These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1909 fasta sequence [ATCTCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGTTGTCATATATTTTTTTTGAGACCTGCAAGTAAAGTTGCTTCTTTATAGGAAATTATGATCCTTCCTGTTGGTGCCAAAAACTTTGAAG-AAGCAATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATGACTGGGAGCATTCGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACTTA-TTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT-GAGTATACCTGCAATGCTCTTG-TTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCTGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA-TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT-GTTTATGCA-GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAAAGAAA-CGGGAGGGGAACAGTTTGTATTATTGGGCA-TTTGGGCACCACA--TTTTTTTTTTCCGTAGGTGTAGTGGATGAA-CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGGGATTTTAAGAAATAGAGGTTTTCTCCGTT] [+] EMBL CB625718 [ATCTCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGTTGTCATATATTTTTTTTGAGACCTGCAAGTAAAGTTGCTTCTTTATAGGAAATTATGATCCTTCCTNGTGGTGCCAAAAACTTTGAA ] [+] EMBL CB622655 [ATCTCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGTTGTCATATATTTTTTTTGAGACCTGCAAGTAAAGTTGCTTCTTTATAGGAAATTATGATCCTTCCTGTTGGTGCCAAAAACTTTGAAGAAAGC ATGCAGATGGGTTCTGAGACA ] [+] EMBL CB618062 [ATCCCCAACCACATGCGCCGGGCGGCGCCGGCCGTGATCACGAGCGTGCGGGCGCGCCAGATCCTCGACGGCCGCGGGGAGCCCGCCGTGGAGGTCAGCCTCCACACCAACAAGGCCGTGCACCGCGCCTCCGCGGCCGCCGCGGACGCCCCCGAGGGCGCCGCCGCCGACGCCGTCAGGGACGCCGAGAAGCGGAAGCTGCTCGCCAGGGCGGTCGCCGATGCGGTGCGGGTGATCAACGACAAGGTGTCGGAGGCGCTTGTGGGAATGGATCCGCAGCAGCAGTCGCAGATCGACCAGGCCATCATGGACTTGGACAAGGCGCATCACAAGGCTGAGATTGGAGTGAATTCTATGTTGGCTGTATCAATTGCAGCTTGTAAAGCAGGTGCTGCTGAAAAAGAGGTTCCATTGTACAAGCATATAGCAGAACTTGTTGGGAAAAGCGCTACGACACTTCCCATCCCTGCAATTACAGTCATTAATGGAGGAACACATGCTGGAAACAGTCTCCCTATTCAAGTATTCTCACTAAACCTGTAGAATTACCTTTCTTAGCCAACATTTCTCTGCAAATTACTGGATCACTCTTTTCTGCAGATTCCATTAAGAAATCTGCAAAGTTTAAATTTGTTATTCCCATGTTTCTTTCATTGTTTGAAGTTTTCTTTTTCTCTGGGAACATGTTAAGATAGTCCAGGTAAATCAACATCTTGCTATGT ] [+] EMBL AU100970 [ TGATCCTTCCTGTTGGTGCCAAAAACTTTGAAG AAGCAATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATG ] [+] EMBL AU069328 [ TGATCCTTCCTGTTGGTGCCAAAAACTTTGAAG AAGCAATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAt ] [+] EMBL AK058348 [ AATGCAGATGGGTTCTGAGACATATCATCATCTGAAGGATATCATCTTGGAGAAATATGGTTCAAACAGCTGCAACATAGGTGATGATGGTGGATTTGCTCCAAATATTTCCAGCATAACCGAAGGCTTGGATCTTGTCATTGAGGCAATAAATAGAGCTGGATATAATGGAAGGATCAAGCTAGCAATTGATGTCGCCGCTACCGATTTTTGCATGGGAAATAAGTATGACATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATGACTGGGAGCATTCGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACTTA TTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT GAGTATACCTGCAATGCTCTTG TTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCTGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT GTTTATGCA GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAAAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGGCACCACA TTTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGGGATTTTAAGAAATAGAGGTTTTCTCCGTT] [-] EMBL CB625719 [ CATGGAGTTCAAGTTTGCAGAGAAATCAGGGCAGGGCTTCAAAACTGCAGATGATTTGATTGAGATTTATAGCCAGCTTTGTTCAGAGTACCCACTTGTCTCAATCGAACAGCCCTTTGATAAAGATGACTGGGAGCATTCGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACTTA TTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT GAGTATACCTGCAATGCTCTTG TTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCAGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT GTTTATGCA GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAACCAAAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGTCACCACA TTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGG ] [+] EMBL AA749956 [ CGAAGAAGTTTACCACCCTAGAGCTGTGCCAGGTTGTAGGTGATGACCTA TTGATGTCAGATCCCGAACGCATTAGGC GGCAGTAAAT GAGTATACCTGCAATGCTCTTGCTTCTCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGT CGGGGAACCTGATGATT ] [-] EMBL CA762156 [ cTTGTAGGTAATG CTTACTTGATGTCAGATCCCGAACGCATTAAGCGGGCAGTAAAT GAGTATCCCTGCAATGCTCTTG TTCTCAGGGCTAATCAAGTAGGCCCTGTCACGGAGGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCCCATAGGTCCGGGGCCACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCAGCTGGACAGATCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGACGGT GTTTATGCA GGGGAAAATTGGAGAACCCCCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAGAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGGCCCCCCA TTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTGTTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAGGGATTTTAAGAAAaaaaaaa ] [+] EMBL AU100971 [ CGCATTAAGCGGGCAGTAAATGGAGTATACCTGCAATGCTCTTG TTCNCAAGGCTAATCAAGTAGGCACTGTCACGGAAGCCATAGAGGTTGTGAGACAGGCAAAGGATGCTCATTGGGGCGTAATGGTGTCACATAGGTCCGGGGACACTGATGATTCTTTCATTGCTGACTTGGCTGTTGGTGCTGCTGCTGGACAGNTCAAAGCGGGTGCTCCTTGCCGTGGAGAA TGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAAGTGNCGGT GTTTATGCA GGGGAAAATTGGAGAACCACCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGTGCAGGTTCCATCTTGACCTGCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCAAAGAAA CGGGAGGGGAACAGTTTGTATTATTGGGCA TTTGGGCACCACA TTTTTTTTTTCCGTAGGTGTAGTGGATGAA CTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAAaaaaaaaaa ] [+] EMBL BI806959 [ gcgtccGCGGGT CTCCTT CCGTGGAGAATTGTCTCAGTAAATACAATCAGCTGCTTAGAATAGAGGAAGAACTTGGAATTGACGGTGGTTTATCCACGGGGAAAATTGGAGAACCCCCGCAAGCACAAGCTGACTTACAGCGTAGGTACATGAGGT CAGGTTCCATCTTGACCTNCCTTAATGTGCTGAGCTTTCCATGGTTGGCTTGCTCAATTGTGTTTTGTTCTGGCTCGGCAAAGAGCATGGAACAGGACAGCCNAAGAAACCGGGAGGGGAACAGTTTGTATTATT GGCACTTTGGGCACCACACTTTTTTTTTTTCCGTAGGTGTAGTGGATGAACCTTGCGGAGCATTACCTATTTTAGTGATGTTTGACTGCGAATTCATTTCTTTGTGGTGAGCATGGACGTGAGTAAAATGAGTTGAGAAAaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||