These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 884 fasta sequence [CCGTTCGTCCTCCTGTCCGGTCCGAGTCCCTCTGACGACGCGACTTTCCCCACGCCGGGATCGAGCTCCGGGGAGGGGAGCTGCGAGCTGAAACACTTTGTCATATCAGTCAACAGTAGAGAGGAGACCAGATGCAGGCATCTAGAGCTAGGCTCTTT-AAGGAGTATAAGGAGGTGC-AGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT-GATTCAAA-CATATTCAAGTGGACTGCTCTTAT-CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAATGCACTGTCCATTGTTCAATAACTTCTCCTCTTTTTCCTGTCCGGATAAAAAAAAAAA] [+] EMBL CF278152 [CCGTTCGTCCTCCTGTCCGGTCCGAGTCCCTCTGACGACGCGACTTTCCCCACGCCGGGATCGAGCTCCGGGGAGGGGAGCTGCGAGCTGAAACACTTTGTCATATCAGTCAACAGTAGAGAGGAGACCAGATGCAGGCATCTAGAGCTAGGCTCTTT AAGGAGTATAAGGAGGTGC AGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAG ] [+] EMBL CF337340 [CCGTTCGTCCTCCTGTCCGGTCCGAGTCCCTCTGACGACGCGACTTTCCCCACGCCGGGATCGAGCTCCGGGGAGGGGAGCTGCGAGCTGAAACACTTTGTCATATCAGTCAACAGTAGAGAGGAGACCAGATGCAGGCATCTAGAGCTAGGCTCTTT AAGGAGTATAAGGAGGTGC AGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGC TCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAG ATGCGTGGAGCCCAGCAT ] [+] EMBL AK059694 [ CGTTCGTCCTCCTGTCCGGTCCGAGTCCCTCTGACGACGCGACTTTCCCCACGCCGGGATCGAGCTCCGGGGAGGGGAGCTGCGAGCTGAAACACTTTGTCATATCAGTCAACAGTAGAGAGGAGACCAGATGCAGGCATCTAGAGCTAGGCTCTTT AAGGAGTATAAGGAGGTGC AGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAATGCACTGTCCA ] [+] EMBL AU100835 [ GGTCCGAGTCCCTCTGACGACGCGACTTTCCCCACNCCGGGATCGAGCTCCGGGGAGGGGAGCTGCGAGCTGAAACACTTTGTCATATCAGTCAACAGTAGAGAGGAGACCAGATGCAGGCATCTAGAGCTAGGCTCTTT AAGGAGTATAAGGAGGTGC AGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACA ] [+] EMBL CA762670 [ ACTTTCCCCACGCCGGGATCGAGCTCCGGGGAGGGGAGCTGCGAGCTGAAACACTTTGTCATATCAGTCAACAGTAGAGAGGAGACCAGATGCAGGCATCTAGAGCTAGGCTCTTT AAGGAGTATAAGGAGGTGC AGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCGAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTGTGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAATGCACTGTCCATTGTTCAATAACTTCTCCTCTTTTTCCTGTCCGGATAAAAAAAAAAA] [+] EMBL AU100836 [ AGCTAGGCTCTTTAAAGGAGTATAAGGAGGTGCNAGCGAGAAAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGATGGATTCAAACCATATTCAAGTGGACTGCTCTTATNCAAGGG CCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGCTTCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAATGCAaaaa ] [-] EMBL CF317886 [ AAAGTCAGCTGATCCAGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAAGTTCGC TCTTGACCAAAATTTTCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAG ATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCGGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGTCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAAa ] [+] EMBL AA749568 [ AGATATCCAGTTAATCTGCGAT GATTCAAA CATATTCAAGTGGACTGCTCTTAT CAAGGGCCCTTCGGAGACACCTTTTGAAGGTGGTGTATTTCAACTTGCATTCTCTATTCCTGAGCAATACCCTCTCCTTCCTCCGCAA NTCGCTTCTTGACCAAAATTTTGCGCCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTT ] [-] EMBL CF278153 [ TCCACCCGAATGTGCATTTCAAGACAGGTGAGATTTGCCTGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAATGCACTGTCCATTGTTCAAAAAaaa ] [+] EMBL CF329439 [ TGGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAAaa ] [-] EMBL CF329438 [ GGATATCTTGAAGAATGCGTGGAGCCCAGCATGGACACTACAATCCGTTTGTAGAGCCATAATTGCATTGATGGCCCATCCTGAACCAGACAGTCCACTTAACTGTGACTCAGGCAACCTCCTGCGCTCAGGCGACATCAGAGGCTATCAATCCATGGCAAGAATGTATACTAGGTTGGCTGCCATGCCAAAGAAAGGTTAACTCCAGGGTGCAAAAGGAAATATGCGCCAAGCGAAGGCATGGCTGATTCATGTGATTTGCTCTGTTAAGTGTAACTCTTACTGTCACCATGTGAACATCTGGTACTTATTTTCTTACCTCACTCTTATGGATGTATGCCCTGGAGTGAAGAGAAGAAAAACATGCATTGTAATGCTTGGTCTATATGATGTCATAAATATAACTGGGTTCGGTACTTCTAAaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||