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Oryza sativa
cluster # 12778 cluster # 12778       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12778#0 length = 1797 sequences # 10  
consensus_12778#1 length = 464 sequences # 1  

consensusID : consensus_12778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1797
fasta sequence
                              [GTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCGCAGCCTCCAAATTCTCCAAAACCCTCGCGTTTTCCCGCGGCTTCGCTTCCGGGGAGAGGAGATTTTCAAAAATAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACTCCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCGTCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGCTGGTGATGCCGTCGAAGATGAAGTTGGAGGT-AGAGGACGGTCAGA-TGGGCGACGGCGCGGTGGTGGAGGAGG-TGGTGCAGCCGGTGGTGCGTGGCTTCGTCAAGGACTGGGACGCCATGGAGGACCTGCTCAACTACGTCCTGTACAGCAACATTGGGTGGGAGATTGGGGATGAGGGCCAGATCCTCTTCACAGAGCCGCTCTTCACACCCAAGGCACTTCGGGAGCAACTGGCGCAACTTATGTTCGAAAAATTCAATGTTTCAGGCTTTTATGACTCTGAGCAGGCTGTATTGTCACTTTATGCAGTTGGACGCATTTCGGGCTGTACAGTGGACATTGGGCATGGGAAAATCGATATTGCTCCAGTTTGTGAAGGTGCTGTTCAGCACATAGCATCAAAGAGATTTGATATTGGAGGAACTGACTTGACAAACCTATTTGCGGAAGAACTCAAAAAATCTAACTCATCGGTAAACATTGATATTTCTGATGTTGAGCGGCTGAAAGAGCAGTATGCATGCTGTGCAGAAGATCAAATGGCCTTTGAAGCTATAGGAAGCTCATGCCGACCAGAAAGGCACACACTTCCAGATGGGCAGGTTATAACAATTGAAAAAGAACGGTACATTGTTGGTGAAGCTTTATTTCAACCCCACATTTTGGGCTTAGAAGATTATGGAATTGTTCATCAGCTGGTTACAAGCGTCTCGAATGTCACACCAGAGTACCATCGTCAGCTGCTTGAAAACACTATGTTATGTGGTGGCACTGCATCAATGACTGGTTTTGAAGACAGGTTCCAGAGAGAAGCAAATCTGTCTGCTTCAGCAATCTACCCATCTCTTGTAAAGCCTCCAGAATATATGCCCGAGAACCTAGCTAGGTACTCGGCCTGGCTGGGCGGTGCAATATTGGCCAAGGTCGTTTTCCCGCAAAACCAGCACGTCACCAAGGGAGACTACGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAG-CGGTATTGTTCTTCCA-AGTTGATTGGCAATTTGAGCTGTTCTATGAGTAAAAAAAAAAA]

[+] EMBL AK069426             [GTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCGCAGCCTCCAAATTCTCCAAAACCCTCGCGTTTTCCCGCGGCTTCGCGTCCGGGGAGAGGAGATTTTCAAAAATAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACTCCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCGTCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGCTGGTGATGCCGTCGAAGATGAAGTTGGAGGT AGAGGACGGTCAGA TGGGCGACGGCGCGGTGGTGGAGGAGG TGGTGCAGCCGGTGGTGCGTGGCTTCGTCAAGGACTGGGACGCCATGGAGGACCTGCTCAACTACGTCCTGTACAGCAACATTGGGTGGGAGATTGGGGATGAGGGCCAGATCCTCTTCACAGAGCCGCTCTTCACACCCAAGGCACTTCGGGAGCAACTGGCGCAACTTATGTTCGAAAAATTCAATGTTTCAGGCTTTTATGACTCTGAGCAGGCTGTATTGTCACTTTATGCAGTTGGACGCATTTCGGGCTGTACAGTGGACATTGGGCATGGGAAAATCGATATTGCTCCAGTTTGTGAAGGTGCTGTTCAGCACATAGCATCAAAGAGATTTGATATTGGAGGAACTGACTTGACAAACCTATTTGCGGAAGAACTCAAAAAATCTAACTCATCGGTAAACATTGATATTTCTGATGTTGAGCGGCTGAAAGAGCAGTATGCATGCTGTGCAGAAGATCAAATGGCCTTTGAAGCTATAGGAAGCTCATGCCGACCAGAAAGGCACACACTTCCAGATGGGCAGGTTATAACAATTGAAAAAGAACGGTACATTGTTGGTGAAGCTTTATTTCAACCCCACATTTTGGGCTTAGAAGATTATGGAATTGTTCATCAGCTGGTTACAAGCGTCTCGAATGTCACACCAGAGTACCATCGTCAGCTGCTTGAAAACACTATGTTATGTGGTGGCACTGCATCAATGACTGGTTTTGAAGACAGGTTCCAGAGAGAAGCAAATCTGTCTGCTTCAGCAATCTACCCATCTCTTGTAAAGCCTCCAGAATATATGCCCGAGAACCTAGCTAGGTACTCGGCCTGGCTGGGCGGTGCAATATTGGCCAAGGTCGTTTTCCCGCAAAACCAGCACGTCACCAAGGGAGACTACGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAG CGGTATTGTTCTTCCA AGTTGATTGGCAATTTGAGCTGTTCTAT               ]
[+] EMBL AU075462             [                    CTTCTTCTTCTTCTTCTTCTTCCTCGCGCA NCTCCAAATTCTCCAAAACCCTCGCGTTTTCCCGCGGCTTCGCTTCCGGGGAGAGGAGATTTTCAAAAATAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACNCCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGACGCGGGCGCCATGGAGGCGGNGGTCGTCGACGCGGGGTCGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF329579             [                                                       CAAATTCTCCAAAACCCTCGCGTTTTCCCGCGGCTTCGCTTCCGGGGAGAGGAGATTTTCAAAAATAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACTCCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCGTCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGCTGGTGATGCCGTCGAAGATGAAGTTGGAGGT AGAGGACGGTCAGA TGGGCGACGGCGCGGTGGTGGAGGAGG TGGTGCAGCCGGTGGTGCGTGGCTTCGTCAAGGACTGGGACGCCATGGAGGACCTGCTCAACTACGTCCTGTACAGCAACATTGGGTGGGAGATTGGGGATGAGGGCCAGATCCTCTTCACAGAGCCGCTCTTCACACCCAAGGCACTTCGGGAGCAACTGGCGCAACTTATGTTCGAAAAATTCAATGTTTCAGGCTTTTATGACTCTGAGCAGGCTGTATTGTCACTTTATGCAGTTGGACGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU108133             [                                                               CCAAAACCCTCGCGTTTTCCCGCGGCTTCGCTTCCGGGGAGAGGAGATTTTCAAAAATAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACTCCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCGTCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGCTGGTGATGCCGTCGAAGATGAAGTTGGAGGT AGAGGACGGTCAGA TGGGCGACGGCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR3366A             [                                                                                                    GGAGAGGAGATTTTCAAAAATAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACTCCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCGTCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGCTGGTGATGCCGTCGAAGATGAAGTTGGAGGTAAGAGGACGGTCAGATTGGGCGNCGGCGCGGTGGTTGAAGAGGTTGGTTCAagc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB659176             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTACAAGCGTCTCGAATGTCACACCAGAGTACCATCGTCAGCTGCTTGAAAACACTATGTTATGTGGTGGCACTGCATCAATGACTGGTTTTGAAGACAGGTTCCAGAGAGAAGCAAATCTGTCTGCTTCAGCAATCTGCCCATCTCTTGTAAAGCCTCCAGAATATATGCCCGAGAACCTAGCTAGGTACTCGGCCTGGCTGGGCGGTGCAATATTGGCCAAGGTCGTTTTCCCGCAAAACCAGCACGTCACCAAGGGAGACTACGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGNCGGTATTGTTCTTCCA AGTTGATTGGCAATTTG                          ]
[-] EMBL AW069918             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCGAGGTCGTTTTCCCGCAAAACCAGCACGTCACCAAGGGAGACTACGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAA                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF329580             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAG CGGTATTGTTCTTCCA AGTTGATTGGCAATTTGAGCTGTTCTATGAGTAAAAAA     ]
[+] EMBL AU031080             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TAACATTGGCATCTATTTATTACAAGTTNTAGAGGATTGTNCCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGNGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAG CGGTATTGTTCTTCCA AGTTGATTGGCAATTTGAGCTGTTCTATGNGTAAAAAAAAAAA]
[+] EMBL BI806066             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCCATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTACCCAACTACCAGAAAACCAAGCTTAGCTAGAAC CGGTATTGTTCTTCCACAGTTGATTGCCCATTTGACCTGTTCTATGAGTAAttc      ]


>consensus_12778#0 GTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCGCAGCCTCCAAAT TCTCCAAAACCCTCGCGTTTTCCCGCGGCTTCGCTTCCGGGGAGAGGAGATTTTCAAAAA TAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACT CCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCG TCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGC TGGTGATGCCGTCGAAGATGAAGTTGGAGGTAGAGGACGGTCAGATGGGCGACGGCGCGG TGGTGGAGGAGGTGGTGCAGCCGGTGGTGCGTGGCTTCGTCAAGGACTGGGACGCCATGG AGGACCTGCTCAACTACGTCCTGTACAGCAACATTGGGTGGGAGATTGGGGATGAGGGCC AGATCCTCTTCACAGAGCCGCTCTTCACACCCAAGGCACTTCGGGAGCAACTGGCGCAAC TTATGTTCGAAAAATTCAATGTTTCAGGCTTTTATGACTCTGAGCAGGCTGTATTGTCAC TTTATGCAGTTGGACGCATTTCGGGCTGTACAGTGGACATTGGGCATGGGAAAATCGATA TTGCTCCAGTTTGTGAAGGTGCTGTTCAGCACATAGCATCAAAGAGATTTGATATTGGAG GAACTGACTTGACAAACCTATTTGCGGAAGAACTCAAAAAATCTAACTCATCGGTAAACA TTGATATTTCTGATGTTGAGCGGCTGAAAGAGCAGTATGCATGCTGTGCAGAAGATCAAA TGGCCTTTGAAGCTATAGGAAGCTCATGCCGACCAGAAAGGCACACACTTCCAGATGGGC AGGTTATAACAATTGAAAAAGAACGGTACATTGTTGGTGAAGCTTTATTTCAACCCCACA TTTTGGGCTTAGAAGATTATGGAATTGTTCATCAGCTGGTTACAAGCGTCTCGAATGTCA CACCAGAGTACCATCGTCAGCTGCTTGAAAACACTATGTTATGTGGTGGCACTGCATCAA TGACTGGTTTTGAAGACAGGTTCCAGAGAGAAGCAAATCTGTCTGCTTCAGCAATCTACC CATCTCTTGTAAAGCCTCCAGAATATATGCCCGAGAACCTAGCTAGGTACTCGGCCTGGC TGGGCGGTGCAATATTGGCCAAGGTCGTTTTCCCGCAAAACCAGCACGTCACCAAGGGAG ACTACGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCC TTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATG TAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTT CTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTT TGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTAT TACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCG TTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAA TTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGCG GTATTGTTCTTCCAAGTTGATTGGCAATTTGAGCTGTTCTATGAGTAAAAAAAAAAA



consensusID : consensus_12778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence
                              [AATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGCGGTATTGTTCTTCCAAAAAAAAAAAAAAAAA]

[+] EMBL AU108132             [AATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGCGGTATTGTTCTTCCAAAAAAAAAAAAAAAAA]


>consensus_12778#1 AATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTAC AGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCT CTGAAGCTGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCA GTTTAGATGGTGTTTGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACAT TGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATT CGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCC AATTGCTCTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAG CTTAGCTAGAAGCGGTATTGTTCTTCCAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12778#0      GTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCGCAGCCTCCAAAT 60
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TCTCCAAAACCCTCGCGTTTTCCCGCGGCTTCGCTTCCGGGGAGAGGAGATTTTCAAAAA 120
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TAAATTCCTCATCCACATCCTCCTCTTCCCCTAGCTCCTAGGCAGGGTCTCGTCTCGACT 180
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      CCGAATCTTAGGGTTTCTCCTCCCCGCTCCCCGCCGCGGGCGCCATGGAGGCGGTGGTCG 240
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TCGACGCGGGGTCGAAGCTGCTCAAGGCCGGCATCGCCTTGCCCGACCAGTCCCCATCGC 300
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TGGTGATGCCGTCGAAGATGAAGTTGGAGGTAGAGGACGGTCAGATGGGCGACGGCGCGG 360
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TGGTGGAGGAGGTGGTGCAGCCGGTGGTGCGTGGCTTCGTCAAGGACTGGGACGCCATGG 420
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      AGGACCTGCTCAACTACGTCCTGTACAGCAACATTGGGTGGGAGATTGGGGATGAGGGCC 480
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      AGATCCTCTTCACAGAGCCGCTCTTCACACCCAAGGCACTTCGGGAGCAACTGGCGCAAC 540
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TTATGTTCGAAAAATTCAATGTTTCAGGCTTTTATGACTCTGAGCAGGCTGTATTGTCAC 600
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TTTATGCAGTTGGACGCATTTCGGGCTGTACAGTGGACATTGGGCATGGGAAAATCGATA 660
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TTGCTCCAGTTTGTGAAGGTGCTGTTCAGCACATAGCATCAAAGAGATTTGATATTGGAG 720
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      GAACTGACTTGACAAACCTATTTGCGGAAGAACTCAAAAAATCTAACTCATCGGTAAACA 780
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TTGATATTTCTGATGTTGAGCGGCTGAAAGAGCAGTATGCATGCTGTGCAGAAGATCAAA 840
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TGGCCTTTGAAGCTATAGGAAGCTCATGCCGACCAGAAAGGCACACACTTCCAGATGGGC 900
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      AGGTTATAACAATTGAAAAAGAACGGTACATTGTTGGTGAAGCTTTATTTCAACCCCACA 960
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TTTTGGGCTTAGAAGATTATGGAATTGTTCATCAGCTGGTTACAAGCGTCTCGAATGTCA 1020
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      CACCAGAGTACCATCGTCAGCTGCTTGAAAACACTATGTTATGTGGTGGCACTGCATCAA 1080
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TGACTGGTTTTGAAGACAGGTTCCAGAGAGAAGCAAATCTGTCTGCTTCAGCAATCTACC 1140
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      CATCTCTTGTAAAGCCTCCAGAATATATGCCCGAGAACCTAGCTAGGTACTCGGCCTGGC 1200
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      TGGGCGGTGCAATATTGGCCAAGGTCGTTTTCCCGCAAAACCAGCACGTCACCAAGGGAG 1260
consensus_12778#1      ------------------------------------------------------------
                                                                                   

consensus_12778#0      ACTACGACGAGACTGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCC 1320
consensus_12778#1      ----------------------------------------------AATAACAGCTCGCC 14
                                                                     **************

consensus_12778#0      TTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATG 1380
consensus_12778#1      TTGGAGGCATGAACACCTTGCACGGGGCGTGGATGCACGAATCTACAGTTTACTGGCATG 74
                       ************************************************************

consensus_12778#0      TAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTT 1440
consensus_12778#1      TAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGCTGCGGTT 134
                       ************************************************************

consensus_12778#0      CTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTT 1500
consensus_12778#1      CTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTT 194
                       ************************************************************

consensus_12778#0      TGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTAT 1560
consensus_12778#1      TGTTACACTTGTTACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTAT 254
                       ************************************************************

consensus_12778#0      TACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCG 1620
consensus_12778#1      TACAAGTTGTAGAGGATTGTACCTGGCAACGCTCGTAGGCTGCATTCGTTTGATTGTCCG 314
                       ************************************************************

consensus_12778#0      TTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAA 1680
consensus_12778#1      TTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCTCTCTGAA 374
                       ************************************************************

consensus_12778#0      TTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGCG 1740
consensus_12778#1      TTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGCG 434
                       ************************************************************

consensus_12778#0      GTATTGTTCTTCCAAGTTGATTGGCAATTTGAGCTGTTCTATGAGTAAAAAAAAAAA 1797
consensus_12778#1      GTATTGTTCTTCCAAAAAAAAAAAAAAAAA--------------------------- 464
                       ***************    *     **                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)