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Oryza sativa
cluster # 12789 cluster # 12789       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12789#0 length = 1416 sequences # 9  
consensus_12789#1 length = 682 sequences # 1  
consensus_12789#2 length = 292 sequences # 1  

consensusID : consensus_12789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1416
fasta sequence
                              [CCAAACTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT-GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG-AATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTCCAATGTTGACAGT-TTTTAGGAAAACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGAGCGATCTAGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTGACTGCTTTCAAATGCTTGTGAGAGTGTTAAAAAAAAAAAAAAAGGA]

[+] EMBL CB618020             [CCAAACTCCTCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGGAGTTGAGGGAACAGCCATGGCTTCATTGATTCATATGCAGAAGATCTTAGCTAATCGAGCGCAACATTTCCCTAGCATGGAAAAAGCTATTGAATGGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB622656             [CCAAACTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATGAAATC AGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB618065             [CCACACTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGTGGGGCCACTCAGGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK105357             [           AAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG AATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTCCAATGTTGACAGT TTTTAGGAAAACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGAGCGATCTAGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTT                                               ]
[+] EMBL AU032388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTNTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG AATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATT ANAAATGGCAGCATTAGACGGAACGGACCTTGCGTGCCAATGTTGACAGTATTTTAGGAAAACGATGAGGCTntagct                                                                                                                                                                                                                                                 ]
[-] EMBL CB618021             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG AATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTCCAATGTTGACAGT TTTTAGGAAAACGATGAGGCTTTTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGAGCGATTTAGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTGACTGCTTTCAAATGCTTGT                           ]
[+] EMBL CA755698             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG AATCAAGGGAATGCTATACATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB622657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG AATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTCCAATGTTGACAGT TTTTAGGAAAACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGAGCGATCTAGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTGACTGCTTTCAAATGCTTGTGAGAGTGTTAAAAAAAAAAAAAAAGGA]
[+] EMBL CK085244             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAAGATCTTAGCAAATCTAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGT GGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATG AATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTC                                                                                                                                                                                                                                                                                          ]


>consensus_12789#0 CCAAACTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGC CGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGG GTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCG CCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGG AGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGG AGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAG CAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAA AATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAG CTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCA TGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTC TTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGA TCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCA AAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAAT ATGATGAATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACT GGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCC TATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAA AGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAG AATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTG AGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTCCAATG TTGACAGTTTTTAGGAAAACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCAC AGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGAGCGATCTAGGTTTAA CCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTG TGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTGACTGCTTTCA AATGCTTGTGAGAGTGTTAAAAAAAAAAAAAAAGGA



consensusID : consensus_12789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [TCCCAACCTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTGCGTTGCGCTTGCGCGTCCTGGGAGTAGAGGACCATTCTTTTAAAATTTTTCTCCCGGCCGGTGTGATCTTGTAAATAAATATATCATGTTCCCTTTTATGGTGTGGGTTTCCTTGTAGGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGGTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTAT]

[+] EMBL CB634510             [TCCCAACCTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTGCGTTGCGCTTGCGCGTCCTGGGAGTAGAGGACCATTCTTTTAAAATTTTTCTCCCGGCCGGTGTGATCTTGTAAATAAATATATCATGTTCCCTTTTATGGTGTGGGTTTCCTTGTAGGTTTTCAATGTGTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGGTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTAT]


>consensus_12789#1 TCCCAACCTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGAC GCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGA GGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCC CGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGA GGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTGCGTTGCGCTTGCGCGTCCTGGGA GTAGAGGACCATTCTTTTAAAATTTTTCTCCCGGCCGGTGTGATCTTGTAAATAAATATA TCATGTTCCCTTTTATGGTGTGGGTTTCCTTGTAGGTTTTCAATGTGTACATGGCCAGAT CGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTC TAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATG GAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCA TAGCTGGTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATA GCATGGGCGGTTCTGTGGCTAT



consensusID : consensus_12789#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence
                              [AACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGNGCGATCTNGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTCACTGCTTTCAAATGCTTGTGAGAGTGTTAGATTGTGAATGTGATGCACATACTCCAGAAAAATACAACGAAGCNAAAAA]

[+] EMBL AU032389             [AACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCACGNGCGATCTNGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTCACTGCTTTCAAATGCTTGTGAGAGTGTTAGATTGTGAATGTGATGCACATACTCCAGAAAAATACAACGAAGCNAAAAA]


>consensus_12789#2 AACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGC AAGAAGATTGGGGATATCATAGGCACGNGCGATCTNGGTTTAACCATTCTGTTGCCGCTC GCCTTGATGCATGTCATGAGTGATTTTTATATGACACGGCTTGTGAATTCCTTTCATGGC AGGTTGTGAGAGTGAATAAAATGGAGTAATTTCACTGCTTTCAAATGCTTGTGAGAGTGT TAGATTGTGAATGTGATGCACATACTCCAGAAAAATACAACGAAGCNAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12789#0      CCAAACTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGCTCGCCGCCTCCGACGC 60
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      CGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCCTCGCTGCAGGAGGAGG 120
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      GTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCCGTGCCGCCCCGCCCCG 180
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      CCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGG 240
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      AGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCAGATCGG 300
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      AGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAG 360
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      CAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAA 420
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      AATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAG 480
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      CTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCA 540
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      TGGGCGGTTCTGTGGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTC 600
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      TTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGA 660
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      TCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCA 720
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      AAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAAT 780
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      ATGATGAATCAAGGGAATGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATACT 840
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      ------------------------------------------------------------
                                                                                   

consensus_12789#0      GGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCC 900
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      --------------TCCCAACCTCCCCAAACTCTCCAAACCCGCCTCCTACCCATTTCGC 46
                                                                                   

consensus_12789#0      TATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAA 960
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      TCGCCGCCTCCGACGCCGCGGCCGCCGCCACCGCCACCCATGGAGCCCGCGCCGCTCGCC 106
                                                                                   

consensus_12789#0      AGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAG 1020
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      TCGCTGCAGGAGGAGGGTGAGGGGGAGCCCGGCGAGTCGCCGTCCTCCGCCGCCGCCGCC 166
                                                                                   

consensus_12789#0      AATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTG 1080
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      GTGCCGCCCCGCCCCGCCACGCACCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCG 226
                                                                                   

consensus_12789#0      AGATTCCTGGACTGATTAAAAAATGGCAGCATTAGACGGAACGGACCTTGCGTTCCAATG 1140
consensus_12789#2      ------------------------------------------------------------
consensus_12789#1      GCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTGCGTTGCGCT 286
                                                                                   

consensus_12789#0      TTGACAGTTTTTAGGAAAACGATGAGGCTTCTA-----TCTCCACCGGATTGCCATATTT 1195
consensus_12789#2      -----------------AACGATGAGGCTTCTA-----TCTCCACCGGATTGCCATATTT 38
consensus_12789#1      TGCGCGTCCTGGGAGTAGAGGACCATTCTTTTAAAATTTTTCTCCCGGCCGGTGTGATCT 346
                                         * **  *  *** **     * **  ****   *    ** *

consensus_12789#0      TCCACA-GGGTAGAAGGTGTTGCAAG--AAGATTGGGGATATCATAGGCACGAGCGATCT 1252
consensus_12789#2      TCCACA-GGGTAGAAGGTGTTGCAAG--AAGATTGGGGATATCATAGGCACGNGCGATCT 95
consensus_12789#1      TGTAAATAAATATATCATGTTCCCTTTTATGGTGTGGGTTTCCTTGTAGGTTTTCAATGT 406
                       *  * *    ** *   **** *     * * *  *** *  * *         * ** *

consensus_12789#0      AGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGAC 1312
consensus_12789#2      NGGTTTAACCATTCTGTTGCCGCTCGCCTTGATGCATGTCATGAGTGATTTTTATATGAC 155
consensus_12789#1      GTACATGGCCAGATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTAC----T 462
                            *  ***    *  *  **  * * ** *     *     ***     **      

consensus_12789#0      ACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTGAC 1372
consensus_12789#2      ACGGCTTGTGAATTCCTTTCATGGCAGGTTGTGAGAGTGAATAAAATGGAGTAATTTCAC 215
consensus_12789#1      CCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTA 522
                        ***  * *   ** ** *    *** ** **  **  *** *   * * **  ***   

consensus_12789#0      TG--CTTTCAAATGCTTGTGAGAGTGTT---AAAAAAAAAAAAAAAGGA----------- 1416
consensus_12789#2      TG--CTTTCAAATGCTTGTGAGAGTGTT---AGATTGTGAATGTGATGCACATACTCCAG 270
consensus_12789#1      TGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAA 582
                       **    * * *  ** **  * *        *       *     *              

consensus_12789#0      ------------------------------------------------------------
consensus_12789#2      AAAAATACAACGAAGCNAAAAA-------------------------------------- 292
consensus_12789#1      CTCTCAGCAGCGATGTCATAGCTGGTTTACGCACATTGTATGGAGATTCTCCACCAGCCA 642
                                                                                   

consensus_12789#0      ----------------------------------------
consensus_12789#2      ----------------------------------------
consensus_12789#1      TTATACTTGTTGGGCATAGCATGGGCGGTTCTGTGGCTAT 682
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)