAAGGCGGTGGATCCGGGCCTCGTCTACGACATCGCCGCCGCCGACTACGTCGACTTCCTCTGCGCCATCAGCTACGGGCCGATGCAGATCGCCGCGCTCACCAAGCACACGACGGACGCCTGCAGCGGCAACCGCACGTACGCGGTGACCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGCACACCCGCACGGTGACCAACGTCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGTCCGGCGAGAAGCAGAGCTACACGGTGAGCTTCGCGGCGGCCGCGATGCCGTCCGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAGCAAGT ] [+] EMBL AK101646 [ ACCGCCATTGCTGAGGAACACAGCTTTCTCTTTTTTTTCCCACGATGTGGCGCCATGGCGAGAGATGTGTGATCCTTGCTGTCGCCGCCGTGGCTCTTGTCGCGGCGGCGACGGCAACGGCGGCGGCGGCCGTTGGGGGTGAGAGGAGGACGTACATCGTGCACATGTCGCGGTCGGCGAAGCCGAACGA TTTCGTGGAGCACGGCGAGTGGTACGCGGCGTCGCTGCAGTCGGTGTCCGACGCGGCCACCGTGCTGTACACCTACGACACCATCGTCCATGGCTACTCGGCGCGGCTGACGCGCGCGGAGGCCGAGGCGCTGGAGTCGCAGCCCGGGGTGCTCCTCGTCAACCCGGAGGTGCGGTACGAGCTGCACACGACGCGGACGCCGGAGTTCCTGGGGCTGGACCGCACGGACGCGCTGTTCCCGCAGTCGAACACCGGCAGCGACGTCATCGTCGGGGTGCTCGATACCGGCGTGTGGCCGGAGAGGCCGAGCTACGACGACGCCGGGCTCGGCCCCGTGCCGGCGGGATGGAAGGGGAAGTGCGAGGAAGGCAACGACTTCAACGCCTCCGCCTGCAACAAGAAGCTCATCGGCGCGAGGTTCTTCTTGACCGGGTACGAGGCGGCGAAGGGCCCCGTCGACACGTCCAAGGAGTCGCGGTCGCCGAGGGACAACGACGGGCACGGCACGCACACCTCCAGCACGGCGGCGGGATCCGCCGTGCGCGGCGCCGACCTGCTCGGGTACGCCGCCGGGACGGCCAAGGGCATGGCGCCGCACGCGCGCGTCGCGACGTACAAGGTTTGCTGGGTCGGCGGGTGCTTCAGCTCCGACATCCTCAAGGCCATGGAGGTGGCGGTGAACGACGGCGTGGACGTGCTCTCGCTCTCGCTCGGCGGCGGCACCGCGGACTACTACCGCGACAGCATCGCTGTGGGCGCTTACAGCGCCATGGAAAGGGGGATCTTCGTGTCCTGCTCGGCGGGGAACGCCGGGCCAGGCTCGGCCACGCTGTCGAACGGCGCGCCATGGATCACCACCGTCGGGGCCGGGACACTCGACCGCGACTTCCCCGCCCACGTCGTCCTCGGCAACGGCAAGAACTACTCCGGCGTCTCCCTTTACAGCGGCAAACAGCTGCCCACCACGCCGGTCCCATTCATCTATGCCGGGAACGCGTCGAACAGCAGCATGGGCGCGCTCTGCATGTCCGGCAGCCTAATCCCGGAGAAGGTCGCCGGCAAGATCGTCCTCTGCGACCGTGGCACCAATGCCAGGGTCCAGAAGGGCTTCGTCGTCAAGGACGCCGGTGGCGCCGGCATGGTGCTCGCGAACACCGCCGCGAACGGCGAGGAGCTCGTCGCTGACGCGCACGTCCTCCCGGGCGCCGGTGTCGGGCAGAAGGCCGGCGACACCATGAGAGCGTACGCATTGTCCGATCCGAACCCGACGGCCTCCATAGTGTTCGCCGGAACACAGGTTGGCATCCAGCCATCTCCCGTCGTGGCCGCGTTCTCGTCCAGGGGGCCGAACACCGTGACGCCCGGCATCCTCAAGCCGGACCTGATCGCGCCCGGCGTCAACATCCTCGCGGCGTGGTCCGGATCCGTCGGCCCCTCGGGGCTCGCCGGCGACAGCCGCCGCGTCGGATTCAACATCATCTCCGGGACGTCCATGTCGTGCCCGCACGTGAGCGGGCTGGCGGCGTTGCTCCGCGCGGCGCACCAGGACTGGAGCCCGGCGGCGATCCGCTCGGCGCTGATGACCACGTCGTACAACGGCTACCCCAACGGCAACGGCATCCTCGACGTGGCCACCGGCCTCC CGGCGACGCCGCTCGACGTCGGCGCCGGCCACGTCGACCCCAGCAAGGCGGTGGATCCGGGCCTCGTCTACGACATCGCCGCCGCCGACTACGTCGACTTCCTCTGCGCCATCAGCTACGGGCCGATGCAGATCGCCGCGCTCACCAAGCACACGACGGACGCCTGCAGCGGCAACCGCACGTACGCGGTGACCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGCACACCCGCACGGTGACCAACGTCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGTCCGGCGAGAAGCAGAGCTACACGGTGAGCTTCGCGGCGGCCGCGATGCCGTCCGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAGCAAGTGGTTGCTCGTAGTAGTACAGATCAATCTCAGGTGATTTATATCTGCATT] [+] EMBL AU076140 [ CTCTTTTTTTTCCCACGATGTGGCGCCATGGCGAGAGATGTGTGATCCTTGCTGTCGCCGCCGTGGCTCTTGTCGCGGCGGCG CGGCAACGGCGGCGGCGGCCGTTGGGGGTGAGAGGAGGACGTACATCGTGCACATNTCGCGGTCGGCGAA NNANCGATTTTCGTGGAGCACGGCGAGTGGTACGCGGCGTCGNTG ] [+] EMBL C72051 [ GACCGCACGGACGCGCTGTTCCCGCAGTCGAACACCGGCAGCNACGTCATCGTCGGGGTGCTCGATACCGGCGTGTGGCCGGAGAGGCCGAGCTACGACGACGCCGGGCTCGGCCCCGTGCCGGCGGNATGGAAGGGGAAGTGCGAGGAAGGCAACGACTTCAACGCCTCCGCCTGCAACAAGAAGCTCATCGGCGCGAGGTTCTTNTTGACCGGNTACGAGGCGGCGAAGGGCCCCGTCGACACGTCCAAGGAGTCGCGGTCGCCGAGGGACAACGACGGGCACGGCACGCACACCTTCAGCACGGCGGCGGGATCCG CGTGCGCGGCGCCGACCTTCTCGGTTACGCNGNCGGGACGGCCA ] [+] EMBL BP185080 [ acgaggGCGCGGCGCACCAGGACTGGAGCCCGGCGGCGATCCGCTCGGCGCTGATGACCACGTCGTACAACGGCTACCCCAACGGCAACGGCATCCTCGACGTGGCCACCGGCCTCC CGGCGACGCCGCTCGACGTCGGCGCCGGCCACGTCGACCCCAGCAAGGCGGTGGATCCGGGCCTCGTCTACGACATCGCCGCCGCCGACTACGTCGACTTCCTCTGCGCCATCAGCTACGGGCCGATGCAGATCGCCGCGCTCACCAAGCACACGACGGACGCCTGCAGCGGCAACCGCACGTACGCGGTGACCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGCACACCCGCACGGTGACCAACGTCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGTCCGGCG ] [+] EMBL BI795504 [ CGACGT GCCACCGGCCTCCACGGCGACGCCGCTCGACGTCGGCGCCGGCCACGTCGACCCCAGCAAGGCGGTGGATCCGGGCCTCGTCTACGACATCGCCGCCGCCGACTACGTCGACTTCCTCTGCGCCATCAGCTACGGGCCGATGCAGATCGCCGCGCTCACCAAGCACACGACGGACGCCTGCAGCGGCAACCGCACGTACGCGGTGACCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGCACACCCGCACGGTGACCAACGTCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGTCCGGCGAGAAGCAGAGCTACACGGT ] [+] EMBL AU029763 [ AACCGCACGTACGCGGTGACCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGCACACCCGCACGGTGACCAACGTCGGCCAGCCCGGNACATACAAGGTNACAGCCAGCGCCGCCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGTCCGGCGAGAAGCAGAGCTACACGGT ] consensusID : consensus_12735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [TTTTGNATTTCGGGACGGGNAGGGANNAACCGCACGNACCAANTGCCANCCGGAAAAAAAGGGACACCAGCCCNCNGCAGCAAAANCNGTCACGGTTTCCNTNGCCCNTGGACGNGAANTTCACNAANTCNGGCGAGAAGCAGAGAAACACGNTGAGTTNGCGGCGCCGGGGATNCCNTCCGGNANGAACGGTTCGNCCCCTTNNTNTGTTCCAGNGACCACAANNTGNTTTCCAGCCCNNTCCCCGNAACATGNACCTGNCGNTNNTNGCGTTNANAGNTANATTTTNNGGANNATCCATCAATGGCGGGCGCAAGAGATTNTCCGGGATAATTNGCGTGTAATNTNCCGATTAGNGNGGNGAAGTTTCGTTTCAATTTCTNAGNTCCACCCTTGTTNAGTTGTTNGAACTGTGGCATAGNGAGGAAGTGAGTGAGTGAGTGAGAGTAATCCGAGTTAGTTCNATTCCTAACAGGANTCCAAAAAAATTAAAGGATAANGAATGGACCAGCAAAGCAAGTGGTTGTTNGTAAAAAAAAAAAAAA] [-] EMBL AA753462 [TTTTGNATTTCGGGACGGGNAGGGANNAACCGCACGNACCAANTGCCANCCGGAAAAAAAGGGACACCAGCCCNCNGCAGCAAAANCNGTCACGGTTTCCNTNGCCCNTGGACGNGAANTTCACNAANTCNGGCGAGAAGCAGAGAAACACGNTGAGTTNGCGGCGCCGGGGATNCCNTCCGGNANGAACGGTTCGNCCCCTTNNTNTGTTCCAGNGACCACAANNTGNTTTCCAGCCCNNTCCCCGNAACATGNACCTGNCGNTNNTNGCGTTNANAGNTANATTTTNNGGANNATCCATCAATGGCGGGCGCAAGAGATTNTCCGGGATAATTNGCGTGTAATNTNCCGATTAGNGNGGNGAAGTTTCGTTTCAATTTCTNAGNTCCACCCTTGTTNAGTTGTTNGAACTGTGGCATAGNGAGGAAGTGAGTGAGTGAGTGAGAGTAATCCGAGTTAGTTCNATTCCTAACAGGANTCCAAAAAAATTAAAGGATAANGAATGGACCAGCAAAGCAAGTGGTTGTTNGTAAAAAAAAAAAAAA] consensusID : consensus_12735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [CTATACCATGATTACCCAACGCGNAATTACCCTCACTAAAGGAACAAAACTGGAGCTCCACCCGNTGGCGGCCGCGATNCGTCCGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAGCAAGTGGTTGCTCGTAGTAA] [+] EMBL C99420 [CTATACCATGATTACCCAACGCGNAATTACCCTCACTAAAGGAACAAAACTGGAGCTCCACCCGNTGGCGGCCGCGATNCGTCCGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAGCAAGTGGTTGCTCGTAGTAA] consensusID : consensus_12735#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 368 fasta sequence [CGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU076111 [CGGCACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGAAGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTAAAGGATAATGAATGGACCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99608 [ ACGAACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCGTGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGGCGGGCGCAANAGATTATCCGGGATAATTANCNTGTAATCTGCCGATTANTGTGGCGAAGTATCGTTTCAATTTCTTAGCTCCANCCTTGTTTAGTTGTTCGAACTGTGGCATANCGAGGAAGTGAGTGAGTGAGTNAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAAATTNAAGGATAATGAATGGACCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 GGTGGTGGAGAGGCTAAAAAACCAGAGATAAAATGAGAGCAACGCCATGTGCTTCACCCT 60 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CTTCCTTCTTCTATCTCGCTCGCCTTCCCTTCGCTGAAGCATCCGTCCATCTGTTCGCTT 120 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGTCCTCTTGCAATCATTCACTCTCCTTGCTCGATTCTATAAACACGCAGTGAGGCTCCG 180 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 ATCCGCCATCGGCTCACCGCCATTGCTGAGGAACACAGCTTTCTCTTTTTTTTCCCACGA 240 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGTGGCGCCATGGCGAGAGATGTGTGATCCTTGCTGTCGCCGCCGTGGCTCTTGTCGCGG 300 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CGGCGACGGCAACGGCGGCGGCGGCCGTTGGGGGTGAGAGGAGGACGTACATCGTGCACA 360 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGTCGCGGTCGGCGAAGCCGAACGATTTCGTGGAGCACGGCGAGTGGTACGCGGCGTCGC 420 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGCAGTCGGTGTCCGACGCGGCCACCGTGCTGTACACCTACGACACCATCGTCCATGGCT 480 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 ACTCGGCGCGGCTGACGCGCGCGGAGGCCGAGGCGCTGGAGTCGCAGCCCGGGGTGCTCC 540 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCGTCAACCCGGAGGTGCGGTACGAGCTGCACACGACGCGGACGCCGGAGTTCCTGGGGC 600 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGGACCGCACGGACGCGCTGTTCCCGCAGTCGAACACCGGCAGCGACGTCATCGTCGGGG 660 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGCTCGATACCGGCGTGTGGCCGGAGAGGCCGAGCTACGACGACGCCGGGCTCGGCCCCG 720 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGCCGGCGGGATGGAAGGGGAAGTGCGAGGAAGGCAACGACTTCAACGCCTCCGCCTGCA 780 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 ACAAGAAGCTCATCGGCGCGAGGTTCTTCTTGACCGGGTACGAGGCGGCGAAGGGCCCCG 840 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCGACACGTCCAAGGAGTCGCGGTCGCCGAGGGACAACGACGGGCACGGCACGCACACCT 900 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CCAGCACGGCGGCGGGATCCGCCGTGCGCGGCGCCGACCTGCTCGGGTACGCCGCCGGGA 960 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CGGCCAAGGGCATGGCGCCGCACGCGCGCGTCGCGACGTACAAGGTTTGCTGGGTCGGCG 1020 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 GGTGCTTCAGCTCCGACATCCTCAAGGCCATGGAGGTGGCGGTGAACGACGGCGTGGACG 1080 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGCTCTCGCTCTCGCTCGGCGGCGGCACCGCGGACTACTACCGCGACAGCATCGCTGTGG 1140 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 GCGCTTACAGCGCCATGGAAAGGGGGATCTTCGTGTCCTGCTCGGCGGGGAACGCCGGGC 1200 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CAGGCTCGGCCACGCTGTCGAACGGCGCGCCATGGATCACCACCGTCGGGGCCGGGACAC 1260 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCGACCGCGACTTCCCCGCCCACGTCGTCCTCGGCAACGGCAAGAACTACTCCGGCGTCT 1320 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CCCTTTACAGCGGCAAACAGCTGCCCACCACGCCGGTCCCATTCATCTATGCCGGGAACG 1380 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CGTCGAACAGCAGCATGGGCGCGCTCTGCATGTCCGGCAGCCTAATCCCGGAGAAGGTCG 1440 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CCGGCAAGATCGTCCTCTGCGACCGTGGCACCAATGCCAGGGTCCAGAAGGGCTTCGTCG 1500 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCAAGGACGCCGGTGGCGCCGGCATGGTGCTCGCGAACACCGCCGCGAACGGCGAGGAGC 1560 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCGTCGCTGACGCGCACGTCCTCCCGGGCGCCGGTGTCGGGCAGAAGGCCGGCGACACCA 1620 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGAGAGCGTACGCATTGTCCGATCCGAACCCGACGGCCTCCATAGTGTTCGCCGGAACAC 1680 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 AGGTTGGCATCCAGCCATCTCCCGTCGTGGCCGCGTTCTCGTCCAGGGGGCCGAACACCG 1740 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TGACGCCCGGCATCCTCAAGCCGGACCTGATCGCGCCCGGCGTCAACATCCTCGCGGCGT 1800 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 GGTCCGGATCCGTCGGCCCCTCGGGGCTCGCCGGCGACAGCCGCCGCGTCGGATTCAACA 1860 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCATCTCCGGGACGTCCATGTCGTGCCCGCACGTGAGCGGGCTGGCGGCGTTGCTCCGCG 1920 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CGGCGCACCAGGACTGGAGCCCGGCGGCGATCCGCTCGGCGCTGATGACCACGTCGTACA 1980 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 ACGGCTACCCCAACGGCAACGGCATCCTCGACGTGGCCACCGGCCTCCCGGCGACGCCGC 2040 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCGACGTCGGCGCCGGCCACGTCGACCCCAGCAAGGCGGTGGATCCGGGCCTCGTCTACG 2100 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 ACATCGCCGCCGCCGACTACGTCGACTTCCTCTGCGCCATCAGCTACGGGCCGATGCAGA 2160 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 TCGCCGCGCTCACCAAGCACACGACGGACGCCTGCAGCGGCAACCGCACGTACGCGGTGA 2220 consensus_12735#1 ------------------------------------------------------------ consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CCGCGCTCAACTACCCGTCGTTCTCGGTCACGTTCCCGGCGACCGGCGGCACGGAGAAGC 2280 consensus_12735#1 --------------------------------------------------TTTTGNATTT 10 consensus_12735#2 ------------------------------------------------------------ consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 ACACCCGCACGGTGACCAACGTCGGCCAGCCCGGAACATACAAGGTGACAGCCAGCGCCG 2340 consensus_12735#1 CGGGACGGGNAGGGANNAACCGCACGNACCAANTGCCANCCGGAAAAAAAGGGACACCAG 70 consensus_12735#2 -----------------------CTATACCATGATTACCCAACGCGNAATTACCCTCACT 37 consensus_12735#3 ------------------------------------------------------------ consensus_12735#0 CCGCAGGCAGCACGCCGGTCACGGTGTCCGTCGAGCCGTCGACGCTGACGTTCACCAAGT 2400 consensus_12735#1 CCCNCNGCAGCAAAANCNGTCACGGTTTCCNTNGCCCNTGGACGN-GAANTTCACNAANT 129 consensus_12735#2 A----AAGGAACAAAACTGGA-GCTCCACCCGNTGGCGGCCGCGATNC-GTCCGGCACGA 91 consensus_12735#3 ----------------------------------------------------CGGCACGA 8 consensus_12735#0 CCGGCGAGAAGCAGAGCTACACGGTGAGCTTCGCGGCGGCCGCGATGCCGTCCGGCACGA 2460 consensus_12735#1 CNGGCGAGAAGCAGAGAAACACGNTGAG-TTNGCGGCGCCGGGGATNCCNTCCGGNANGA 188 *** * ** consensus_12735#2 ACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCG 151 consensus_12735#3 ACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCG 68 consensus_12735#0 ACGGGTTCGGCCGCCTCGTCTGGTCCAGCGACCACCACGTCGTCTCCAGCCCGATCGCCG 2520 consensus_12735#1 ACGG-TTCGNCCCCTTNNTNTGTTCCAGNGACCACAANNTGNTTTCCAGCCCNNTCCCCG 247 **** **** ** * * * ** ***** ****** * * * ******** ** *** consensus_12735#2 TGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGG 211 consensus_12735#3 TGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGG 128 consensus_12735#0 TGACATGGACCTGACCGTCGTCGCGCTCATAGCTAGATCTTCTGGATGATCCATCAATGG 2580 consensus_12735#1 NAACATGNACCTGNCGNTNNTNGCGTTNANAGNTANATTTTNNGGANNATCCATCAATGG 307 ***** ***** * * * *** * * ** ** ** ** *** ************ consensus_12735#2 CGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGT 271 consensus_12735#3 CGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGT 188 consensus_12735#0 CGGGCGCAAGAGATTATCCGGGATAATTAGCGTGTAATCTGCCGATTAGTGTGGCGAAGT 2640 consensus_12735#1 CGGGCGCAAGAGATTNTCCGGGATAATTNGCGTGTAATNTNCCGATTAGNGNGGNGAAGT 367 *************** ************ ********* * ******** * ** ***** consensus_12735#2 ATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGA 331 consensus_12735#3 ATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGA 248 consensus_12735#0 ATCGTTTCAATTTCTTAGCTCCAGCCTTGTTTAGTTGTTCGAACTGTGGCATAGCGAGGA 2700 consensus_12735#1 TTCGTTTCAATTTCTNAGNTCCACCCTTGTTNAGTTGTTNGAACTGTGGCATAGNGAGGA 427 ************** ** **** ******* ******* ************** ***** consensus_12735#2 AGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAA 391 consensus_12735#3 AGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAA 308 consensus_12735#0 AGTGAGTGAGTGAGTGAGAGTGATCCGAGTTAGCTCCACTCCTAACAGGAGTCCAAAAAA 2760 consensus_12735#1 AGTGAGTGAGTGAGTGAGAGTAATCCGAGTTAGTTCNATTCCTAACAGGANTCCAAAAAA 487 ********************* *********** ** * *********** ********* consensus_12735#2 ATTAAAGGATAATGAATGGACCAGCAAAGCAAGTGGTTGCTCGTAGTAA----------- 440 consensus_12735#3 ATTAAAGGATAATGAATGGACCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 368 consensus_12735#0 ATTAAAGGATAATGAATGGACCAGCAAAGCAAGTGGTTGCTCGTAGTAGTACAGATCAAT 2820 consensus_12735#1 ATTAAAGGATAANGAATGGACCAGCAAAGCAAGTGGTTGTTNGTAAAAAAAAAAAAAA-- 545 ************ *************** ** * * consensus_12735#2 ----------------------- consensus_12735#3 ----------------------- consensus_12735#0 CTCAGGTGATTTATATCTGCATT 2843 consensus_12735#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||