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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 777 fasta sequence
[TCCCCGCCGGCGACTGCGAAACAACCCGCCGCCGCCGTTGCGCGCCGTCCGGTCGCATCCCCTGGCCTGGCCGTCGCCGGCCCGCCCGCGGCGCACTCCTCCATGGCCGCCAAGTGGGCGCAGAAGACAATCGTCATCCCCGCCCAGCGCCGGGGATGCCACCTCATCACCCCCAAGATT-CTGAGGGAGATTGAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTGTTCTTGCAGCACACAAGCGCTTCCCTAACCATCAATGAGAACTATGACTCCGATGTACAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACTCTAGAAGGACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACGATCCCTATAACTGATGGGCATCTCAATATGGGCACTTGGCAGGGTATATGGCTCTGTGAACATCGTGACAATGCTTCCTCCCGGAAAATTGTGATCACTCTCAATGGGGTCTAGATGAAGGTCTTCAAAGGCTGGGATGCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAGCACGGGCATGTAAAATCATGACTCCTGCCGTATACTGAATTGTTGTTCTAAATATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTACTGTTTCCTGTGTGATGTTTGACATGCTATGTTATCTTACAAACTTGTGAATTTTATGGCAGTGATGCTTAATGCTTTCTAGATCAAAAA]
[+] EMBL C27761 [TCCCCGCCGGCGACTGCAAAACAACCCGCCGCCGCCGTTGCGCGCCGTCCGGTCGCATCCCCTGGCCTGGCCGTCGCCGGCCNGCCCGCGG GCACTCCTCCATGGCCGCCAAGTGGGCGCAGAAGACAATCGTAATCCCCGCCCAGCGCCGGGNATGCCACCTNATCACCCCCAAGATT CTAAGGGAGATTNAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTTTTCTTGCAGCACACAAGCGCTTCCCTAACCATCAATGAGAACTATGACTCCNATGTACAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACTCTAGAAGGACCTGATGACATGCCAG ACATATTAAATCATCAATGTTTGG TGTTGCCTNACGAT CCTATAACTAATGGG AT TCAATATG ]
[+] EMBL AU174247 [ GCCGGCGACTGCGAAACAACCCGCCGCCGCCGTTGCGCGCCGTCCGGTCGCATCCCCTGGCCTGGCCGTCGCCGGCCCGCCCGCGGCGCACTCCTCCATGGCCGCCAAGTGGGCGCAGAAGACAATCGTCATCCCCGCCCAGCGCCGGGGATGCCACCTCATCACCCCCAAGATT CTGAGGGAGATTGAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTGTTCTTGCAGCACACAAGCGCTTCCCTAACCATCAATGAGAACTATGACTCCGATGTACAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACTCTAGAAGGACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACGATCCCTATAACTGATG ]
[+] EMBL AK069039 [ GAAACAACCCGCCGCCGCCGTTGCGCGCCGTCCGGTCGCATCCCCTGGCCTGGCCGTCGCCGGCCCGCCCGCGGCGCACTCCTCCATGGCCGCCAAGTGGGCGCAGAAGACAATCGTCATCCCCGCCCAGCGCCGGGGATGCCACCTCATCACCCCCAAGATT CTGAGGGAGATTGAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTGTTCTTGCAGCACACAAGCGCTTCCCTAACCATCAATGAGAACTATGACTCCGATGTACAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACTCTAGAAGGACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACGATCCCTATAACTGATGGGCATCTCAATATGGGCACTTGGCAGGGTATATGGCTCTGTGAACATCGTGACAATGCTTCCTCCCGGAAAATTGTGATCACTCTCAATGGGGTCTAGATGAAGGTCTTCAAAGGCTGGGATGCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAGCACGGGCATGTAAAATCATGACTCCTGCCGTATACTGAATTGTTGTTCTAAATGTCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTACTGTTTCCTGTGTGATGTTTGACATGCTATGTTATCTTACAAACTTGTGAATTTTATGGCAGTGATGCTTAATGC ]
[+] EMBL AU101941 [ aACCCCCAAGATTCCTGAGGGAGATTGAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTGTTCTTGCAGCACACAAGCGCTTCCCTNNCCATCAATGAGNACTATGACTCCGATGTACAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACTCTAGAAGGACCTGATGACATGCCAGCACATATTAAATCATCNATGTTTGGTTGTGCCCTGACGATCCCTATAACTGATGGGCATCNCAATATGGGCNCTTGGCAGGGTATATGGCTCTGTGAACATCGTGACAATGCTTCCTCCCGGAAAATTGTGATCACTCTCAATGGGGTCTNGATGAAGGTCTTCAAAGGCTGGGATGCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAGCACGGGCATGTAAAATCATGACTCCTGCCGTATACTGAATTGTTGTTCTAAATATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTACTGTTTCCTGTGTGATGTTTGACATGCTATGTTATCTTACAAACTTGTGAATTTTATGGCAGTGATGCTTAATGCTTTCTAGATCAAAAA]
[+] EMBL AK058222 [ CAAGCTGACACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACTCTAGAAGGACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACGATCCCTATAACTGATGGGCATCTCAATATGGGCACTTGGCAGGGTATATGGCTCTGTGAACATCGTGACAATGCTTCCTCCCGGAAAATTGTGATCACTCTCAATGGGGTCTAGATGAAGGTCTTCAAAGGCTGGGATGCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAGCACGGGCATGTAAAATCATGACTCCTGCCGTATACTGAATTGTTGTTCTAAATATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTACTGTTTCCTGTGTGATGTTTGACATGCTATGTTATCTTACAAACTTGTGAATTTTATGGCAGTGA ]
consensusID : consensus_12776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 773 fasta sequence
[CCCGNCGACGCTCGTCGCAAGTCACCACACACACCCTCGCCG-CGCCGCCGCTCAATTCAGTGATGCAGGCGGCAGCACCCGCGTGGGCTCCGCCCATCGTCTCCTCGGCTTCCGCCGTCTTCGCGCGGCCCCGCCGTGGCGCGCGCGCCGGCGCCGGCGCCGTCCGGTGCGAGCTCGCCGCCTCCGCGCCATCGTCGGCCGCCGGCTCGTTGGCCCCACGCTGGGCCCAGAGGACCGTCGTCATCCCGCCGCAGCGCCGCGGCTGCCACCTCATCACCCCCAAGATTGTGAACGGGATAAGAGACGACCTCTCCGAGTTCAAGTGCGGCATGGCACATCTGTTCTTGCAGCACACCAGTGCTTCGTTGACTATCAATGAGAACTATGACTCCGATGTCCAGTTTGACACTGAAACATTTCTTAGTCGCATTGTCCCAGAGGGTCCATCTGCTCCATGGAGGCACACCATAGAAGGGCCAGACGACATGCCAGCACATATTAAATCGTCGATGTTTGGTTGTGCCCTGACGATTCCTATCACTGATGGGCGTCTCAACATGGGAACTTGGCAGGGTATATGGCTCTGTGAACATCGAGACTACGCTACTCCTCGCCAGATTGTGATTACTCTCAATGGGATCTAAAAGGTCCATGACAATAGATATTAATAGCTGTAAATGCAATATGACCATCTAGACATCTAGATCATATGCATTGAAACTGAAACTGAAACCTTTTCACTCATTTGTGATATGAATTACAGTGGTGAATAT]
[+] EMBL BE228869 [CCCGNCGACGNTCGTCGAAAGTCACCACACACAACCTCGACGACGCCGCCGCTCAATTCAATGATGCAGGCGGCAGCACCCGCGTGGGCTCCGCCCATCGTCTCCTCGGCTTCCGCCGTCTCCGCGCGGCCCCGCCGTGGCGCGCGCGCCGGCGCCGGCGCCGTCCGGTGCGANCTCGCCGTCTCCGCGCCGTCGTCGGCCGCCGGCTCGTTGGCCCCACGCTGGGCCCAGAAGANCGTCGTCATCCCGCCGCAGAACCGCGGCTGCCACCTCATCACCCCCAAGATTGTGAACGGGATAAGANACGANCTCTCCGANTTCAANTGCGGCATGGCACATCTGTTCTTGCAGCACACCANCGCTTCGTTGACTATCAATGANAACTATGACTCCGATGTCCAGTTTGANACTGAAACATTTCTTAATCGCATTGTCCCANAAGGTCCATCTGCTCCATGGAAGCACACCATANAANGGGCAGANGAAATGCCANCACATATTAAATCGTCCATGTT ]
[+] EMBL CA754254 [ CGCTCGTCGCAAGTCACCACACACACCCTCGCCG CGCCGCCGCTCAATTCAGTGATGCAGGCGGCAGCACCCGCGTGGGCTCCGCCCATCGTCTCCTCGGCTTCCGCCGTCTTCGCGCGGCCCCGCCGTGGCGCGCGCGCCGGCGCCGGCGCCGTCCGGTGCGAGCTCGCCGCCTCCGCGCCATCGTCGGCCGCCGGCTCGTTGGCCCCACGCTGGGCCCAGAGGACCGTCGTCATCCCGCCGCAGCGCCGCGGCTGCCACCTCATCACCCCCAAGATTGTGAACGGGATAAGAGACGACCTCTCCGAGTTCAAGTGCGGCATGGCACATCTGTTCTTGCAGCACACCAGTGCTTCGTTGACTATCAATGAGAACTATGACTCCGATGTCCAGTTTGACACTGAAACATTTCTTAGTCGCATTGTCCCAGAGGGTCCATCTGCTCCATGGAGGCACACCATAGAAGGGCCAGACGACATGCCAGCACATATTAAATCGTCGATGTTTGGTTGTGCCCTGACGATTCCTATCACTGATGGGCGTCTCAACATGGGAACTTGGCA GGTATATGGCTCTGTGTACATCGAGACTACGCTACTCCTCGCCAGAT ]
[+] EMBL BP184573 [ GCTCGTCGCAAGTCACCACACACACCCTCGCCG CGCCGCCGCTCAATTCAGTGATGCAGGCGGCAGCACCCGCGTGGGCTCCGCCCATCGTCTCCTCGGCTTCCGCCGTCTTCGCGCGGCCCCGCCGTGGCGCGCGCGCCGGCGCCGGCGCCGTCCGGTGCGAGCTCGCCGCCTCCGCGCCATCGTCGGCCGGCGGCTCGTTGGCCCCACGCTGGGCCCAGAGGACCGTCGTAATCCCGCCGCAGCGCCGCGGCTGCCACCTCATCACCCCCAAGATTGTGAACGGGATAAGAGACGACCTCTCCGAGTTCAAGTGCGGCATGGCACATCTGTTCTTGCAGCACACCAGTGCTTCGTTGACTATCAATGAGAACTATGACTCCGATGTCCAGTTTGACACTGAAACATTTCTTAGTCGCATTGTCCCAGAGGGTCCATCTGCTCCATGGAGGCACACCATAGAAGGGCCAGACGACATGCCAGC ]
[+] EMBL AK059450 [ ACCAGTGCTTCGTTGACTATCAATGAGAACTATGACTCCGATGTCCAGTTTGACACTGAAACATTTCTTAGTCGCATTGTCCCAGAGGGTCCATCTGCTCCATGGAGGCACACCATAGAAGGGCCAGACGACATGCCAGCACATATTAAATCGTCGATGTTTGGTTGTGCCCTGACGATTCCTATCACTGATGGGCGTCTCAACATGGGAACTTGGCAGGGTATATGGCTCTGTGAACATCGAGACTACGCTACTCCTCGCCAGATTGTGATTACTCTCAATGGGATCTAAAAGGTCCATGACAATAGATATTAATAGCTGTAAATGCAATATGACCATCTAGACATCTAGATCATATGCATTGAAACTGAAACTGAAACCTTTTCACTCATTTGTGATATGAATTACAGTGGTGAA ]
[+] EMBL CA764205 [ AGGGTATATGGCTCTGTGAACATCGAGACTACGCTACTCCTCGCCAGATTGTGATTACTCTCAATGGGATCTAAAAGGTCCATGACAATAGATATTAATAGCTGTAAATGCAATATGACCATCTAGACATCTAGATCATATGCATTGAAACTGAAACTGAAACCTTTTCACTCATTTGTGATATGAATTACAGTGGTGAATAT]
consensusID : consensus_12776#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[CATCGTGACAATGCTTCCTCCCGGAAAATTGTGATCACTCTCAATGGGGTCTAGATGAAGGTCTTCAAAGCTGGGATCCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAGCACGGGCATGTAAAATCATGACTCCTCCGTATACTGAATTGTTGTTCTAAATATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTACTGTTTCCTGTGTGATGTTGACATGCTATGTTATCTTACAACTTGTGAATTAAAAAAAAAA]
[+] EMBL BI797932 [CATCGTGACAATGCTTCCTCCCGGAAAATTGTGATCACTCTCAATGGGGTCTAGATGAAGGTCTTCAAAGCTGGGATCCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAGCACGGGCATGTAAAATCATGACTCCTCCGTATACTGAATTGTTGTTCTAAATATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTACTGTTTCCTGTGTGATGTTGACATGCTATGTTATCTTACAACTTGTGAATTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12776#0 TCCCCGCCGGCGACTGCGAAACAACCCGCCGCCGCCGTTGCGCGCCGTCCGGTCGCATCC 60
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 --CCCGNCGACGCTCGTCGCAAGTCACCACACACACCCTCGCCGCGCCGCCGCTCAATTC 58
consensus_12776#0 CCTGGCCTGGCCGTCGCCGGCCCGCCCGCGGCGCACTCCTCCATGGCCGCCAAGTGGGCG 120
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 AGTGATGCAGGCGGCAGCACCCGCGTGGGCTCCGCCCATCGTCTCCTCGGCTTCCGCCGT 118
consensus_12776#0 CAGAAGACAATCGTCATCCCCGCCCAGCGCCGGGGATGCCACCTCATCACCCCCAAGATT 180
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 CTTCGCGCGGCCCCGCCGTGGCGCGCGCGCCGGCGCCGGCGCCGTCCGGTGCGAGCTCGC 178
consensus_12776#0 CTGAGGGAGATTGAGGGCGACCTGTCCGGGTTCAAGTGCGGCTTGGCGCATCTGTTCTTG 240
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 CGCCTCCGCGCCATCGTCGGCCGCCGGCTCGTTGGCCCCACGCTGGGCCCAGAGGACCGT 238
consensus_12776#0 CAGCACACAAGCGCTTCCCTAACCATCAATGAGAACTATGACTCCGATGTACAAGCTGAC 300
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 CGTCATCCCGCCGCAGCGCCGCGGCTGCCACCTCATCACCCCCAAGATTGTGAACGGGAT 298
consensus_12776#0 ACCGAAACTTTCCTTAACCGAATTGTACCAGAGGGCCGATCTGCTCCTTGGAAGCACACT 360
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 AAGAGACGACCTCTCCGAGTTCAAGTGCGGCATGGCACATCTGTTCTTGCAGCACACCAG 358
consensus_12776#0 CTAGAAGGACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTG 420
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 TGCTTCGTTGACTATCAATGAGAACTATGACTCCGATGTCCAGTTTGACACTGAAACATT 418
consensus_12776#0 ACGATCCCTATAACTGATGGGCATCTCAATATGGGCACTTGGCAGGGTATATGGCTCTGT 480
consensus_12776#2 ------------------------------------------------------------
consensus_12776#1 TCTTAGTCGCATTGTCCCAGAGGGTCCATCTGCTCCATGGAGGCACACCATAGAAGGGCC 478
consensus_12776#0 GAACATCGTGACAATGCTTCCTC--CCGGAAAATTGTGATCACTCTC-AATGGGGTCTA- 536
consensus_12776#2 ---CATCGTGACAATGCTTCCTC--CCGGAAAATTGTGATCACTCTC-AATGGGGTCTA- 53
consensus_12776#1 AGACGACATGCCAGCACATATTAAATCGTCGATGTTTGGTTGTGCCCTGACGATTCCTAT 538
* * ** ** * * * ** * * ** * * * * * ***
consensus_12776#0 -GATGAAGGTCTTCAAAGGCTGGGATGCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAG 595
consensus_12776#2 -GATGAAGGTCTTCAAAG-CTGGGATCCAGGAAAGAGAGCGAATGTTGGACAGTTCGAAG 111
consensus_12776#1 CACTGATGGGCGTCTCAACATGGGAACTTGGCAGGGTATATGGCTCTGTGAACATCGAGA 598
*** ** * ** * ***** ** * * * ** * ****
consensus_12776#0 CACGGGCAT-----GTAAAATCATGACTCCTGCC---GTATACTGAATTGTTGTTCTAAA 647
consensus_12776#2 CACGGGCAT-----GTAAAATCATGACTCCT-CC---GTATACTGAATTGTTGTTCTAAA 162
consensus_12776#1 CTACGCTACTCCTCGCCAGATTGTGATTACTCTCAATGGGATCTAAAAGGTCCATGACAA 658
* * * * * ** *** * ** * * ** ** ** * **
consensus_12776#0 TATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTA--CTGTTTCCTGTG---TGA 702
consensus_12776#2 TATCGATTAATGCTGGGGAGCTCTATGAAATTTACTGGTA--CTGTTTCCTGTG---TGA 217
consensus_12776#1 TAGATATTAATAGCTGTAAATGCAATATGACCATCTAGACATCTAGATCATATGCATTGA 718
** ****** * * * ** * ** * ** ** * ** ***
consensus_12776#0 TGTTTGACATGCTATGTTATCTTACAAACTTG---TGAATTTTATGGCAGTGATGCTTAA 759
consensus_12776#2 TGTT-GACATGCTATGTTATCTTACAA-CTTG---TGAATTAAAAAAAAAA--------- 263
consensus_12776#1 AACTGAAACTGAAACCTTTTCACTCATTTGTGATATGAATTACAGTGGTGAATAT----- 773
* * ** * ** ** ** ** ****** *
consensus_12776#0 TGCTTTCTAGATCAAAAA 777
consensus_12776#2 ------------------
consensus_12776#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||