These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 506 fasta sequence [CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAGTGTTGGTGACGGGGAGGAGATAGGGGGGAA-GTGAAGGAGATGATGGCCGACGCCGGCGTG-CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTG-TCCAAGGCGGTGGCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTA-CACAGT-GAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC-ATTTCCCATTGGCA-GTTTGGCACCCACCAAGCTCCTCCTTGTTCCCGGTTAGGAAC-AATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGC-AATCTATTAAAAAAAAAA] [+] EMBL BI812983 [CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAGTGTTGGTGACGGGGAGGAGATAGGGGGGAA GTGAAGGAGATGATGGCCGACGCCGGCGTG CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTG TCCAAGGCGGTGGCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTA CACAGTGGAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTT CCATTGGCA GTTTGGCA CCACCAAGCTCCTCCTTGTTCCCGGTTAGGAAC AATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGC AATCTATTAAAAAAAAAA] [+] EMBL BI812864 [ ggGGGGAGGAGATAGGGGGGAAGGTGAAGGAGATGATGGCCGACGCCGGCGTG CGGGAGAA GCGGCCAAGGTCGGCGAGGAGGTG TCCAAGGCGGT GCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCA TTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTA CA AGT GAAAGGAGGGAGTGTGATAAATAAAAGCA CTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTTCCCATTGGCA GTTTGGCACCCAaaaa ] [+] EMBL BQ906030 [ GCGTGCCGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTGTTCCAAGGCGGTGGCCGTCGGCGGCACGAGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACATATAAGTGTACCACAGT GAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCTTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCCCATTGGCACGTTTGGCACCACCCAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCCA AAAAAAAAA ] consensusID : consensus_12804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 503 fasta sequence [CCTATAGCAACTGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAATCCGGCCGCTGAGATA----GGGGAAGGTGAA-GAGATGATGGCCGACGCCGGC--GT-CGGGAGAA-GCGGCCAA-GGTCG-GCGAGGAGGTG-TCCAA-GGCGGTG--G-CGTCGGCGGCACGA-GCCACA-CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT-CCT-T-CAATGT-CACAT-AT-AAGT-GT-ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC-ATTTCC-ATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT-GTTGCAAATCTATTGTCTTGGATTCACCCCAAAAAAAAAA] [-] EMBL OS37981 [CCTATAGCAACTGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAATCCGGCCGCTGAGATA GGGGAAGGTGAA GAGATGAT GCCGACGCC GC GT CCGGAGAA GCGGCCAA GGTCG GCGAGGAGGTG CCAA GGCGGTG G CGTCGGCGGCACGA GCCACA CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTACAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCTAGTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ATAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCG ] [+] EMBL BQ906993 [ gggagTGAGATATGNGGGGGAAGGTGAAGGAGATGATGGCCGACGCCGGCGTGT CGGGAGAAGGCGGCCAATGGTCGNGCGAGGAGGTGTTCCAATGGCGGTGNNC CGTCGGCGGCACGATGCCACACCGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTTCCAATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT GTTGCAAATCTATTGTCTTGGATTCACCCCAAAAAAAAAA] [+] EMBL BQ907612 [ aatg GAGATGATGGCCGACGCCGGC GTGCGGGAGAA GGCGCCAA GGTCG GCGAGGAGGTG TCCAA GGCGGTG GCCGTCGGCGGCACGA GCCACA CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCC ATTGGCAGTTTGGCACCACC AAGCTCCTCCTTGTTCCCGGTTAGGAAC AATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT GTTGC AATCTATTGTCTTGGATTCACCCCAAAA ] [+] EMBL BQ906194 [ ATGATGGCCGACGCCGGC GTGCGGGAGAAGGCGGCCAA GGTCG GCGAGGAGGTG TCCAA GGCGGTG GCCGTCGGCGGCACGA GCCACA CGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAAGAAATATCTACTGCTACATAATTCCT CCT T CAATGT CACAT AT AAGT GT ACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCC ATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTCNTTGCAAATCTATTGTCTTGGATTCAaaaaa ] [+] EMBL BQ907755 [ tgaagtgtgCCTGCCTGTGCAATGTGCACATAATNAAGTGGTGACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTCTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCC ATTTCC ATTGGCAGTTTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGT GTTGCAAATCTATTGTCTTGGATTCACCCCAAAAA ] consensusID : consensus_12804#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [GCGACGTCGACATCCCCGGTGTGCGTCGCCTCAAGAGGTCCTGGCTGCCGCAGCCATTGCTCGACCTGAACAAGCTCTTCACGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACGTATAAGTGTACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTNTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCCAATTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA] [+] EMBL AU173992 [GCGACGTCGACATCCCCGGTGTGCGTCGCCTCAAGAGGTCCTGGCTGCCGCAGCCATTGCTCGACCTGAACAAGCTCTTCACGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACTTAAGCATTCTCTCTCGTGTTCGTCTGAGAATAAATATCTACTGCTACATAATTCCTCCTTCAATGTCACGTATAAGTGTACAAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACTNTCGTGTGTGCGGCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTCCAATTGGCACCACCAAAGCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA] [+] EMBL AU096307 [ GTGTTCNTCTGAGAATAAATATCTACTGCTACATAATTCCTCCTTNAATGTCACGTATAAGTGTACANGTGAAAGGAGGGAGTGTGATAAATANAAGCACTCTCGTGTGTGCGGNTATGCGTAGTTTGGGATTGNAAAAGGCCAATTTCCAATTGGCACCACCAAAGCTCCTCNTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTNATTTTTCAGTTTGTTTCAGTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA] consensusID : consensus_12804#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACACGTTCGACGCGCTGGAGCCGGTGGCGCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCGGGTTCCCGCCGGTGTTCGCCGTNGGCCCGCACAGCTCCCTGGCGAGCGAGGCGACGNNCGTCGTGCCGCTGCTGGCGTGGCCGCGGGGCGCGACCACCGCGTGGCGGCGACGGTGGTGGCGAGCAGCGNCGTCGTGGTGTGGATGGAGC] [+] EMBL OSC8901 [CGAAGCAGTTCATCGAGAACGGCCGGGAGATGGTCAAGACCGACGGCGTTCTGATCAACACGTTCGACGCGCTGGAGCCGGTGGCGCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCGGGTTCCCGCCGGTGTTCGCCGTNGGCCCGCACAGCTCCCTGGCGAGCGAGGCGACGNNCGTCGTGCCGCTGCTGGCGTGGCCGCGGGGCGCGACCACCGCGTGGCGGCGACGGTGGTGGCGAGCAGCGNCGTCGTGGTGTGGATGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12804#0 CGACGTTGTGGCGACACGGCTTCGGGTTTGGATGGACACGTGGACTGGGACGGGGAGGAG 60 consensus_12804#1 ----CCTATAGCAAC--TGGTCCGGCCCCCTCAGGTCGCGGTATCGATAACTTATANGAA 54 consensus_12804#2 --------------------------------------------------------GCGA 4 consensus_12804#3 ------------------------------------------------------------ consensus_12804#0 TGTTGGTGACGGGGAGGAGATAGGGGGGAAGTGAAGGAGATGATGGCCGACGCCGGCGTG 120 consensus_12804#1 TCCGGCCGCTG------AGATAGGGGA-AGGTGAAG-AGATGATGGCCGACGCCGGCGT- 105 consensus_12804#2 CGTCGACATCCC-----CGGTGTGCGTCGCCTCAAG-AGGTCCTGGCTGCCGCAGCCAT- 57 consensus_12804#3 ------------------------------------------------------------ consensus_12804#0 CGGGAGAAGGCGGCCAAGGTCGGCGAGGAGGTGTCCAAGGCGGTGGCCGTCGGCGGCACG 180 consensus_12804#1 CGGGAGAAG-CGGCCAAGGTCGGCGAGGAGGTGTCCAAGGCGGTGGC-GTCGGCGGCACG 163 consensus_12804#2 -TGCTCGACCTGAACAAGCTCTTCACGAAGCAGTTCA--TCGAGAACGGCCGG-GAGATG 113 consensus_12804#3 -------------------------CGAAGCAGTTCA--TCGAGAACGGCCGG-GAGATG 32 * ** ** ** ** * * *** * * * consensus_12804#0 AGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCACTTCTC 240 consensus_12804#1 AGCCACACGGGCATCCTGGATTTCGTCGCCAAGCTCAAGGCTGCAACTTAAGCA-TTCTC 222 consensus_12804#2 GTCAAGACCGACGGCGT---TCTGATC-----------------AACTTAAGCA-TTCTC 152 consensus_12804#3 GTCAAGACCGACGGCGT---TCTGATCAACACGTTCGACGC----GCTGGAGCCGGTGGC 85 * * ** * * * * * * ** ** *** * * consensus_12804#0 TCTCGTGTTCGTCTGAGAAGA-AATATCTACTGCTACATAATTCCTCCTTCAATGTCACA 299 consensus_12804#1 TCTCGTGTTCGTCTGAGAAGA-AATATCTACTGCTACATAATTCCTCCTTCAATGTCACA 281 consensus_12804#2 TCTCGTGTTCGTCTGAGAATA-AATATCTACTGCTACATAATTCCTCCTTCAATGTCACG 211 consensus_12804#3 GCTCGCCGCCCTCCGCGACGGCAAGGTCGTCCGCGG----GTTCC--CGCCGGTGTTCGC 139 **** * ** * ** ** ** * ** **** * * *** consensus_12804#0 TATAAGTGTACACAGTGAAAGGAGGGAGTGTGATAAATAAAAGCACCTCTCGTGTGTGCG 359 consensus_12804#1 TATAAGTGTACA-AGTGAAAGGAGGGAGTGTGATAAATAAAAGCAC-TCTCGTGTGTGCG 339 consensus_12804#2 TATAAGTGTACA-AGTGAAAGGAGGGAGTGTGATAAATAAAAGCAC-TNTCGTGTGTGCG 269 consensus_12804#3 CGTNGGCCCGCACAGCTCCCTG-GCGAGCGAGGCGAC-----GNNC--GTCGTGC-CGCT 190 * * ** ** * * *** * * * * * ***** ** consensus_12804#0 GCTATGCGTAGTTTGGGATTGAAAAAGGCCATTTCCCATTGGCAGTTTGGCACCCACCAA 419 consensus_12804#1 GCTATGCGTAGTTTGGGATTGAAAAAGGCCATTTCC-ATTGGCAGTTTGGCACCACCAAA 398 consensus_12804#2 GCTATGCGTAGTTTGGGATTGAAAAAGGCCAATTTC------CAATT-GGCACCACCAAA 322 consensus_12804#3 GCTG-GCGTGGCCGCGGGGCGCGA----CCACCGCGTGGCGGCGAC--GGTGGTGGCGAG 243 *** **** * ** * * *** * ** * * consensus_12804#0 GCTCCTCCTTGTTCCCGGTTAGGAACAA-TTTGGTTGTTTTCATTTTTCAGTTTGTTTCA 478 consensus_12804#1 GCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCA 458 consensus_12804#2 GCTCCTCCTTGTTCCCGGTTAGGAACAAATTTGGTTGTTTTCATTTTTCAGTTTGTTTCA 382 consensus_12804#3 CAGCGNCGTCGTGGTGTGGATGGAGC---------------------------------- 269 * * * ** * *** * consensus_12804#0 GTTGTGTTGCAA-TCTATT----------------AAAAAAAAAA---- 506 consensus_12804#1 GTTGTGTTGCAAATCTATTGTCTTGGATTCACCCCAAAAAAAAAA---- 503 consensus_12804#2 GTTGTGTTGCAAATCTATTGTCTTGGATTCTCCCCAAAAAAAAAAAAAA 431 consensus_12804#3 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||