These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2539 fasta sequence [GCGCACTCACACGCACACCGCACCGCCACACCCGCCTCCACAATCTAAACCCCTCTCTCCCCCTCCCCTCCTCTCCGGCGATGCTGCCGCGTCGCCGCGCGGGGCCCCTCCGCCTCCTCCGTCTCCTCCTCGTCCTCGTCGTTGCCTTCGCGGCGGTGGTCGCATTCTGCCCCGCGGCGGCGGCTGCGGCGGGGGAGGGGGTGGGGGTGGTGGAGGAGGAGGAGGTGCGGGTGGGCGAGGCGGCGGCGGCGGTGGCGCGCGGGGAAGGGGACGACGCGGTGGTGGCGGCGGCGGTGGCGGGAGGGGAGGTGGCGGGCGAGGCGGGGGCGGGGTTGGGGGAGGGGGCGGCGGCGGCCAATGCGACGGGGAAGGAAGGGAGCCTCGCGGAGATGATCGACCGCGCGCTGGAGAAGGAGTTCCCGGAGTCCGAGGGCGAGCAGGGCGGCGGAGAGAAGGACCCCGGCAGCTTCAACAACACGGTGGCTGAGAAGTAGGGAGTCCTGGAAACTGTGGCCAGAAGAGTAACAAAGAAGAATGAGACCAAAGACAATAAGTCATTCCCATTTAAGGAAGTTTTCTTGGATCGGCCAGAGCAAGAGGATGTTCCCACATTGATTGATCGGAAGGATAATGTTTTTATTATATCAAATCCGAAGTCAAAATACCCTGTGCTGCAACTGGACCTTAGATTGATATCGGATCTTGTCGTTGTTATTGTGTCTGCTACATTTGGTGGAATTGCCTTTGCTTGCCTTGGGCAACCTGTGATTACAGGTTATTTACTTGCAGGATCTATAATTGGACCAGGAGGTTTTAGCTTTGTCAGTGAAATGGTGCAAGTTGAAACAGTAGCTCAGTTTGGTGTGATATTTCTGCTGTTTGCTCTGGGACTTGAATTTTCTACAGCAAAACTTCGAGTTGTTCGTGCGGTTGCTGTTGTTGGAGGATTGCTCCAAATCATCCTGTTCATGTTGCTTTGTGGTATTTCTGCTACGCTATGTGGAGGCAAAACAAAAGAAGGTGTTTTTGTTGGTGTTCTTCTTTCTATGTCTTCAACGGCTGTGGTTTTGAAATTTCTGATGGAAAGAAATAGCATCAATGCCCTTCATGGCCAAGTTACGGTTGGCACACTCATATTGCAGGACTGTGCTGTTGGTCTTCTTTTTGCACTTCTTCCAATTCTGAGTGGCGCTTCTGGTCTTCTTCAAGGAGTTGCATCAATGGCCAAGTCGTTGGTGGTATTGATAACATTCCTTACAATCCTTTCCATCCTCTCCCGAACTGGTGTGCCTTGGTTTCTTAAGCTGATGATAAGTCTTTCATCTCAGACAAATGAACTGTACCAGTTGGCAGCTGTTGCATTCTGCTTGTTGTTTGCTTGGTGCAGTGATAAGTTGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGATATCAACAACTGATCTTGCACAACACACACTTGAACAAATTGAACCTATTCGAAACTTCTTCGCTGCTCTTTTCCTTGCCAGCATTGGGATGCTAATTAATGTCCATTTCCTTTGGAACCATGTCGATATACTCCTTGCAGCTGTGATTTTGGTGATAACTGTAAAGACGTTTATTGTTGCTGTTGTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTCTTCTTGTTGGCATGTCTCTTGCACAAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGATTGAGGGCAAACTTTATCTGCTTCTTCTTGGAACCACTGCACTCAGTCTGGTAACAACACCCCTTCTATTCAAAATGATACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATGGTTTTCTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGCACCACGCAAAAGGCT-TACTACT-TTTTAAGTATGGCTTACGCTAAACAGCTCCACATT-GTAAAGTGTTTTTTCGCATGTACGAAAA-GTGTTTGTACCACACATGCACGGCCGTGGAACCTGTGGAGTGGAGTGGAGGCAAAAGAAATCAATCAATCTC-GTTTCGGTTGTCTTGGGATAGATTGATCTGCGAGTGGTGCAATGGGCAATAGAGTTTGCCGGTTTTGGGAGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAAACCCCACA-AATGAGGGTTTTCTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTC-GTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTCCGTTTCTATTACTGACTTCGAACCGAAAAAAAAAAAAAAACCCTTTTGGAAAAAAAAAA] [+] EMBL AK120422 [GCGCACTCACACGCACACCGCACCGCCACACCCGCCTCCACAATCTAAACCCCTCTCTCCCCCTCCCCTCCTCTCCGGCGATGCTGCCGCGTCGCCGCGCGGGGCCCCTCCGCCTCCTCCGTCTCCTCCTCGTCCTCGTCGTTGCCTTCGCGGCGGTGGTCGCATTCTGCCCCGCGGCGGCGGCTGCGGCGGGGGAGGGGGTGGGGGTGGTGGAGGAGGAGGAGGTGCGGGTGGGCGAGGCGGCGGCGGCGGTGGCGCGCGGGGAAGGGGACGACGCGGTGGTGGCGGCGGCGGTGGCGGGAGGGGAGGTGGCGGGCGAGGCGGGGGCGGGGTTGGGGGAGGGGGCGGCGGCGGCCAATGCGACGGGGAAGGAAGGGAGCCTCGCGGAGATGATCGACCGCGCGCTGGAGAAGGAGTTCCCGGAGTCCGAGGGCGAGCAGGGCGGCGGAGAGAAGGACCCCGGCAGCTTCAACAACACGGTGGCTGAGAAGTAGGGAGTCCTGGAAACTGTGGCCAGAAGAGTAACAAAGAAGAATGAGACCAAAGACAATAAGTCATTCCCATTTAAGGAAGTTTTCTTGGATCGGCCAGAGCAAGAGGATGTTCCCACATTGATTGATCGGAAGGATAATGTTTTTATTATATCAAATCCGAAGTCAAAATACCCTGTGCTGCAACTGGACCTTAGATTGATATCGGATCTTGTCGTTGTTATTGTGTCTGCTACATTTGGTGGAATTGCCTTTGCTTGCCTTGGGCAACCTGTGATTACAGGTTATTTACTTGCAGGATCTATAATTGGACCAGGAGGTTTTAGCTTTGTCAGTGAAATGGTGCAAGTTGAAACAGTAGCTCAGTTTGGTGTGATATTTCTGCTGTTTGCTCTGGGACTTGAGTTTTCTACAGCAAAACTTCGAGTTGTTCGTGCGGTTGCTGTTGTTGGAGGATTGCTCCAAATCATCCTGTTCATGTTGCTTTGTGGTATTTCTGCTACGCTATGTGGAGGCAAAACAAAAGAAGGTGTTTTTGTTGGTGTTCTTCTTTCTATGTCTTCAACGGCTGTGGTTTTGAAATTTCTGATGGAAAGAAATAGCATCAATGCCCTTCATGGCCAAGTTACGGTTGGCACACTCATATTGCAGGACTGTGCTGTTGGTCTTCTTTTTGCACTTCTTCCAATTCTGAGTGGCGCTTCTGGTCTTCTTCAAGGAGTTGCATCAATGGCCAAGTCGTTGGTGGTATTGATAACATTCCTTACAATCCTTTCCATCCTCTCCCGAACTGGTGTGCCTTGGTTTCTTAAGCTGATGATAAGTCTTTCATCTCAGACAAATGAACTGTACCAGTTGGCAGCTGTTGCATTCTGCTTGTTGTTTGCTTGGTGCAGTGATAAGTTGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGATATCAACAACTGATCTTGCACAACACACACTTGAACAAATTGAACCTATTCGAAACTTCTTCGCTGCTCTTTTCCTTGCCAGCATTGGGATGCTAATTAATGTCCATTTCCTTTGGAACCATGTCGATATACTCCTTGCAGCTGTGATTTTGGTGATAACTGTAAAGACGTTTATTGTTGCTGTTGTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTCTTCTTGTTGGCATGTCTCTTGCACAAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGATTGAGGGCAAACTTTATCTGCTTCTTCTTGGAACCACTGCACTCAGTCTGGTAACAACACCCCTTCTATTCAAAATGATACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATGGTTTTCTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGCACCACGCAAAAGGCT TACTACT TTTTAAGTATGGCTTACGCTAAACAGCTCCACATT GTAAAGTGTTTTTTCGCATGTACGAAAA GTGTTTGTACCACACATGCACGGCCGTGGAACCTGTGGAGTGGAGTGGAGGCAAAAGAAATCAATCAATCTC GTTTCGGTTGTCTTGGGATAGATTGATCTGCGAGTGGTGCAATGGGCAATAGAGTTTGCCGGTTTTGGGAGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAAACCCCACA AATGAGGGTTTTCTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTC GTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTC ] [+] EMBL CB658054 [ GCGGCGGCGGTGGCGGGAGGGGAGGTGGCGGGCGAGGCGGGGGCGGGGTTGGGGGAGGGGGCGGCGGCGGCCAATGCGACGGGGAAGGAAGGGAGCCTCGCGGAGATGATCGACCGCGCGCTGGAGAAGGAGTTCCCGGAGTCCGAGGGCGAGCAGGGCGGCGGAGAGAAGGACCCCGGCAGCTTCAACAACACGGTGGCTGAGAAGCAGGGAGTCCTGGAAACTGTGGCCAGAAGAGTAACAAAGAAGAATGAGACCAAAGACAATAAGTCATTCCCATTTAAGGAAGTTTTCTTGGATCGGCCAGAGCAAGAGGATGTTCCCACATTGATTGATCGGAAGGATAATGTTTTTATTATATCAAATCCGAAGTCAAAATACCCTGTGCTGCAACTGGACCTTAGATTGATATCGGATCTTGTCGTTGTTATTGTGTCTGCTACATTTGGTGGAATTGCCTTTGCTTGCCTTGGGCAACCTGTGATTACAGGTTATTTACTTGCAGGATCTATAATTGGACCAGGAGGTTTTAGCTTTGTCAGTGAAATGGTGCAAGTTGAAACAGTAGCTCAGTTTGGTGTGATATTTCTGCTGTTTGCTCTGGGACTTGAATTTTCTACAGCAAAACTTCGAGTTGTTCGTGCGGTTGCTGTTGTTGGAGGATTGCTCCAAATCATCCTGTTC ] [+] EMBL CB661585 [ CAAAATACCCTGTGCTGCAACTGGACCTTAGATTGATATCGGATCTTGTCGTTGTTATTGTGTCTGCTACATTTGGTGGAATTGCCTTTGCTTGCCTTGGGCAACCTGTGATTACAGGTTATTTACTTGCAGGATCTATAATTGGACCAGGAGGTTTTAGCTTTGTCAGTGAAATGGTGCAAGTTGAAACAGTAGCTCAGTTTGGTGTGATATTTCTGCTGTTTGCTCTGGGACTTGAATTTTCTACAGCAAAACTTCGAGTTGTTCGTGCGGTTGCTGTTGTTGGAGGATTGCTCCAAATCATCCTGTTCATGTTGCTTTGTGGTATTTCTGCTACGCTATGTGGAGGCAAAACAAAAGAAGGTGTTTTTGTTGGTGTTCTTCTTTCTATGTCTTCAACGGCTGTGGTTTTGAAATTTCTGATGGAAAGAAATAGCATCAATGCCCTTCATGGCCAAGTTACGGTTGGCACACTCATATTGCAGGACTGTGCTGTTGGTCTTCTTTTTGCACTTCTTCCAATTCTGAGTGGCGCTTCTGGTCTTCTTCAAGGAGTTGCATCAATGGCCAAGTCGTTGGTGGTATTGATAACATTCCTTACAATCCTTTCCATCCTCTCCCGAACTGGTGTGCCTTGGTTTCTTAAGCTGATGATAAGTCTTTCATCTCAGACAAATGAACTGTACCAGTTGGCAGCTGTTGCATTCTGCTTGTTGTTTGCTTGGTGCAGTGATAAGTTGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGATATCAAnc ] [-] EMBL CB658055 [ ACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATGGTTTTCTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGCACCACGCAAAAGGCT TACTACT TTTTAAGTATGGCTTACGCTAAACAGCTCCCCATT GTAAAGTGTTTTTTCGCATGTACGAAAA GTGTTTGTACCACACATGCACGGCCGTGGAACCTGTGGAGTGGAGTGGAGGCAAAAGAAATCAATCAATCTC GTTTCGGTTGTCTTGGGATAGATTGATCTGCGAGTGGTGCAATGGGCAATAGAGTTTGCCGGTTTTGGGAGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAACCCCCACA AATGAGGGTTTTTTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTC GTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAAAGACCTTTTACCTTTAAAGGACCTT ] [-] EMBL CA762142 [ CACCTCGGTG TCTCTTAAGATGGTTTTCTGTTAATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGGCATATTTTGGCACCACGCAAAAGGCT TACTACT TTTTAAGTATGGCTTACGCTAAACAGCTCCACATT GTAAAGTGTTTTTTCGCATGTGCGAAAA GTGTTTGTACCACACATGCACGGCCGTGGAACCTGTGGAGTGGAGTGGAGGCAAAAGAAATCAATCAATCTC GTTTCGGTTGTCTTGGGATAGATTGATCTGCGAGTGGTGCAATGGGCAATAGAGTTTGCCGGTTTTGGGAGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAAACCCCACA AATGAGGGTTTTCTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTC GTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTCCGTTTCTATTACTGACTTCGAACCGAAAAAAAAAAAAAAA ] [+] EMBL BQ908006 [ ACCAACCCAAAGGCTGTACTACTGTTGTAAGTATGGCTTACGCTNAACAGCTCCACATTGGTAAAGTGTTTTTTCGCATGTACGAAAAGGTGTTTGTACCACACATGCACGNCCGTGGAACCTGTGGAGTGGAGTGGAGGCCAAAGAAATCCATCAATCTCGGTTTCGGTTGTCTTGGGATAGATTGATCTGCGAGTGGTGCCATGGGCCATAGAGTTTGCCGGTTTTGGGAGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAAACCCCACANAATGAGGGTTTTCTATGTAACATAACCATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTCAGTTACCATGCCNTTGTATTCCTTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCCTTATCTAACCTTGTCCGTTTCTATTACTGACTTCGAATCGAATCCAAAATGGATGCCCTTTTGGAAAAAAAAAA] consensusID : consensus_12809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [TTAGCGTGNTCCCGGCCGAAGNACGCGGGGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGATATCACCAACTGATCTTGCNCAACACACACTTGAACAAATTGAACCTATTCGAAACTTCTTTCGCTGCTCTTTTCCTTGCCAGCATTGGGATGCTAATTAATGTCCATTTCCTTTGGAACCATGTCGATATACTCCTTGCAGCTGTGATTTTGGTGATAACTGTAAAGACGTTTATTGTTGCTGTTGTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTCTTCTTGTTGGCATGTCTCTTGCACAAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGATTGAGGGCAAACTTTATCTGCTTCTTCTTGGAACCACTGCACTCAGTCTGGTAACAACACCCCTTCTATTCAAAATGATACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATGGTTTTCTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGCACCACGCAAAAGGCTTACTACTTTTTAAGTATGGCTTACGCTAAACAGCTCCACATTGTAAAGTGTTTT] [-] EMBL BF475235 [TTAGCGTGNTCCCGGCCGAAGNACGCGGGGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGATATCACCAACTGATCTTGCNCAACACACACTTGAACAAATTGAACCTATTCGAAACTTCTTTCGCTGCTCTTTTCCTTGCCAGCATTGGGATGCTAATTAATGTCCATTTCCTTTGGAACCATGTCGATATACTCCTTGCAGCTGTGATTTTGGTGATAACTGTAAAGACGTTTATTGTTGCTGTTGTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTCTTCTTGTTGGCATGTCTCTTGCACAAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGATTGAGGGCAAACTTTATCTGCTTCTTCTTGGAACCACTGCACTCAGTCTGGTAACAACACCCCTTCTATTCAAAATGATACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATGGTTTTCTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGCACCACGCAAAAGGCTTACTACTTTTTAAGTATGGCTTACGCTAAACAGCTCCACATTGTAAAGTGTTTT] consensusID : consensus_12809#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 394 fasta sequence [AAAGAAATCAATTCAATCCTCCGTTTCCGNTTGTCTTGGGATAGATTGATCTGCGANTGGTGCAATGGGCAATAGNGTTTGCCGGTTTTGGGGGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAAACCCCACAAATGAGGGTTTTCTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTCGTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTCNGTTTCTNTTAAAAAAAAAAAAA] [+] EMBL AU031402 [AAAGAAATCAATTCAATCCTCCGTTTCCGNTTGTCTTGGGATAGATTGATCTGCGANTGGTGCAATGGGCAATAGNGTTTGCCGGTTTTGGGGGGAGAGCAGCATGCAGCATACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAATTTGAGTGTGTAAACCCCACAAATGAGGGTTTTCTATGTAACATAACAATGTATGCTGATTAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTCGTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTCNGTTTCTNTTAAAAAAAAAAAAA] [+] EMBL BE230362 [ TAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTCGTTACCATGCCATTGTATTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTAACTAGTGACCTTTTACCATTATCTAACCTTGTC ] consensusID : consensus_12809#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [AAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGATTGAGGTTATTTCTCCATATTTTGTTCCTATCATGTGTTGCTCCAAAGCTTCCTGCCTGTCAATGTTGTTTTATACTCTCATGGTTACACTCAGTTCTAGCTAGCTTCTGACTAATTTTGCTCTAGCTTGCTTTTGGAGTAGTCAATAGTTTAACTGTTCTGTTATGATAATATATGTTGTCTTGTGAGCNCTGAGGTGCGTGTACTTTC] [+] EMBL AU095350 [AAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGATTGAGGTTATTTCTCCATATTTTGTTCCTATCATGTGTTGCTCCAAAGCTTCCTGCCTGTCAATGTTGTTTTATACTCTCATGGTTACACTCAGTTCTAGCTAGCTTCTGACTAATTTTGCTCTAGCTTGCTTTTGGAGTAGTCAATAGTTTAACTGTTCTGTTATGATAATATATGTTGTCTTGTGAGCNCTGAGGTGCGTGTACTTTC] consensusID : consensus_12809#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TCCATTTCCTTTGGAACCATGTCGATATACTCCTTGCAGCTTTTATTTTTGTGATAACTGTAAAGACGTTTATTTTTGTGTTTTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTTTTCTTTTTGGCATGTTTCTTGCACAATTAGGAGATTTTGCTTTTTGTCTCCTAAGCCGTGCTCAAGCATCCATCTGATTGAGGGCAAACTTAGCGCTCTCCTTGG] [+] EMBL AA750530 [TCCATTTCCTTTGGAACCATGTCGATATACTCCTTGCAGCTTTTATTTTTGTGATAACTGTAAAGACGTTTATTTTTGTGTTTTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTTTTCTTTTTGGCATGTTTCTTGCACAATTAGGAGATTTTGCTTTTTGTCTCCTAAGCCGTGCTCAAGCATCCATCTGATTGAGGGCAAACTTAGCGCTCTCCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12809#0 GCGCACTCACACGCACACCGCACCGCCACACCCGCCTCCACAATCTAAACCCCTCTCTCC 60 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CCCTCCCCTCCTCTCCGGCGATGCTGCCGCGTCGCCGCGCGGGGCCCCTCCGCCTCCTCC 120 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GTCTCCTCCTCGTCCTCGTCGTTGCCTTCGCGGCGGTGGTCGCATTCTGCCCCGCGGCGG 180 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CGGCTGCGGCGGGGGAGGGGGTGGGGGTGGTGGAGGAGGAGGAGGTGCGGGTGGGCGAGG 240 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CGGCGGCGGCGGTGGCGCGCGGGGAAGGGGACGACGCGGTGGTGGCGGCGGCGGTGGCGG 300 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GAGGGGAGGTGGCGGGCGAGGCGGGGGCGGGGTTGGGGGAGGGGGCGGCGGCGGCCAATG 360 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CGACGGGGAAGGAAGGGAGCCTCGCGGAGATGATCGACCGCGCGCTGGAGAAGGAGTTCC 420 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CGGAGTCCGAGGGCGAGCAGGGCGGCGGAGAGAAGGACCCCGGCAGCTTCAACAACACGG 480 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TGGCTGAGAAGTAGGGAGTCCTGGAAACTGTGGCCAGAAGAGTAACAAAGAAGAATGAGA 540 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CCAAAGACAATAAGTCATTCCCATTTAAGGAAGTTTTCTTGGATCGGCCAGAGCAAGAGG 600 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 ATGTTCCCACATTGATTGATCGGAAGGATAATGTTTTTATTATATCAAATCCGAAGTCAA 660 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 AATACCCTGTGCTGCAACTGGACCTTAGATTGATATCGGATCTTGTCGTTGTTATTGTGT 720 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CTGCTACATTTGGTGGAATTGCCTTTGCTTGCCTTGGGCAACCTGTGATTACAGGTTATT 780 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TACTTGCAGGATCTATAATTGGACCAGGAGGTTTTAGCTTTGTCAGTGAAATGGTGCAAG 840 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TTGAAACAGTAGCTCAGTTTGGTGTGATATTTCTGCTGTTTGCTCTGGGACTTGAATTTT 900 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CTACAGCAAAACTTCGAGTTGTTCGTGCGGTTGCTGTTGTTGGAGGATTGCTCCAAATCA 960 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TCCTGTTCATGTTGCTTTGTGGTATTTCTGCTACGCTATGTGGAGGCAAAACAAAAGAAG 1020 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GTGTTTTTGTTGGTGTTCTTCTTTCTATGTCTTCAACGGCTGTGGTTTTGAAATTTCTGA 1080 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TGGAAAGAAATAGCATCAATGCCCTTCATGGCCAAGTTACGGTTGGCACACTCATATTGC 1140 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 AGGACTGTGCTGTTGGTCTTCTTTTTGCACTTCTTCCAATTCTGAGTGGCGCTTCTGGTC 1200 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TTCTTCAAGGAGTTGCATCAATGGCCAAGTCGTTGGTGGTATTGATAACATTCCTTACAA 1260 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TCCTTTCCATCCTCTCCCGAACTGGTGTGCCTTGGTTTCTTAAGCTGATGATAAGTCTTT 1320 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CATCTCAGACAAATGAACTGTACCAGTTGGCAGCTGTTGCATTCTGCTTGTTGTTTGCTT 1380 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GGTGCAGTGATAAGTTGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGA 1440 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TATCAACAACTGATCTTGCACAACACACACTTGAACAAATTGAACCTATTCGAAACTTCT 1500 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TCGCTGCTCTTTTCCTTGCCAGCATTGGGATGCTAATTAATGTCCATTTCCTTTGGAACC 1560 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 ATGTCGATATACTCCTTGCAGCTGTGATTTTGGTGATAACTGTAAAGACGTTTATTGTTG 1620 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CTGTTGTCGTTAAAGGGTTTGGCTATAGCAACAAAACATCTCTTCTTGTTGGCATGTCTC 1680 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TTGCACAAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCAAGCATCCATCTGA 1740 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TTGAGGGCAAACTTTATCTGCTTCTTCTTGGAACCACTGCACTCAGTCTGGTAACAACAC 1800 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CCCTTCTATTCAAAATGATACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATGGTTTT 1860 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 CTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGATAGCG 1920 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGCACCAC 1980 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GCAAAAGGCTTACTACTTTTTAAGTATGGCTTACGCTAAACAGCTCCACATTGTAAAGTG 2040 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ------------------------------------------------------------ consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TTTTTTCGCATGTACGAAAAGTGTTTGTACCACACATGCACGGCCGTGGAACCTGTGGAG 2100 consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 -----------------------------------------------TTAGCGTGNTCCC 13 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 TGGAGTGGAGGCAAAAGAAATCAAT-CAATCT--CGTTTC-GGTTGTCTTGGGATAGATT 2156 consensus_12809#2 -------------AAAGAAATCAATTCAATCCTCCGTTTCCGNTTGTCTTGGGATAGATT 47 consensus_12809#1 GGCCGAAGNACGCGGGGGGCTTGAGTCTTGAGTTGGGTTCGTTCGCAGCTGGAGTAATGA 73 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 GATCTGCGAGTGGT-----GCAATGGGCAATAGAGTTTGCCGGTTTTGGGAGGAGAGCAG 2211 consensus_12809#2 GATCTGCGANTGGT-----GCAATGGGCAATAGNGTTTGCCGGTTTTGGGGGGAGAGCAG 102 consensus_12809#1 TATCACCAACTGATCTTGCNCAACACACACTTGAACAAATTGAACCTATTCGAAACTTCT 133 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------AAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTG 36 consensus_12809#0 CATGCAGCA----TACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAA 2267 consensus_12809#2 CATGCAGCA----TACCTGCCTTGGGATGAATGGCGGTGTGCTGCATCGCTCGCTGGAAA 158 consensus_12809#1 TTCGCTGCTCTTTTCCTTGCCAGCATTGGGATGCTAATTAATGTCCATTTCCTTTGGAAC 193 consensus_12809#4 -------------------------------------------TCCATTTCCTTTGGAAC 17 consensus_12809#3 CTTCAAGCA--TCCATCTGATTGAGGTTATTTCTCCATATTTTGTTCCTATCATGTGTTG 94 * * consensus_12809#0 TTTGAGTGTGTAAACCCCACAAATGAGGGTTTTCTATGTAACATAACAATGTATGCTGAT 2327 consensus_12809#2 TTTGAGTGTGTAAACCCCACAAATGAGGGTTTTCTATGTAACATAACAATGTATGCTGAT 218 consensus_12809#1 CATGTCGATATACTCCTTGCAGCTGTGATTTTGGTGATAACTGTAAAGACGTTTATT--G 251 consensus_12809#4 CATGTCGATATACTCCTTGCAGCTTTTATTTTTGTGATAACTGTAAAGACGTTTATT--T 75 consensus_12809#3 CTCCAAAGCTTCCTGCCTGTCAATGTTG-TTTTATACTC-TCATGGTTACACTCAGTT-C 151 * * * *** * * * * consensus_12809#0 TAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTCGTTACCATGCCATTGTA 2387 consensus_12809#2 TAATTGATTGGATTAGCGAGATAGGGTTTAGTTTGGCTTGGTCGTTACCATGCCATTGTA 278 consensus_12809#1 TTGCTGTTGTCGTTAAAGGGTTTGGCTATAGCAACAAAACATC-TCTTCTTGTTGGCATG 310 consensus_12809#4 TTG-TGTTTTCGTTAAAGGGTTTGGCTATAGCAACAAAACATC-TTTTCTTTTTGGCATG 133 consensus_12809#3 TAGCTAGCTT--CTGACTAATTTTGCTCTAGCTTGCTTTTGGAGTAGTCAA--TAGTTTA 207 * * * * * * *** * * * consensus_12809#0 TTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTA 2447 consensus_12809#2 TTCATTTTGTCAGCGCTTGTGTACGCGTTTCTCATCGCGAATTTTGCTGTGTAGTTTGTA 338 consensus_12809#1 TCTCTTGCACAAATAGGAGAGTTTGCTTTTGTTCTTCTAAGCCGTGCTTCA-AGCATCCA 369 consensus_12809#4 TTTCTTGCACAATTAGGAGATTTTGCTTTTTGTCTCCTAAGCCGTGCT-CA-AGCATCCA 191 consensus_12809#3 ACTGTTCTGTTA-TGATAATATATG----TTGTCTTGTGAGCNCTGAGGTG-CGTGTACT 261 ** * * * * * * ** * * consensus_12809#0 ACTAGTGACCTTTTACCATTATCTAACCTTGTCCGTTTCTATTACTGACTTCGAACCGAA 2507 consensus_12809#2 ACTAGTGACCTTTTACCATTATCTAACCTTGTCNGTTTCTNTTA--------------AA 384 consensus_12809#1 TCTGATTGAGGGCAAACTTTATCTGCTTCTTCTTGGAACCACTGCACTCAGTCTGGTAAC 429 consensus_12809#4 TCTGATTGAGGGCAAACTTAGCGC---TCTCCTTGG------------------------ 224 consensus_12809#3 TTC--------------------------------------------------------- 264 consensus_12809#0 AAAAAAAAAAAAACCCTTTTGGAAAAAAAAAA---------------------------- 2539 consensus_12809#2 AAAAAAAAAA-------------------------------------------------- 394 consensus_12809#1 AACACCCCTTCTATTCAAAATGATACCCGCGGTGGTCCACCTCGGTGTTCTCTTGAGATG 489 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 ------------------------------------------------------------ consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 GTTTTCTGTTGATAGCAATCAGGTGGAGTTGGGCCTAAAAAGTGATGGCCTCCGCATCGA 549 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 ------------------------------------------------------------ consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 TAGCGGCAAGCGCATAAATTTGATAGTCCAAGGCTCACATGACTCATGACATATTTTGGC 609 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 ------------------------------------------------------------ consensus_12809#2 ------------------------------------------------------------ consensus_12809#1 ACCACGCAAAAGGCTTACTACTTTTTAAGTATGGCTTACGCTAAACAGCTCCACATTGTA 669 consensus_12809#4 ------------------------------------------------------------ consensus_12809#3 ------------------------------------------------------------ consensus_12809#0 --------- consensus_12809#2 --------- consensus_12809#1 AAGTGTTTT 678 consensus_12809#4 --------- consensus_12809#3 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||