These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2701 fasta sequence [CACCACCACCACCGCTTCGTCCGCCCCGTGCCCCAACGGCCGACGCTGCTGCACGGCACGGCCCCCGGCCGAATCTGCCGTGCGCGGGTTGGCACAGTGGCACACGCCCAAATTCCATCCCTCCCGTCCCTAGCCGGTTCCTCTCCTTCCTCCCCCCCTCGCAAAAATTCAAAAAAAAGCTTGCGCTCCTCCCGTCCTCCGGCGCCGATCTGCTCGAAGGAGGCCACCCCCAACCTCCCCGACCAAACCAATGGCTTCCTCCAACGAAACCTACCGCGTCGAGCTCCGAGCCGCCGCCCGCCAGCTCGGCGAGCGCGGCCTCTACTCCGCCGCCAAATGGGCGGCCGAGCTGCTCGTCGGAATCGAGCCCGACGCGACGCCGGCCCCGTCGTCGGTGATGGACACCCCTTCCTCGTCGGGCTCCGCCGCATCCGGGGGCCGCCTCCTGCACCTCCACCGCAGCGGCGGGTCCAGCTTCCGCCGCCGCCTCCGCCCGGGCGCGGCCGAGGCCGGGACGCCGCTCGGCGGCGTCTCGTACGTCAGCACGCCCATCCCCGACGACGACGCGTTCGACGTGGGGGGTGATAGGTACCTGCTCGCCAAGACCTACTTCGACTGCCGCGAGTACCGCCGCGCCGCGCACGTCCTGCGCGGCCAGACCGGCCGCAAGGCCGTGTTCCTTCGGTGCTATGCCCTGTACACGGCTGGAGAGAAACGGAAAGAGGAAGAAACAGTCGAGCTTGAGGGATCTCTGGGCAAAAGCAATGCTGTTAATCAGGAACTAGTTGCATTGGAGAGAGAGCTCGCAACACATCGGAGAACTGGTGCTATTGATTCATTTTGTTTGTACTTGTATGGCATTGTTCTACGTGATAAAGGCAGTGAAGCTCTAGCTAGAACAGTTCTGGTGGAATCTGTCAACAGCTACCCTTGGAACTGGAGTGCTTGGTTAGAGTTACAATCTCTCTGCACTAGCAGTGACATTTTGAACAACTTAAATATCAAGAATCACTGGATGAAAGATTTCTTCCTTGCTAGTGCACATCTCGAATTAAAAATGCATGAAGAAGCTTTGAAAAGATATGAGCGCTTAATGGGGGTTTTCCGTTGCAGTGACTACATTCAGGCTCAAATAGCTACCGTGCAGTATAGTATGAGAGACCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAGGACTGATCCTTTCCGTGTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGAAAGCTCGACTGCTTTGAGTTTCCTTGCTCACAGAGTATTTTTGTCAGATAAATATCGCCCAGAATCTTGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATGAAAAATCAGTTCTGTACTTTCAAA-GAGCGCTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACTCTTATGGGACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGTTGATATAAATCCCAGAGATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAGATGATGGGAATGCCGTTTTATGCAGTTTATTACTTCCGTAAGTCATCATACCTACAACCTAATGATGCCCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGTGATCAACTCCAGATGATTGAAGAAGCCATCAAGTGCTATGAGAGATCTGCAAATAATAATGACACCGAAGGAATAGCACTTCATCAGCTAGCAAAGTTACATGGTATGCTTGGACAATCAGAGGAGGCAGCATTTTACTACAAGAAGGATCTAGAGAGAATGGAAGTTGAGGAAAGGCAGGGCCAGAATTTTGTTGAAGCTCTGCTTTTCCTTGCTAAGCATTGCAAGAGCATAGGCAGGTTTGAGGAGGCAGAGCACTATTGCACAAGGCTCTTGGATTACACCGGTCCGGAAAGGGAGACTGCAAAAAGTATTTTGCAAGGGCTAAAAAGAGCACAATCGGTACTTCCGTTGATGGATATCGACCATTTTGCAATGTAAATTTGACTTGCAGATAAGTTATTTAGTTGGAAACTAAGGTGTTAAGTGAGATGTACAAGAGAAAACTACCCCTTGCGTATTCTTTTCTCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATCATGAACAAAGGGGATTGGTTATCACTCACACCGCACCAGGCAAGGAAAAGAAATCTATCTAAGGCCACACACTGACCCACCTGATGAAACTGGTACTT-TGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTATGGCTTTTCTTCACTAGATTGCTTTGGTCTGTGTTGCACTCAAAGTTCCATGGAGTTGCTTGCATATATAAGCTTCTTGGAAGACTTGCCTTGTCTGGATTCCAGTTCTCATATTCTTGCTTGTTAAAATAATTGTTGATGC] [+] EMBL AK070096 [CACCACCACCACCGCTTCGTCCGCCCCGTGCCCCAACGGCCGACGCTGCTGCACGGCACGGCCCCCGGCCGAATCTGCCGTGCGCGGGTTGGCACAGTGGCACACGCCCAAATTCCATCCCTCCCGTCCCTAGCCGGTTCCTCTCCTTCCTCCCCCCCTCGCAAAAATTCAAAAAAAAGCTTGCGCTCCTCCCGTCCTCCGGCGCCGATCTGCTCGAAGGAGGCCACCCCCAACCTCCCCGACCAAACCAATGGCTTCCTCCAACGAAACCTACCGCGTCGAGCTCCGAGCCGCCGCCCGCCAGCTCGGCGAGCGCGGCCTCTACTCCGCCGCCAAATGGGCGGCCGAGCTGCTCGTCGGAATCGAGCCCGACGCGACGCCGGCCCCGTCGTCGGTGATGGACACCCCTTCCTCGTCGGGCTCCGCCGCATCCGGGGGCCGCCTCCTGCACCTCCACCGCAGCGGCGGGTCCAGCTTCCGCCGCCGCCTCCGCCCGGGCGCGGCCGAGGCCGGGACGCCGCTCGGCGGCGTCTCGTACGTCAGCACGCCCATCCCCGACGACGACGCGTTCGACGTGGGGGGTGATAGGTACCTGCTCGCCAAGACCTACTTCGACTGCCGCGAGTACCGCCGCGCCGCGCACGTCCTGCGCGGCCAGACCGGCCGCAAGGCCGTGTTCCTTCGGTGCTATGCCCTGTACACGGCTGGAGAGAAACGGAAAGAGGAAGAAACAGTCGAGCTTGAGGGATCTCTGGGCAAAAGCAATGCTGTTAATCAGGAACTAGTTGCATTGGAGAGAGAGCTCGCAACACATCGGAGAACTGGTGCTATTGATTCATTTTGTTTGTACTTGTATGGCATTGTTCTACGTGATAAAGGCAGTGAAGCTCTAGCTAGAACAGTTCTGGTGGAATCTGTCAACAGCTACCCTTGGAACTGGAGTGCTTGGTTAGAGTTACAATCTCTCTGCACTAGCAGTGACATTTTGAACAACTTAAATATCAAGAATCACTGGATGAAAGATTTCTTCCTTGCTAGTGCACATCTCGAATTAAAAATGCATGAAGAAGCTTTGAAAAGATATGAGCGCTTAATGGGGGTTTTCCGTTGCAGTGACTACATTCAGGCTCAAATAGCTACCGTGCAGTATAGTATGAGAGACCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAGGACTGATCCTTTCCGTGTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGAAAGCTCGACTGCTTTGAGTTTCCTTGCTCACAGAGTATTTTTGTCAGATAAATATCGCCCAGAATCTTGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATGAAAAATCAGTTCTGTACTTTCAAA GAGCGCTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACTCTTATGGGACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGTTGATATAAATCCCAGAGATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAGATGATGGGAATGCCGTTTTATGCAGTTTATTACTTCCGTAAGTCATCATACCTACAACCTAATGATGCCCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGTGATCAACTCCAGATGATTGAAGAAGCCATCAAGTGCTATGAGAGATCTGCAAATAATAATGACACCGAAGGAATAGCACTTCATCAGCTAGCAAAGTTACATGGTATGCTTGGACAATCAGAGGAGGCAGCATTTTACTACAAGAAGGATCTAGAGAGAATGGAAGTTGAGGAAAGGCAGGGCCAGAATTTTGTTGAAGCTCTGCTTTTCCTTGCTAAGCATTGCAAGAGCATAGGCAGGTTTGAGGAGGCAGAGCACTATTGCACAAGGCTCTTGGATTACACCGGTCCGGAAAGGGAGACTGCAAAAAGTATTTTGCAAGGGCTAAAAAGAGCACAATCGGTACTTCCGTTGATGGATATCGACCATTTTGCAATGTAAATTTGACTTGCAGATAAGTTATTTAGTTGGAAACTAAGGTGTTAAGTGAGATGTACAAGAGAAAACTACCCCTTGCGTATTCTTTTCTCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATCATGAACAAAGGGGATTGGTTATCACTCACACCGCACCAGGCAAGGAAAAGAAATCTATCTAAGGCCACACACTGACCCACCTGATGAAACTGGTACTT TGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTATGGCTTTTCTTCACTAGATTGCTTTGGTCTGTGTTGCACTCAAAGTTCCATGGAGTTGCTTGCATATATAAGCTTCTTGGAAGACTTGCCTTGTCTGGATTCCAGTTCTCATATTCTTGCTTGTTAAAATAATTGTTGATGC] [+] EMBL C28583 [ TCTTGAACTAAAAATGCATGAAGAAGCTTTGAAAAGATATGAGCGCTTAATGGGGGTCTTCCGTTGCAGTGACTACATTCAGGCTCAAATAGCTACTGTGCAGTATAGTATGAGAGATCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAGGACTGATCCTTTTCGTCTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGAAAGCTCGACTGCTTTAAGTTTCCTTGCTCACAGAGTATTTTTGACAGATAAATATCGCCCAGAATCATGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATG AAAATCAGTTTTGTACTTTCAAANGAGCACTGAAGCTTAATCGAAGGTATCTTTCAGCTTTGNCCCNTATGGGACATGAGTTTGTTGAGCT AAAAATACACCTGCTGCGATTGAT ] [-] EMBL OSS16283A [ AGAAAACTACCCCTTGCGTATTCTTTTCTCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATCATGAACAAAGGGGATTGGTTATCACTCACACCGCACCAGGCAAGGAAAAGAAATCTA CTAAGGCCACACACTGACCCACCTGATGAAACTGGTACTT TGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGC TTCTGCTAGGTTCTGTTTCTATGGC TNTCTTCACTA ATTGCg ] [+] EMBL CB967181 [ AACTACCCCTGGCGTATTCTTTTCTTCATTTTGGCATGCATCGAGGAAAGCTACACATGGGTTTCAAGAGAACTGGTATAATACAGAACAGTCATCATGAACAAAGGGGATGGGTTATCACTCACACCGCACCAGGCAAGGAAAAGAAATCTATCTAAGGGCACACACTGACCCACCTGATGAAACTGGTACTTGGGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTGGTATCCTTGCCAGAAAACTCCATATGGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAACAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTATGTTTCTATGGCTTTTCTTCACTAGATAGCT ] [+] EMBL CB967180 [ AACTACCCCTTGCGTATTCTTTTCTTCATTTTGGCATGCATCGAGGAAAGCTACACATGGGTTTCAAGAGAACTGGTATAATACAGAACAGTCATCATGAACAAAGGGGATGGGGTATCACTCACACCGGACCAGGCAAGGAAAAGAAATCTATCTAAGGGCACACACTGACCCACCTGATGAAACTGGTACTT TGGGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATGGGTGGGATCCTTGGCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGGTATGTTTCTATGGCTTTTCTTCACTAGATTGCT ] [-] EMBL AK058940 [ ACCCCTTGCGTATTCTTTTCTCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATCATGAACAAAGGGGATTGGTTATCACTCACACCGCACCAGGCAAGGAAAAGAAATCTATCTAAGGCCACACACTGACCCACCTGATGAAACTGGTACTT TGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTATGGCTTTTCTTCACTAGATTGCTTTGGTCTGT ] consensusID : consensus_12764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [TCCCCANCAGNCGAGAAAAAAGGGAGAACGTTGGCACCACCAGAGGAGGCGGCCGCACAAAGAACANGTGACTCCCCCGGGCAGACGAAATCCGGCGCGAGGCCACGTGCCGAATCGGCACGAGGCTACATTCAGGCTCAAATAGCTACTGTGCAGTATAGTATGAGAGATCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAGGACTGATCCTTTTCGTGTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGAAAGCTCGACTGCTTTAAGTTTCCTTGCTCACAGAGTATTTTTGACAGATAAATATCGCCCAGAATCATGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATGAAAATCAGTTTTGTACTTTCAAAGAGCACTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACCCTTATGGGACATGAGTTTGTAGAGCTATAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGTTGATATAAATCCCAGATATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAAATGATGGGAATGCCGTCTTATGCCGTTTATTACTTCCGTAAATTGTCATACCTACCACCTACTGATCCCCCGCTTTGGATTGCTATGGCTCAGTGCTTTGAAACCCAATCCACCCCTGATAATGGAAAAACCTTCCGTTCCTATTAAATATCGGCANNTT] [+] EMBL CA753455 [TCCCCANCAGNCGAGAAAAAAGGGAGAACGTTGGCACCACCAGAGGAGGCGGCCGCACAAAGAACANGTGACTCCCCCGGGCAGACGAAATCCGGCGCGAGGCCACGTGCCGAATCGGCACGAGGCTACATTCAGGCTCAAATAGCTACTGTGCAGTATAGTATGAGAGATCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAGGACTGATCCTTTTCGTGTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGAAAGCTCGACTGCTTTAAGTTTCCTTGCTCACAGAGTATTTTTGACAGATAAATATCGCCCAGAATCATGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATGAAAATCAGTTTTGTACTTTCAAAGAGCACTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACCCTTATGGGACATGAGTTTGTAGAGCTATAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGTTGATATAAATCCCAGATATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAAATGATGGGAATGCCGTCTTATGCCGTTTATTACTTCCGTAAATTGTCATACCTACCACCTACTGATCCCCCGCTTTGGATTGCTATGGCTCAGTGCTTTGAAACCCAATCCACCCCTGATAATGGAAAAACCTTCCGTTCCTATTAAATATCGGCANNTT] consensusID : consensus_12764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [TTTTTTTTGAAGGGGCAGCATGAAAAATCAGTTCTGTACTTTCAAAGAGCGCTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACTCTTATGGGACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGTTGATATAAATCCCAGAGATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAGATGATGGGAATGCCGTTTTATGCAGTTTATTACTTCCGTAAGTCATCATACCTACAACCTAATGATGCCCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGTGATCAACTCCAGATGATTGAAGAAGCCATCAAGTGCTATGAGAGATCTGATGAAACTGGTACTTTGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTA] [-] EMBL CA998209 [TTTTTTTTGAAGGGGCAGCATGAAAAATCAGTTCTGTACTTTCAAAGAGCGCTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACTCTTATGGGACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGTTGATATAAATCCCAGAGATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAGATGATGGGAATGCCGTTTTATGCAGTTTATTACTTCCGTAAGTCATCATACCTACAACCTAATGATGCCCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGTGATCAACTCCAGATGATTGAAGAAGCCATCAAGTGCTATGAGAGATCTGATGAAACTGGTACTTTGCGTATCTCCAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTA] consensusID : consensus_12764#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence [NGGCAGGTNTGAGGAGGCAGAGCACTATTGCACAAGGCTATNGGATTACACCGGTCCAGAAAGGGAGACTGCAAANAGTATNNTGCAAGGGANAAAAAGATCACAATCGGTACTTCCGTTGATGGATATCGACCATTTNGCAATGTAAATTGGACTTGCAGATAAGTTATTTAGTTGAAGAANTAAGGTGTTAAGCGGCAGATGTACAAGAGAAAACTACCCCTTGCATATTCTTTTCTCCATTTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATGAACAAGGGGATTGGTTATCACTCACACCACACCAAGCAAGGAAAAGAAATCTATCAAGGCCACAGACTGGCCCTGTTCTTTCTCTAATAAAAGTTGGATAAACTTTTGGATACTCGTGGCACACTTTTCAAGCTACTAAACGGTGTGTTTTGTACGAAAACTTTCTATATAAAAGTTGTTCTAAAATATCAGATTAATCCAAAAAAAA] [-] EMBL AU225266 [NGGCAGGTNTGAGGAGGCAGAGCACTATTGCACAAGGCTATNGGATTACACCGGTCCAGAAAGGGAGACTGCAAANAGTATNNTGCAAGGGANAAAAAGATCACAATCGGTACTTCCGTTGATGGATATCGACCATTTNGCAATGTAAATTGGACTTGCAGATAAGTTATTTAGTTGAAGAANTAAGGTGTTAAGCGGC ] [+] EMBL AU172310 [ GGGCTAAAAAGATCNCAATCGGTACTTCCGTTGATGGATATCGACCATTTTGCAATGTAAATTGGACTTGCAGATAAGTTATTTAGTTGAAGAACTAAGGTGTTATAAGTGAGATGTACAAGAGAAAACTACCCCTTGCATATTCTTTTCTCCATTTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATGAACAAGGGGATTGGTTATCACTCACACCACACCAAGCAAGGAAAAGAAATCTATCAAGGCCACAGACTGGCCCTGTTCTTTCTCTAATAAAAGTTGGATAAACTTTTGGATACTCGTGGCACACTTTTCAAGCTACTAAACGGTGTGTTTTGTACGAAAACTTTCTATATAAAAGTTGTTCTAAAATATCAGATTAATCCAAAAAAAA] consensusID : consensus_12764#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGAGAAAACTACCCCTTGCGNANTCTTTTCNCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAANAGAACTGCNATAATACAAAACAGTCANCATGAACAAAGGGGATTNGTTANCACNCACACCGNACNAGGCAAGGAAAAGAAATC] [-] EMBL AU162141 [TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGAGAAAACTACCCCTTGCGNANTCTTTTCNCCATTTTTGCATGCATCGAGGAAAGCTACACATTGGTTTCAANAGAACTGCNATAATACAAAACAGTCANCATGAACAAAGGGGATTNGTTANCACNCACACCGNACNAGGCAAGGAAAAGAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CACCACCACCACCGCTTCGTCCGCCCCGTGCCCCAACGGCCGACGCTGCTGCACGGCACG 60 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 GCCCCCGGCCGAATCTGCCGTGCGCGGGTTGGCACAGTGGCACACGCCCAAATTCCATCC 120 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTCCCGTCCCTAGCCGGTTCCTCTCCTTCCTCCCCCCCTCGCAAAAATTCAAAAAAAAGC 180 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TTGCGCTCCTCCCGTCCTCCGGCGCCGATCTGCTCGAAGGAGGCCACCCCCAACCTCCCC 240 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 GACCAAACCAATGGCTTCCTCCAACGAAACCTACCGCGTCGAGCTCCGAGCCGCCGCCCG 300 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CCAGCTCGGCGAGCGCGGCCTCTACTCCGCCGCCAAATGGGCGGCCGAGCTGCTCGTCGG 360 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AATCGAGCCCGACGCGACGCCGGCCCCGTCGTCGGTGATGGACACCCCTTCCTCGTCGGG 420 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTCCGCCGCATCCGGGGGCCGCCTCCTGCACCTCCACCGCAGCGGCGGGTCCAGCTTCCG 480 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CCGCCGCCTCCGCCCGGGCGCGGCCGAGGCCGGGACGCCGCTCGGCGGCGTCTCGTACGT 540 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CAGCACGCCCATCCCCGACGACGACGCGTTCGACGTGGGGGGTGATAGGTACCTGCTCGC 600 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CAAGACCTACTTCGACTGCCGCGAGTACCGCCGCGCCGCGCACGTCCTGCGCGGCCAGAC 660 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CGGCCGCAAGGCCGTGTTCCTTCGGTGCTATGCCCTGTACACGGCTGGAGAGAAACGGAA 720 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AGAGGAAGAAACAGTCGAGCTTGAGGGATCTCTGGGCAAAAGCAATGCTGTTAATCAGGA 780 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 ACTAGTTGCATTGGAGAGAGAGCTCGCAACACATCGGAGAACTGGTGCTATTGATTCATT 840 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TTGTTTGTACTTGTATGGCATTGTTCTACGTGATAAAGGCAGTGAAGCTCTAGCTAGAAC 900 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AGTTCTGGTGGAATCTGTCAACAGCTACCCTTGGAACTGGAGTGCTTGGTTAGAGTTACA 960 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 ATCTCTCTGCACTAGCAGTGACATTTTGAACAACTTAAATATCAAGAATCACTGGATGAA 1020 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AGATTTCTTCCTTGCTAGTGCACATCTCGAATTAAAAATGCATGAAGAAGCTTTGAAAAG 1080 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 ATATGAGCGCTTAATGGGGGTTTTCCGTTGCAGTGACTACATTCAGGCTCAAATAGCTAC 1140 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CGTGCAGTATAGTATGAGAGACCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAG 1200 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 GACTGATCCTTTCCGTGTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGA 1260 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AAGCTCGACTGCTTTGAGTTTCCTTGCTCACAGAGTATTTTTGTCAGATAAATATCGCCC 1320 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AGAATCTTGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATGAAAAATCAGT 1380 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TCTGTACTTTCAAAGAGCGCTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACTCTTAT 1440 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 GGGACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGC 1500 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TGTTGATATAAATCCCAGAGATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATGAGAT 1560 consensus_12764#1 ----------------------------TCCCCANCAGNCGAGAAAAAAGGGAGAACGTT 32 consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 GATGGGAATGCCGTTTTATGCAGTTTATTACTTCCGTAAGTCATCATACCTACAACCTAA 1620 consensus_12764#1 GGCACCACCAGAGGAGGCGGCCGCACAAAGAACANGTGACTCCCCCGGGCAGACGAAATC 92 consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TGATGCCCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGTGATCAACTCCAGATGAT 1680 consensus_12764#1 CGGCGCGAGGCCACGTGCCGAATCGGCACGAGGCTACATTCAGGCTCAAATAGCTACTGT 152 consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TGAAGAAGCCATCAAGTGCTATGAGAGATCTGCAAATAATAATGACACCGAAGGAATAGC 1740 consensus_12764#1 GCAGTATAGTATGAGAGATCTGGATGAAGCTGACATGATTTTTGAAGAACTCCTTAGGAC 212 consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 ACTTCATCAGCTAGCAAAGTTACATGGTATGCTTGGACAATCAGAGGAGGCAGCATTTTA 1800 consensus_12764#1 TGATCCTTTTCGTGTGGATTCTATGGACGTTTACTCAAATTTATTGTATGCAAAAGAAAG 272 consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTACAAGAAGGATCTAGAGAGAATGGAAGTTGAGGAAAGGCAGGGCCAGAATTTTGTTGA 1860 consensus_12764#1 CTCGACTGCTTTAAGTTTCCTTGCTCACAGAGTATTTTTGACAGATAAATATCGCCCAGA 332 consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------NGGCAGGTNTGAGGAGGCAGAGCA 24 consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 AGCTCTGCTTTTCCTTGCTAAGCATTGCAAGAGCATAGGCAGGTTTGAGGAGGCAGAGCA 1920 consensus_12764#1 ATCATGCTGCATAATTGCAAATTACTACAGTTTGAAGGGGCAGCATGAAAA-TCAGTTTT 391 consensus_12764#2 -------------------------TTTTTTTTGAAGGGGCAGCATGAAAAATCAGTTCT 35 consensus_12764#3 CTATTGCACAAGGCTATNGGATTACACCGGTCCAGAAAGGGAGACTGCAAANAGTATNNT 84 consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTATTGCACAAGGCTCTTGGATTACACCGGTCCGGAAAGGGAGACTGCAAAAAGTATTTT 1980 consensus_12764#1 GTACTTTCAAAGAGCACTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACCCTTATGGG 451 consensus_12764#2 GTACTTTCAAAGAGCGCTGAAGCTTAATCGAAAGTATCTTTCAGCTTGGACTCTTATGGG 95 consensus_12764#3 GCAAGGGANAAAAAGATCACAATCGGTACTTCCGTTGATGGATATCGACCATTTNGCAAT 144 consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 GCAAGGGCTAAAAAGAGCACAATCGGTACTTCCGTTGATGGATATCGACCATTTTGCAAT 2040 consensus_12764#1 ACATGAGTTTGTAGAGCTATAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGT 511 consensus_12764#2 ACATGAGTTTGTTGAGCTAAAAAATACACCTGCTGCGATTGATGCCTACAGGAGAGCTGT 155 consensus_12764#3 GTAAATTGGACTTGCAGATAAGTTATTTAGTTGAAGAANTAAGGTGTTAAGCGGCAGATG 204 consensus_12764#4 ----TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56 consensus_12764#0 GTAAATTTGACTTGCAGATAAGTTATTTAGTTGGA-AACTAAGGTGTTAAGTG--AGATG 2097 consensus_12764#1 TGATATAAATCCCAGATATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATG--AAATG 569 consensus_12764#2 TGATATAAATCCCAGAGATTACCGTGCTTGGTATGGTCTTGGTCAGATCTATG--AGATG 213 * * * * * * * consensus_12764#3 TACAAGAGAAAACTACCCCTTGCATATTCTTTTCTCCATTTTTTG-CATGCATCGAGGAA 263 consensus_12764#4 TACAAGAGAAAACTACCCCTTGCGNANTCTTTTCNCCATTTTT-G-CATGCATCGAGGAA 114 consensus_12764#0 TACAAGAGAAAACTACCCCTTGCGTATTCTTTTCTCCATTTTT-G-CATGCATCGAGGAA 2155 consensus_12764#1 ---ATGGGAATGCCGTCTTATGCCGTTTATTACTTCCGTAAATTGTCATACCTACCACCT 626 consensus_12764#2 ---ATGGGAATGCCGTTTTATGCAGTTTATTACTTCCGTAAGTCATCATACCTACAACCT 270 * * *** * *** * ** ** * * *** * * consensus_12764#3 AGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCAT---GAACAA-GGG 319 consensus_12764#4 AGCTACACATTGGTTTCAANAGAACTGCNATAATACAAAACAGTCANCATGAACAAAGGG 174 consensus_12764#0 AGCTACACATTGGTTTCAAGAGAACTGCTATAATACAGAACAGTCATCATGAACAAAGGG 2215 consensus_12764#1 ACTGATCCCCCGCTTTGGATTGCTATGGCTCAGTGCTTTGAAACCCAATCCACCCCTGAT 686 consensus_12764#2 AATGATGCCCGGCTTTGGAATGCTATGGCTCAGTGCTATGAAAGT-GATCAACTCCAGAT 329 * * * * *** * * ** * * * * * * consensus_12764#3 GATTGGTTAT-CACTCACACCACACCAAGCAAGGAAAAGAAATCTATC-AAGGCCACAGA 377 consensus_12764#4 GATTNGTTAN-CACNCACACCGNACNAGGCAAGGAAAAGAAATC---------------- 217 consensus_12764#0 GATTGGTTAT-CACTCACACCGCACCAGGCAAGGAAAAGAAATCTATCTAAGGCCACACA 2274 consensus_12764#1 AATGGAAAAA-CCTTCCGTTCCTATTAAATATCGGC--ANNTT----------------- 726 consensus_12764#2 GATTGAAGAAGCCATCAAGTGCTATGAGAGATCTGATGAAACTGGTACTTTGCGTATCTC 389 ** * * * * * * * consensus_12764#3 CTGGCCCTGTTCTTTCTCTAAT-AAAAGTTGGATAAACTTTTGGATACTCGTGGCACACT 436 consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTGACCCACCTGATGAAACTG--GTACTTTGCGTATCTCCAGTACCAGTAGAGCAGCCAC 2332 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 CAGTACCAGTAGAGCAGCCACTTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCT 449 consensus_12764#3 TTTCAAGCTACTAAACGGTGTGTTTTGTACGAAAACTTTCTATATAAAAGTTGTTCTAAA 496 consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TTCCGAGCTTCATAATGTAATCCTTATTGTTTGTATCCTTGCCAGAAAACTCCATATTGC 2392 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 TGCCAGAAAACTCCATATTGCTGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAG 509 consensus_12764#3 ATATCAGATTAATCCAAAAAAAA------------------------------------- 519 consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TGGAGATGTTGACCTTGTGTGCATGATGATCTCTTCCAGTTGCTGAAGCTTGGTAATTAG 2452 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 TTGCTGAAGCTTGGTAATTAGTAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCAT 569 consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TAACACTAATCGCCGGCATGGGGCAAAAATGAGCGTCATCGGGATGATGAAGATCGCTAG 2512 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 CGGGATGATGAAGATCGCTAGCTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTC 629 consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTCAAGTATCGGCATTGCTGCTTGCTTTCTGCTAGGTTCTGTTTCTATGGCTTTTCTTCA 2572 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 TGTTTCTA---------------------------------------------------- 637 consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 CTAGATTGCTTTGGTCTGTGTTGCACTCAAAGTTCCATGGAGTTGCTTGCATATATAAGC 2632 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 ------------------------------------------------------------ consensus_12764#4 ------------------------------------------------------------ consensus_12764#0 TTCTTGGAAGACTTGCCTTGTCTGGATTCCAGTTCTCATATTCTTGCTTGTTAAAATAAT 2692 consensus_12764#1 ------------------------------------------------------------ consensus_12764#2 ------------------------------------------------------------ consensus_12764#3 --------- consensus_12764#4 --------- consensus_12764#0 TGTTGATGC 2701 consensus_12764#1 --------- consensus_12764#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||