cluster # 1275

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Oryza sativa
cluster # 1275 cluster # 1275 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1275#0 length = 475 sequences # 1

consensus_1275#1 length = 362 sequences # 1

consensusID : consensus_1275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGYATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCATGTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG]

[+] EMBL BE229386             [CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGYATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCATGTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG]




>consensus_1275#0
CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAA
GCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCC
TTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGC
CTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGY
ATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAA
GCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGG
GTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCAT
GTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG

consensusID : consensus_1275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [GGAGTGAAACTAATTCCTGCTGCAGCGTGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTTC]

[+] EMBL CF301092             [GGAGTGAAACTAATTCCTGCTGCAGCGTGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTTC]




>consensus_1275#1
GGAGTGAAACTAATTCCTGCTGCAGCGTGACTCTGCTCTAGCACCTCACCAAGCAGAAAG
CTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCT
TCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCC
TCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGCA
TCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGC
AGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGT
TC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1275#0      CGAGCTCGTCGAATTCGGGCAGCGGGGGGACTTCTGCTCTAGCACCTCACCAAGCAGAAA 60
consensus_1275#1      GGAGTGAAACTAATTCCTGCTGCAGCGTGACT-CTGCTCTAGCACCTCACCAAGCAGAAA 59
                       ***     * *****  ** ** * * **** ***************************

consensus_1275#0      GCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGSCTCGTYGGCCACCTCCGTTGCTCCC 120
consensus_1275#1      GCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCC 119
                      ********************************** ***** *******************

consensus_1275#0      TTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGSCGGC 180
consensus_1275#1      TTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGC 179
                      ******************************************************* ****

consensus_1275#0      CTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGY 240
consensus_1275#1      CTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTGTGGCCGATTGAAGGC 239
                      *********************************************************** 

consensus_1275#0      ATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGGRCCTCTTGAA 300
consensus_1275#1      ATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGG-ACCTCTTGAA 298
                      *************************************************  *********

consensus_1275#0      GCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGG 360
consensus_1275#1      GCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGG 358
                      ************************************************************

consensus_1275#0      GTKCGTCTACCGTGAGAACCACAGGTCTCCTGGGTACTATGATGGAAGGTACTGGACCAT 420
consensus_1275#1      GTTC-------------------------------------------------------- 362
                      ** *                                                        

consensus_1275#0      GTGGAAGBTGCTATGTTGCGATGCACTGATSCACCAGMGTGCTCAAGCGAGCTCG 475
consensus_1275#1      -------------------------------------------------------