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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 3602 fasta sequence
[GCGGCTTCGAAGTTGAACTAGGCGGCGGTGGGCCCACCGCTTCCATTCTTCTCGCCTTTTTCTTCCACCGTTGCGAGTTCTCTCTGCCTGCGCTGCGGCTGCACCCTTCCCCAAGTCGGATTTCCATTGCATTCTCGATTCCATTCCTTCCCCCTCCCCCTCTTTCTTCGACTTGGACTTGGCCTTCCTTCTTCCTCCTCAACCTCGACCTCGATCTAGGTCTAC-GCTCCGCCCTCCGCCCCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCTCCGCGCCGCCTCGGGCCTCGCCCGCCACGCCCTCCGCCGCCGCGTGCCCGTCGCTTCCCGTTTCTTCCACTCGGCGCGGCCGGCCTGGAGGTCCTCCGCCCCGGTGCCCCGCGCCGTCCCGCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCTCCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCGCAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAAGCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTCGACCTTTCCCTCTACGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGGTTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCAGCAAGCTCGAGCAGGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAACTGGCTAAGGGACAAGATCGAGACCGCCAAGCTCAAGGAGTACAACAAGGACCGCCGCCTCGTCATGCTGGACAGGCTCATCTGGAGCACCCAGTTTGAGAACTTCCTCGCCACCAAGTGGGCCACTGCCAAGCGCTTTGGCCTCGAGGGCGGCGAGACCCTCATCCCTGGCATGAAAGAGATGTTTGACAGGGCTGCCGACCTTGGCGTCGAGAACATTGTAATCGGCATGCCACACAGGGGAAGGCTTAATGTGCTTGGCAATGTTGTCCGCAAGCCCTTGTCGCAGATTTTCAGTGAGTTCACCGGTGGGACTAGGCCCGTCGAAGGCGAGGATGGCCTCTACACTGGAACCGGTGATGTCAAGTACCATCTGGGCACCTCCTATGACAGGCCAACTCGAGGTGGAAAGAGGATCCACCTATCGTTGGTTGCGAATCCCAGTCACCTCGAGGCTGTCGATCCTGTTGTCATAGGCAAGACGCGGGCAAAGCAATTTTACTCCAATGATCTTGACAGGACAAAGAACATGGGCATTCTCATCCATGGAGATGGCAGCTTTGCTGGGCAGGGTGTTGTCTATGAGACACTTCATCTGAGTGCCCTTCCAAGCTATACAACTGGAGGAACCATCCACATCGTTGTCAATAACCAAGTTGCCTTCACAACAGATCCAAGAGCCGGCAGATCTTCGCAGTATTGTACGGATGTTGCCAAAGCCTTGAACGCTCCTATATTCCATGTAAACGGTGATGATCTGGAGGCAGTTGTACGAGTTTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTGGTAGTCGATCTGATCTGTTACCGACGATTTGGACATAATGAAATCGATGAGCCCTCCTTCACACAGCCAAAGATGTATCAGGTTATTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAACAGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAATGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTACTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCCAGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCACAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAATTGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGTTAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCATGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG-CAGGGCGCC-TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA-CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA-CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG-CAACAAATTTTG-CAATATAGTAGAAGCTTTAGCTTCCCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100482 [GCGGCTTCGAAGTTGAACTAGGCGGCGGTGGGCCCACCGCTTCCATTCTTCTCGCCTTTTTCTTCCACCGTTGCGAGTTCTCTCTGCCTGCGCTGCGGCTGCACCCTTCCCCAAGTCGGATTTCCATTGCATTCTCGATTCCATTCCTTCCCCCTCCCCCTCTTTCTTCGACTTGGACTTGGCCTTCCTTCTTCCTCCTCAACCTCGACCTCGATCTAGGTCTAC GCTCCGCCCTCCGCCCCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCTCCGCGCCGCCTCGGGCCTCGCCCGCCACGCCCTCCGCCGCCGCGTGCCCGTCGCTTCCCGTTTCTTCCACTCGGCGCGGCCGGCCTGGAGGTCCTCCGCCCCGGTGCCCCGCGCCGTCCCGCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCTCCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCGCAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAAGCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTCGACCTTTCCCTCTACGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGGTTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCAGCAAGCTCGAGCAGGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAACTGGCTAAGGGACAAGATCGAGACCGCCAAGCTCAAGGAGTACAACAAGGACCGCCGCCTCGTCATGCTGGACAGGCTCATCTGGAGCACCCAGTTTGAGAACTTCCTCGCCACCAAGTGGGCCACTGCCAAGCGCTTTGGCCTCGAGGGCGGCGAGACCCTCATCCCTGGCATGAAAGAGATGTTTGACAGGGCTGCCGACCTTGGCGTCGAGAACATTGTAATCGGCATGCCACACAGGGGAAGGCTTAATGTGCTTGGCAATGTTGTCCGCAAGCCCTTGTCGCAGATTTTCAGTGAGTTCACCGGTGGGACTAGGCCCGTCGAAGGCGAGGATGGCCTCTACACTGGAACCGGTGATGTCAAGTACCATCTGGGCACCTCCTATGACAGGCCAACTCGAGGTGGAAAGAGGATCCACCTATCGTTGGTTGCGAATCCCAGTCACCTCGAGGCTGTCGATCCTGTTGTCATAGGCAAGACGCGGGCAAAGCAATTTTACTCCAATGATCTTGACAGGACAAAGAACATGGGCATTCTCATCCATGGAGATGGCAGCTTTGCTGGGCAGGGTGTTGTCTATGAGACACTTCATCTGAGTGCCCTTCCAAGCTATACAACTGGAGGAACCATCCACATCGTTGTCAATAACCAAGTTGCCTTCACAACAGATCCAAGAGCCGGCAGATCTTCGCAGTATTGTACGGATGTTGCCAAAGCCTTGAACGCTCCTATATTCCATGTAAACGGTGATGATCTGGAGGCAGTTGTACGAGTTTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTGGTAGTCGATCTGATCTGTTACCGACGATTTGGACATAATGAAATCGATGAGCCCTCCTTCACACAGCCAAAGATGTATCAGGTTATTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAACAGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAATGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTACTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCCAGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCACAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAATTGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGTTAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCATGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTT ]
[+] EMBL AU166734 [ TCAACCTCGACCTCGATCTAGGTCTACTGCTCCGCCCTCCGNCCCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCTCCGCGCCGCCTCGGGCCTCGCCCGTCACGCCCTCCGCCGCCGTGTGCCCGTNGCTTCCCGTTTNTTCCACTCGGCGCGGNCGGCCTGGAGGTCCTCCGNCCCGGTGCCCCGCGCCGTCCCGCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCTCCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCGCAACTTCCTNGGNCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGn ]
[+] EMBL CB639084 [ TGGGACAACTTCTTCCGCAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGAGAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAAGCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTTTACCTTTCCCTCTACGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGGTTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCACCAAGCTCGAGCAAGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAACTGGCTAAGGGACAA ]
[+] EMBL AK059174 [ TTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAACAGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAATGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTACTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCCAGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCACAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAATTGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGTTAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCACGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG CAACAAATTTTG CAATATAGTAGAAGCTTTAGCT ]
[+] EMBL OS0213A [ CGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGAGGGTATCAAACGCCTTGTATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGAACGCAGTAGTGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCT CCCTCG CTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGAT ]
[-] EMBL CB639083 [ GCTATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAGAGAGAGCTAAAAAGATATCCAAATGCGGAGATTGTCTGGTGCCAAGAGGAACCCATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG CAACAAATTTTG CAATATAGTAGA ]
[+] EMBL BI799345 [ GTCTGGTCCCAAGAGGAACCCATGAACATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATGTGGGCCAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCACCTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCACCTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAGCCAACCAATTTTGCCAATATAGTAGAAGCTTTAGCTTCCCAAAAAAAAAA ]
[+] EMBL C97957 [ nCCCATGAATATGGGCGCATATANTTACATCTCCCCTCGCCTGTACNCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGTATNTGGG CAGGGCGCCTTTCAGCTGCGACAGCTACTGGCTNCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGNGGAACCTGTTTCGNNGTGAG CAAAAAAaaaaaaa ]
[+] EMBL CB483486 [ CAAGTATGTGGG CAGGGCGCC TTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCC TTGCACACATACCATACCATCTTAAAAG TTTGCTATGTATTTACAAGCTAC GTTTCTCTAGC TGTTg ]
[+] EMBL C96896 [ CAGACAGAGCTGGTAAAGAAAGCA CTGCAGGCAGAGCCTATCAAGTNCCCCTGATATGATGCATCTGTGGTTTCCA CTTGGTGCTTATACTTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTGTTTCGACGTGAG CAACAAATTTTG CAATATAGTAGAAGCTTTAGCTTCNAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[GGACGAGACAAGGGGGAATNAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAATCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGGAGGGTATCAAACGCCTTGTATTGNGTTCTGGGAANGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGGAACGCAGTGATGNTGCAATTTGCAGAGTTGAACAACTTTGTCCATTNCCATATGATCNTATNCAGAGAGAGCTTAAAAAGATTTTCCAAATGCCGGAGATTGTCTGGGNGTCAAGAAGGAACCCCATGNACATGGGCCG]
[+] EMBL CA767464 [GGACGAGACAAGGGGGAATNAAACGAGGAGCTGTTTACCGTTAGCAACAGTTCACTTTAGAATTTGCTGTTCTTGGTTTTGAAATGGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTTTTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCTGCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCATTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACCTGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGTGACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAAGCCCCTGATTGTAATGGCCCCCAAGAATCTACTTCGGCACAAGGATTGCAAGTCAAATCTCTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAAGCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGGAGGGTATCAAACGCCTTGTATTGNGTTCTGGGAANGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGGAACGCAGTGATGNTGCAATTTGCAGAGTTGAACAACTTTGTCCATTNCCATATGATCNTATNCAGAGAGAGCTTAAAAAGATTTTCCAAATGCCGGAGATTGTCTGGGNGTCAAGAAGGAACCCCATGNACATGGGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12740#0 GCGGCTTCGAAGTTGAACTAGGCGGCGGTGGGCCCACCGCTTCCATTCTTCTCGCCTTTT 60
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TCTTCCACCGTTGCGAGTTCTCTCTGCCTGCGCTGCGGCTGCACCCTTCCCCAAGTCGGA 120
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TTTCCATTGCATTCTCGATTCCATTCCTTCCCCCTCCCCCTCTTTCTTCGACTTGGACTT 180
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GGCCTTCCTTCTTCCTCCTCAACCTCGACCTCGATCTAGGTCTACGCTCCGCCCTCCGCC 240
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CCCCGCCCCCCGCCGCCGCCAGGGAGGGAGCCGGAGCCGGAGCCGATCGATGGCGTGGCT 300
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CCGCGCCGCCTCGGGCCTCGCCCGCCACGCCCTCCGCCGCCGCGTGCCCGTCGCTTCCCG 360
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TTTCTTCCACTCGGCGCGGCCGGCCTGGAGGTCCTCCGCCCCGGTGCCCCGCGCCGTCCC 420
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GCTGTCCAGGCTTACCGACAGCTTCCTCGACGGCACCAGCAGCGTCTACCTCGAGGAGCT 480
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CCAGCGCGCATGGGAGGCCGACCCCTCCTCCGTCGACGAATCCTGGGACAACTTCTTCCG 540
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CAACTTCCTCGGCCAGGCCGCGCCCTCCTCCGCCGGCCTCTCCGGCCAGACCATCCAGGA 600
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GAGCATGCAGCTCCTCCTCCTCGTCCGTGCCTACCAGGTTAACGGCCACATGAAGGCCAA 660
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GCTCGACCCGCTCCGACTCGACGACCGCGCCGTCCCGGACGACCTCGACCTTTCCCTCTA 720
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CGGCTTCACCGAAGCTGACCTCGACCGCGAGTTCTTCCTCGGCGTTTGGAGGATGGCCGG 780
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TTTCCTCTCCGACAACCGCCCCGTCCTCACCCTCCGCGAGATCCTCAGCAAGCTCGAGCA 840
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GGCCTACTGCGGCCCCATCGGCTACGAGTACATGCACATCCCTGACAGGGACAAGTGCAA 900
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CTGGCTAAGGGACAAGATCGAGACCGCCAAGCTCAAGGAGTACAACAAGGACCGCCGCCT 960
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CGTCATGCTGGACAGGCTCATCTGGAGCACCCAGTTTGAGAACTTCCTCGCCACCAAGTG 1020
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GGCCACTGCCAAGCGCTTTGGCCTCGAGGGCGGCGAGACCCTCATCCCTGGCATGAAAGA 1080
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GATGTTTGACAGGGCTGCCGACCTTGGCGTCGAGAACATTGTAATCGGCATGCCACACAG 1140
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GGGAAGGCTTAATGTGCTTGGCAATGTTGTCCGCAAGCCCTTGTCGCAGATTTTCAGTGA 1200
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GTTCACCGGTGGGACTAGGCCCGTCGAAGGCGAGGATGGCCTCTACACTGGAACCGGTGA 1260
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TGTCAAGTACCATCTGGGCACCTCCTATGACAGGCCAACTCGAGGTGGAAAGAGGATCCA 1320
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CCTATCGTTGGTTGCGAATCCCAGTCACCTCGAGGCTGTCGATCCTGTTGTCATAGGCAA 1380
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GACGCGGGCAAAGCAATTTTACTCCAATGATCTTGACAGGACAAAGAACATGGGCATTCT 1440
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CATCCATGGAGATGGCAGCTTTGCTGGGCAGGGTGTTGTCTATGAGACACTTCATCTGAG 1500
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TGCCCTTCCAAGCTATACAACTGGAGGAACCATCCACATCGTTGTCAATAACCAAGTTGC 1560
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CTTCACAACAGATCCAAGAGCCGGCAGATCTTCGCAGTATTGTACGGATGTTGCCAAAGC 1620
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CTTGAACGCTCCTATATTCCATGTAAACGGTGATGATCTGGAGGCAGTTGTACGAGTTTG 1680
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTGGTAGTCGATCTGATCTG 1740
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TTACCGACGATTTGGACATAATGAAATCGATGAGCCCTCCTTCACACAGCCAAAGATGTA 1800
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TCAGGTTATTAAGAACCATCCTAGTTCATTAAAGCTTTATGAACAGAAACTGCTAGGAAC 1860
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 AGGCGAAGTCTCAAAAGAAGACGTTCAGAAGATCCACGAGAAAGTCAACAGAATCCTGAA 1920
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TGAAGAGTTTGCAAAAAGCAAAGATTATGTTCCCAATAAGAGGGACTGGCTTTCGGCTTA 1980
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CTGGACTGGCTTCAAGTCTCCTGAGCAGATTTCACGCGTCCGCAACACTGGGGTTAATCC 2040
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 AGGGGTGCTGAAACGTGTTGGACAGGCAATTACTACTTTACCTGAAGACTTCAAGCCCCA 2100
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CAGGGCAGTGAAGAAGATTTTTGAGCAGCGTGCAGCAATGATCGAGAGCGGTGAAGGAAT 2160
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TGATTGGGCCGTTGCTGAAGCCCTTGCCTTTGCAACACTCATTGTGGAAGGCAACCATGT 2220
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TAGGCTGAGTGGACAGGACGTGGAAAGAGGAACTTTTAGCCACCGTCATGCAGTTCTGCA 2280
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TGACCAGGAAAACGGGAGGAAACATTGCCCACTTGACCATGTTGTGATGAATCAAAACGA 2340
consensus_12740#1 ----------------------------------GGACGAGACAAGGGGGAATNAAACGA 26
* * * * * * ******
consensus_12740#0 GGAGCTGTTTACCGTTAGCAACAGTTCACTTTCAGAATTTGCTGTTCTTGGTTTTGAAAT 2400
consensus_12740#1 GGAGCTGTTTACCGTTAGCAACAGTTCACTTT-AGAATTTGCTGTTCTTGGTTTTGAAAT 85
******************************** ***************************
consensus_12740#0 GGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTT 2460
consensus_12740#1 GGGGTACTCCATGGAGAACCCTAATTCACTAGTGCTCTGGGAAGCTCAGTTTGGTGACTT 145
************************************************************
consensus_12740#0 TTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCT 2520
consensus_12740#1 TTCCAATGGTGCACAAGTGATGTTTGACCAGTTTTTGAGTAGTGGAGAGGCAAAATGGCT 205
************************************************************
consensus_12740#0 GCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCA 2580
consensus_12740#1 GCGTCAAACTGGCCTTGTCGTTCTACTGCCTCATGGTTATGATGGCCAAGGCCCAGAGCA 265
************************************************************
consensus_12740#0 TTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACC 2640
consensus_12740#1 TTCCAGTGCCCGTTTGGAGCGCTTTCTTCAGATGAGTGATGATAATCCTTTTGTCATACC 325
************************************************************
consensus_12740#0 TGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGT 2700
consensus_12740#1 TGAGATGGAACCAACACTCCGCAAGCAGATCCAGGAGTGTAATTGGCAAGTTGTGAACGT 385
************************************************************
consensus_12740#0 GACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAA 2760
consensus_12740#1 GACAACGCCTGCAAACTATTTCCATGTGCTGCGTCGTCAGATACATAGGGAGTTCCGGAA 445
************************************************************
consensus_12740#0 GCCCCTGATTGTAATGGCCCCCAAGAACCTACTTCGGCACAAGGATTGCAAGTCAAATCT 2820
consensus_12740#1 GCCCCTGATTGTAATGGCCCCCAAGAATCTACTTCGGCACAAGGATTGCAAGTCAAATCT 505
*************************** ********************************
consensus_12740#0 CTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAA 2880
consensus_12740#1 CTCTGAGTTTGATGATGTTGAAGGCCATCCAGGTTTCGATAAGCAAGGAACACGCTTCAA 565
************************************************************
consensus_12740#0 GCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGG-AGGGTATCAAACGCCTTG 2939
consensus_12740#1 GCGGTTGATAAAGGACCGGAATGACCACAAGCAAGTCGAGGGAGGGTATCAAACGCCTTG 625
***************************************** ******************
consensus_12740#0 TATTGTGTTCTGGGAAGGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTG-AACGC 2998
consensus_12740#1 TATTGNGTTCTGGGAANGTGTACTATGAGCTTGATGAAGAACGGAAGAAGACTGGAACGC 685
***** ********** ************************************* *****
consensus_12740#0 AGTGATGTTGCAATTTGCAGAGTTGAACAACTTTGTCCATTCCCATATGATCTTATCCAG 3058
consensus_12740#1 AGTGATGNTGCAATTTGCAGAGTTGAACAACTTTGTCCATTNCCATATGATCNTATNCAG 745
******* ********************************* ********** *** ***
consensus_12740#0 AGAGAGCT-AAAAAGATAT-CCAAATGC-GGAGATTGTCTGG-TGCCAAGAGGAA--CCC 3112
consensus_12740#1 AGAGAGCTTAAAAAGATTTTCCAAATGCCGGAGATTGTCTGGGNGTCAAGAAGGAACCCC 805
******** ******** * ******** ************* * ***** * * ***
consensus_12740#0 ATGAATATGGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTT 3172
consensus_12740#1 ATGNACATGGGCCG---------------------------------------------- 819
*** * ******
consensus_12740#0 GGGCGTGGTTCATTCGATGACATCAAGTATGTGGGCAGGGCGCCTTCAGCTGCGACAGCT 3232
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 ACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAGAAAGCACTGCAG 3292
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 GCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCACTTGGTGCTTATAC 3352
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TTGTGCAAGACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCA 3412
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TCTTAAAAGTTTTGCTATGTATTTACAAGCTACTGTTTCTCTAGCTTGTTTGAGGCGATT 3472
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 CGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTGAGGAGGAACCTG 3532
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 TTTCGACGTGAGCAACAAATTTTGCAATATAGTAGAAGCTTTAGCTTCCCAAAAAAAAAA 3592
consensus_12740#1 ------------------------------------------------------------
consensus_12740#0 AAAAAAAAAA 3602
consensus_12740#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||