These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1120 fasta sequence [CTCCCCAGGCTGCACAGCCCACCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC-TTTTGTTAGTAAATTGCTT-GCATCTAGACAATG-CA-GGACCGATGCTTCTGTATTTAAAAAAAAAAAACTAGAAAAAAAAAGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK119532 [CTCCCCAGGCTGCACAGCCCACCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCG ] [+] EMBL CA999708 [ CCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCG ] [+] EMBL C72516 [ CCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCGTCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCG GCGCGCCAGATGGCG AG TCGGGCCGTCCGCGAC GCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGNTTCCG ] [+] EMBL AK065851 [ CCGCCTCGTCGTCGCCATCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAGCATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCG ] [+] EMBL OS1438A [ CGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAGGCGCTCCG G GCGCCAGATGGCG AG TCGGGCCGTCCGCGAC GNGATGCAGGGGCACATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAGAAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACATTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAGAATGTTACAATCAACTATCCATTTGAGAAGGGTCCTT ] [-] EMBL CF326268 [ TCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCGATGCTTCTGTATTTAAAA ] [+] EMBL CB679716 [ TATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACC TC A AAAAAAAAAAAACTAGAAAAAAAAAGAAAT ] [+] EMBL CA767418 [ TATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATCTTGAACAAAATATTGTGGTTCAGAATGCACC T ] [+] EMBL AU056989 [ AAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCA TTTGAACNAAATATTGTGGTTCAGAATGCACCTTTTTGTTAGTAAATTGCTTGGCATCTAGACAATGCCAGGGACCGATGCTTCTGT ] [+] EMBL CF312227 [ CATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCATTTTGAACAAAATATTGTGGTTCAGAATGCACC TTTTGTTAGTAAATTGCTT GCATCTAGACAATG CA GGACCGATGCTTCTGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [AATTGGGGCCCCANNCCAAGATATGATATTGATATGCCCAAATGCATCTATTGTGGCTTCTGCCAANAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTNCTGTTGTCGACTCANATGGCATTTTGAACAAAATATTGTGGTTCAGAAAAAAAAAAAAA] [+] EMBL AT003426 [AATTGGGGCCCCANNCCAAGATATGATATTGATATGCCCAAATGCATCTATTGTGGCTTCTGCCAANAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTNCTGTTGTCGACTCANATGGCATTTTGAACAAAATATTGTGGTTCAGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12746#0 CTCCCCAGGCTGCACAGCCCACCCCCGACCACCCCTCGATCCGCCTCCGCCTCCGCCTCG 60 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 TCGTCGCCGTCGACGCCCCCACCCACCATGGCGGCGCTCCTCGCCCGGCAGGCAGCGCAG 120 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 GCGCTCCGCGCGCGCCAGATGGCGCAGCTCGGGCCGTCCGCGACGGCGATGCAGGGGCAC 180 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 ATCCGGACCTACATGGGCGCAGGGAAGCCCACGAGGTTCAAAGAGGATGAGGAGAAAGAG 240 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 AAGCTTGCAAAGGAGATAGCGAAAGATTGGAATGCTGTATTTGAAAGGAGCATCAACACA 300 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 TTGTTTTTGACTGAAATGGTCCGCGGTTTGATGCTGACACTCAAGTACTTCTTCGAGAAG 360 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 AATGTTACAATCAACTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGCTTCCGAGGAGAG 420 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 CATGCTCTCAGACGCTATCCAACTGGAGAAGAGCGTTGCATCGCCTGTAAACTATGTGAA 480 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 GCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGT 540 consensus_12746#1 ---------------------------------------------------AATTGGGGC 9 * * * consensus_12746#0 AGAACTACAAGATATGATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAA 600 consensus_12746#1 CCCANNCCAAGATATGATATTGATATGCCCAAATGCATCTATTGTGGCTTCTGCCAANAA 69 * ******************** ***************************** ** consensus_12746#0 GCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAA-CCCA 659 consensus_12746#1 GCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAACTTTGAGTTTGCTACTGAAAACCCA 129 ******************************************************* **** consensus_12746#0 TGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGA 719 consensus_12746#1 TGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGACTGA 189 ************************************************************ consensus_12746#0 GATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAG 779 consensus_12746#1 GATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAG 249 ************************************************************ consensus_12746#0 GATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAA 839 consensus_12746#1 GATTCAGCATTTCCCTGTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAA 309 ************************************************************ consensus_12746#0 CCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGG 899 consensus_12746#1 CCTAAATACCTGGTACCATGCTTTTGTACCTTGGTCCATCATTTGTTATTTTGTGCCAGG 369 ************************************************************ consensus_12746#0 GTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGATGGCA 959 consensus_12746#1 GTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTNCTGTTGTCGACTCANATGGCA 429 ************************************** ************** ****** consensus_12746#0 TTTTGAACAAAATATTGTGGTTCAGAATGCACCTTTTGTTAGTAAATTGCTTGCATCTAG 1019 consensus_12746#1 TTTTGAACAAAATATTGTGGTTCAGAAAAAAAAAAAAA---------------------- 467 *************************** * consensus_12746#0 ACAATGCAGGACCGATGCTTCTGTATTTAAAAAAAAAAAACTAGAAAAAAAAAGAAATAA 1079 consensus_12746#1 ------------------------------------------------------------ consensus_12746#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1120 consensus_12746#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||