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Oryza sativa
cluster # 12810 cluster # 12810       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12810#0 length = 1940 sequences # 4  
consensus_12810#1 length = 792 sequences # 6  
consensus_12810#2 length = 513 sequences # 1  

consensusID : consensus_12810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1940
fasta sequence
                              [ATTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGGTGAGAGAGTTTCCTTATTCCTTTCAAAATATAAGACACTGTATGGTTTTTAATTAAATCTTACAATTCCCTTTTCTTGTCCAGCACCGAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCGATGTCAATGTTNGNTGTNTCAGCCCTTCTGTAATATCATCTATGTATTCACCAATACATGCATGTAAATATGTCTTATGGCTTAGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATTGTAGTCAGACTTGTGCCCGCTGGTTATCTCCCATGTCATGTCCTAGTGATAGCATCATGCCTCCACTAATGCAGCTGTACCAAGACTTAGTCTAATTGCAGGGATGGCTGGCAATTTGTGTTTTAATATTTAATCTAGTGATGTTTGTTGTTGCTTCTGTGTTCCAGTGTGACCAAGTTTGTGCTTGAGTTCTTGGTGTATTTTGTTCTTCTCGTCAAAGTTGGTTTGTATTATGTTGGGCATCACAAAAGATAATGTCATTGTCTACTATTTAAAAAACAGTGCAAATCTACTGAAATTTAATGTTTATTTATGAATATGAAAGATGTTTTAGATGACTTGTTCGTCTTGAGCAATATTTTTATGGAAGTCACAGGCATTCATATGCATCATCACTCTGGATCCAGCATTGGCCGCCTCTGGCTCTGGAGTGATGGAGACGTGCATTTCCTATTGCTTGAGTGCTCAGCTGCAACATCAATCTTCTGGTATGCCTACTTGCTCATCTTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTTGGAAATATTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTTGGAAATATTTATAATGTCGAACAACAATTCAAGATGGACTTTGCCTGTCATGCAAGCTTGCTACTTGTTTTTTTGACCCTGTGTGCAGTCAGTTTGTGAAGAACCCTACTGAAGGTGGGTAATTTTGATGCGGAAGATAGTGCGACTTCTGAGCTGCACCGCCTGCACAGATCTTAGGTGAGCTACTGTTTAAATTGTGGAGTTTGTAAGCATCAGGCGGTTTATCTTGTGAAGTTTTGCTTCATAGACTCGACATCCAGGATTCAGGAACGATAAGAATTGAACCTTTCCTTCCTGCTTTCTCAGATCGTCTTTTTTCATAATTAGCT]

[+] EMBL AK099731             [ATTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGGTGAGAGAGTTTCCTTATTCCTTTCAAAATATAAGACACTGTATGGTTTTTAATTAAATCTTACAATTCCCTTTTCTTGTCCAGCACCGAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA766408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCGATGTCAATGTTNGNTGTNTCAGCCCTTCTGTAATATCATCTATGTATTCACCAATACATGCATGTAAATATGNCNCNTGGCTTAGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATNNAAAACAGACTTGTGCCCGCTGGTTATCTCCCATGTCACGTCCTAGTGATAGCATCATGCCTCCACTAATGCAGCTGTACCAAGACTTAGTCTAATTGCAGGGATGGCTGGCAATTTGTGTTTTAATATTTAATCTAGTGATGTTTGTTGTTGCTTCTGTGTTCCAGTGTGACCAAGTTTGTGCTTGAGTTCTTGGTGTATTTTGTTCTTCTCGTCAAAGTTGGTTTGTATTATGTTGGGCATCACAAAAGATAATGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA305784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCGATGTCAATGTTTGTTGTCTCAGCCCTTCTGTAATATCATCTATGTATTCACCAATACATGCATGTAAATATGTCTTATGGCTTAGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATTGTAGTCAGACTTGTGCCCGCTGGTTATCTCCCATGTCATGTCCTAGTGATAGCATCATGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK120426             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTATGTATTCACCATTACATGCATGTAAATATGTCTTATGGCTTAGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATTGTAGTCAGACTTGTGCCCGCTGGTTATCTCCCATGTCATGTCCTAGTGATAGCATCATGCCTCCACTAATGCAGCTGTACCAAGACTTAGTCTAATTGCAGGGATGGCTGGCAATTTGTGTTTTAATATTTAATCTAGTGATGTTTGTTGTTGCTTCTGTGTTCCAGTGGGACCAAGTTTGTGCTTGAGTTCTTGGTGTATTTTGTTCTTCTCGTCAAAGTTGGTTTGTATTATGTTGGGCATCACAAAAGATAATGTCATTGTCTACTATTTAAAAAACAGTGCAAATCTACTGAAATTTAATGTTTATTTATGAATATGAAAGATGTTTTAGATGACTTGTTCGTCTTGAGCAATATTTTTATGGAAGTCACAGGCATTCATATGCATCATCACTCTGGATCCAGCATTGGCCGCCTCTGGCTCTGGAGTGATGGAGACGTGCATTTCCTATTGCTTGAGTGCTCAGCTGCAACATCAATCTTCTGGTATGCCTACTTGCTCATCTTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTTGGAAATATTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTTGGAAATATTTATAATGTCGAACAACAATTCAAGATGGACTTTGCCTGTCATGCAAGCTTGCTACTTGTTTTTTTGACCCTGTGTGCAGTCAGTTTGTGAAGAACCCTACTGAAGGTGGGTAATTTTGATGCGGAAGATAGTGCGACTTCTGAGCTGCACCGCCTGCACAGATCTTAGGTGAGCTACTGTTTAAATTGTGGAGTTTGTAAGCATCAGGCGGTTTATCTTGTGAAGTTTTGCTTCATAGACTCGACATCCAGGATTCAGGAACGATAAGAATTGAACCTTTCCTTCCTGCTTTCTCAGATCGTCTTTTTTCATAATTAGCT]


>consensus_12810#0 ATTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGC CGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCG CCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCA TGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGA GGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTG ACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTG CCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGAT TTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAG TGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCAT CGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTG CGCACTCTGAGGGTGAGAGAGTTTCCTTATTCCTTTCAAAATATAAGACACTGTATGGTT TTTAATTAAATCTTACAATTCCCTTTTCTTGTCCAGCACCGAGTGGGATATCGAGTAGAG GATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACG TTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCC AGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCGATGTCAATGTTNGNTGTNTCAGC CCTTCTGTAATATCATCTATGTATTCACCAATACATGCATGTAAATATGTCTTATGGCTT AGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATTGTAGTCAGACT TGTGCCCGCTGGTTATCTCCCATGTCATGTCCTAGTGATAGCATCATGCCTCCACTAATG CAGCTGTACCAAGACTTAGTCTAATTGCAGGGATGGCTGGCAATTTGTGTTTTAATATTT AATCTAGTGATGTTTGTTGTTGCTTCTGTGTTCCAGTGTGACCAAGTTTGTGCTTGAGTT CTTGGTGTATTTTGTTCTTCTCGTCAAAGTTGGTTTGTATTATGTTGGGCATCACAAAAG ATAATGTCATTGTCTACTATTTAAAAAACAGTGCAAATCTACTGAAATTTAATGTTTATT TATGAATATGAAAGATGTTTTAGATGACTTGTTCGTCTTGAGCAATATTTTTATGGAAGT CACAGGCATTCATATGCATCATCACTCTGGATCCAGCATTGGCCGCCTCTGGCTCTGGAG TGATGGAGACGTGCATTTCCTATTGCTTGAGTGCTCAGCTGCAACATCAATCTTCTGGTA TGCCTACTTGCTCATCTTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTT GGAAATATTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTTGGAAATATT TATAATGTCGAACAACAATTCAAGATGGACTTTGCCTGTCATGCAAGCTTGCTACTTGTT TTTTTGACCCTGTGTGCAGTCAGTTTGTGAAGAACCCTACTGAAGGTGGGTAATTTTGAT GCGGAAGATAGTGCGACTTCTGAGCTGCACCGCCTGCACAGATCTTAGGTGAGCTACTGT TTAAATTGTGGAGTTTGTAAGCATCAGGCGGTTTATCTTGTGAAGTTTTGCTTCATAGAC TCGACATCCAGGATTCAGGAACGATAAGAATTGAACCTTTCCTTCCTGCTTTCTCAGATC GTCTTTTTTCATAATTAGCT



consensusID : consensus_12810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 792
fasta sequence
                              [TTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATA-CCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG]

[+] EMBL AK061869             [TTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATA CCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG]
[+] EMBL AK104745             [TTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATA CCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG]
[+] EMBL AK060130             [TTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATA CCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG]
[+] EMBL AK073321             [  GCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATA CCGCCACCAAAGCCGGCTCAGCTAACGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG]
[+] EMBL CA756120             [                 GTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCCGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCCGCCACC AAGNCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGGCACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCNAACCATTCTTATAGTGCGCACTCTGAGGCACCn                                                                                                                                                                                ]
[+] EMBL AU058387             [                                                                 CCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGCCTCGCCTCGCCCTCCTGCANCACGCGCGGCTGGNTGNCCGACNCAGATNCGGAGCGCCATGTCGAGGAATCCGGGCTGCANCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGANGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGG AACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTA  NTATTTTCTGGCCTTG TCG CCTCAT ATAG ACACTTAGA TTGCGA                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_12810#1 TTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGCC GTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCGC CTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCAT GTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGAG GGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGA CAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGC CCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATT TGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGT GAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATC GCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGC GCACTCTGAGGCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATA TAGTAGACGCGTATTTGGTTCTGTTCTGAATGACGTTAGCCGTCGTACTGACAGGCAACC AATTCCATACCCGTCCTACTAGCATATTGAGCTCCAGGGAAGAACATGGTATGCTAACAG ATTAGCCCAGCG



consensusID : consensus_12810#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence
                              [ATAGCACCACCACGCCGCGCCGCCGTGAGCTGATTGCCAACGAATTCCCCGTGCGCCCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTTTTTTTAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTAGTGTTTCTTATTAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAGGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGT]

[+] EMBL CF281529             [ATAGCACCACCACGCCGCGCCGCCGTGAGCTGATTGCCAACGAATTCCCCGTGCGCCCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTTTTTTTAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTAGTGTTTCTTATTAGGTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAGGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGT]


>consensus_12810#2 ATAGCACCACCACGCCGCGCCGCCGTGAGCTGATTGCCAACGAATTCCCCGTGCGCCCAC GCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCG TTTTTTTAGGTAACTTGGATGAAAAGGTACCTGAGAGGGTCTTGTAGTGTTTCTTATTAG GTAGGTCGTGTTGTAGACCTACACATACCACGTGACAAGGAAACTAATCGCTCCAAAGGT TATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAGTATGCTGTTAAGCTATTTTCT GGCCTTGTTCGTCTTCATAATAGAACACTTAGATTTGCGATTTCTGGACAAGACAGGCAA TCTTCTAATGGAAATATTCCTGTAACACCTAAAGTGAACCCTATACCGCCACCAAAGCCG GCTCAGCTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGG ATTGCTGGTATTTCTCCAAACCATTCTTATAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12810#0      ATTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGC 60
consensus_12810#1      -TTGCCAACGAATTCCCCGTGCGCCGTGCGCCTCGCCCTCCCCTCCCTCCCTCCTCGTGC 59
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      CGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCG 120
consensus_12810#1      CGTTGCCCCCCGGTTGGACTCGGCGCGCTTGCTTCTCGCTCGCGGCTGCTCGTAACCTCG 119
consensus_12810#2      -------------------ATAGCACCACCACGCCGCGCCGCCGTGAGCTGATTGCCAAC 41
                                             ** *     *  * ***   **   ***  *  **   

consensus_12810#0      CCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCA 180
consensus_12810#1      CCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCA 179
consensus_12810#2      GAATTCCCCGTGCGCC-----CACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCA 96
                            ** **  * **     ***************************************

consensus_12810#0      TGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGA 240
consensus_12810#1      TGTCGAGGAATCCGGGCTGCACCGTCTTCATAGGTAACTTGGATGAAAAGGTACCTGAGA 239
consensus_12810#2      TGTCGAGGAATCCGGGCTGCACCGTTTTTTTAGGTAACTTGGATGAAAAGGTACCTGAGA 156
                       ************************* **  ******************************

consensus_12810#0      GGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTG 300
consensus_12810#1      GGGTCTTGTATGAGATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCACGTG 299
consensus_12810#2      GGGTCTTGTA-GTGTTTCTTATT-AGGTAGGTCGTGTTGTAGACCTACACATACCACGTG 214
                       ********** * * ******** ************************************

consensus_12810#0      ACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTG 360
consensus_12810#1      ACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTG 359
consensus_12810#2      ACAAGGAAACTAATCGCTCCAAAGGTTATGCTTTTGCTGAGTATGAAACAGAGGAGATTG 274
                       ************************************************************

consensus_12810#0      CCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGAT 420
consensus_12810#1      CCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGAT 419
consensus_12810#2      CCCAGTATGCTGTTAAGCTATTTTCTGGCCTTGTTCGTCTTCATAATAGAACACTTAGAT 334
                       ************************************************************

consensus_12810#0      TTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAG 480
consensus_12810#1      TTGCGATTTCTGGACAAGACAAGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAG 479
consensus_12810#2      TTGCGATTTCTGGACAAGACAGGCAATCTTCTAATGGAAATATTCCTGTAACACCTAAAG 394
                       ********************* **************************************

consensus_12810#0      TGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCAT 540
consensus_12810#1      TGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCAT 539
consensus_12810#2      TGAACCCTATACCGCCACCAAAGCCGGCTCAGCTAATGAGATCTAGTGATACTCCCGCAT 454
                       ************************************************************

consensus_12810#0      CGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTG 600
consensus_12810#1      CGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTG 599
consensus_12810#2      CGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGT- 513
                       *********************************************************** 

consensus_12810#0      CGCACTCTGAGGGTGAGAGAGTTTCCTTATTCCTTTCAAAATATAAGACACTGTATGGTT 660
consensus_12810#1      CGCACTCTGAGG------------------------------------------------ 611
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TTTAATTAAATCTTACAATTCCCTTTTCTTGTCCAGCACCGAGTGGGATATCGAGTAGAG 720
consensus_12810#1      ------------------------------------CACCAAGTGGGATATCGAGTAGAG 635
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      GATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACG 780
consensus_12810#1      GATTAAGCAATGGTACATACGAATATAGTAGACGCGTATTTGGTTCTGTTCTGAATGACG 695
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCC 840
consensus_12810#1      TTAGCCGTCGTACTGACAGGCAACCAATTCCATACCCGTCCTACTAGCATATTGAGCTCC 755
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      AGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCGATGTCAATGTTNGNTGTNTCAGC 900
consensus_12810#1      AGGGAAGAACATGGTATGCTAACAGATTAGCCCAGCG----------------------- 792
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      CCTTCTGTAATATCATCTATGTATTCACCAATACATGCATGTAAATATGTCTTATGGCTT 960
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      AGTCGTGTAGGCCGATGCTTATCTTTTCCATTGTTCTGTTCTCAACATTGTAGTCAGACT 1020
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TGTGCCCGCTGGTTATCTCCCATGTCATGTCCTAGTGATAGCATCATGCCTCCACTAATG 1080
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      CAGCTGTACCAAGACTTAGTCTAATTGCAGGGATGGCTGGCAATTTGTGTTTTAATATTT 1140
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      AATCTAGTGATGTTTGTTGTTGCTTCTGTGTTCCAGTGTGACCAAGTTTGTGCTTGAGTT 1200
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      CTTGGTGTATTTTGTTCTTCTCGTCAAAGTTGGTTTGTATTATGTTGGGCATCACAAAAG 1260
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      ATAATGTCATTGTCTACTATTTAAAAAACAGTGCAAATCTACTGAAATTTAATGTTTATT 1320
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TATGAATATGAAAGATGTTTTAGATGACTTGTTCGTCTTGAGCAATATTTTTATGGAAGT 1380
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      CACAGGCATTCATATGCATCATCACTCTGGATCCAGCATTGGCCGCCTCTGGCTCTGGAG 1440
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TGATGGAGACGTGCATTTCCTATTGCTTGAGTGCTCAGCTGCAACATCAATCTTCTGGTA 1500
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TGCCTACTTGCTCATCTTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTT 1560
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      GGAAATATTGCTGTGAGTCCAAGGATGCCATTGATGCCAAATTATTCAGTTGGAAATATT 1620
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TATAATGTCGAACAACAATTCAAGATGGACTTTGCCTGTCATGCAAGCTTGCTACTTGTT 1680
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TTTTTGACCCTGTGTGCAGTCAGTTTGTGAAGAACCCTACTGAAGGTGGGTAATTTTGAT 1740
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      GCGGAAGATAGTGCGACTTCTGAGCTGCACCGCCTGCACAGATCTTAGGTGAGCTACTGT 1800
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TTAAATTGTGGAGTTTGTAAGCATCAGGCGGTTTATCTTGTGAAGTTTTGCTTCATAGAC 1860
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      TCGACATCCAGGATTCAGGAACGATAAGAATTGAACCTTTCCTTCCTGCTTTCTCAGATC 1920
consensus_12810#1      ------------------------------------------------------------
consensus_12810#2      ------------------------------------------------------------
                                                                                   

consensus_12810#0      GTCTTTTTTCATAATTAGCT 1940
consensus_12810#1      --------------------
consensus_12810#2      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)