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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 718 fasta sequence
[GATGNGGCGGTGGTGCGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTG-ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT-GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT-CCATG-AAGTTTCGATTCAGAG-TCATGAATGACGGCCAGGTCCGCAGGTGGA-GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA-ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAAGCAAAAAAAAAAA]
[+] EMBL C28081 [GATGNGGCGGTGGTGCGCCG CG CGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTNTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTNTCCTCCCGCCACCACCTCTTG ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGNCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTNCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCA GTGGAGGAGCCGGNAA ]
[+] EMBL AU067884 [ GGTGCGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTGNACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGNAATGGGCAGACGCAGNAGGTGNGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCANGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTCCCATGAAAGTTTCGATTCAGAGTTCAT ]
[+] EMBL AK121742 [ GCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTG ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACT ]
[+] EMBL CA755274 [ CCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATTGCCCTTCTCCTCCCGCCACCACCTCTTG ACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCNAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCNAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATNAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTG ]
[-] EMBL BU673696 [ GGGTCTCCATCCCTCCTCCCCACCGCCGATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGACGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTGGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTATTGTGCTATGTAC ATATTCAGC ATAGTGGGATAACT ]
[+] EMBL BI804576 [ ATGCAAT GGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGACGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCACATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTATTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAA ]
[-] EMBL AU225937 [ AGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCT CCATG AAGTTTCGATTCAGAG TCATGAATGACGGCCAGGTCCGCAGGTGGA GAGCCGGCAAGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCATTAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCAGGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCA ATTGTTGTTTGATGCATTCTCATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAgcggc ]
[+] EMBL AU181180 [ CAGCTAGGNAATCAGGGCANACATGATGGAGTTTGGCATGCGAGACAAATTNATGAGTACTGAGTGCCAACTACTGCATTCCTCACACTGATTTGNAATGTTATTTTTTTCCCA ATTGTTGTTTNATGCATTCTCATCTGGTTTTGTTTTNTGCACAATCTGGCTGATAAAGCCCNCCCGTCTTGTGCTATGNACAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[GATNCNGCNGTNGTNCGCNGNCNCNTNCGGCCTCGAGCACGNCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCATTGCCTTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAATGGCAGACGCGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGNNCACGGACGNCCACCACCTTCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTTCATGAAGTTTCGATTCAGAGTCATGAATGACGGCCAGGTCCGAGGTTGGAGAGCCGGNAAGNGCACAATGTTAACTAAGTTGAAGGAAGCGAAAAGAGGATTCGGAGCTTAATTAGTGANTTAGTTTATGAAA]
[+] EMBL C93504 [GATNCNGCNGTNGTNCGCNGNCNCNTNCGGCCTCGAGCACGNCCTCCTCTCCTCCTCTGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCATTGCCTTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCCACCGCCGATGCAATGGCAGACGCGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCGCGNNCACGGACGNCCACCACCTTCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTTCATGAAGTTTCGATTCAGAGTCATGAATGACGGCCAGGTCCGAGGTTGGAGAGCCGGNAAGNGCACAATGTTAACTAAGTTGAAGGAAGCGAAAAGAGGATTCGGAGCTTAATTAGTGANTTAGTTTATGAAA]
consensusID : consensus_12831#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[CGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCNNCCCTNCCCACCGCCCTCTTCCGGCGCACCTCANNCCCANCCCCAGGCCATTGCCCTTNTNCNGCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATNCCTCCTNCCCACCGNCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGNCGTCAAGGACAGATCGCGCGNGNCACGGACGNCNACCANCTNCAAGGTCAAGAAGTACAAGATCAAGNCCCGGTTCTTCATGAAGTTTTNGATTNAGAGTCATGAATGACGGGCAGGTCCGAAGTGGAGAGCCGGNAAGNGCACAATGGTTAACTTAAGTGGAAGGAAGTGAAAAGAGGATTTTGGAAGCTTGAATTAGTGAATTAG]
[+] EMBL OSC11601 [CGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTCTGTCTCCNNCCCTNCCCACCGCCCTCTTCCGGCGCACCTCANNCCCANCCCCAGGCCATTGCCCTTNTNCNGCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATNCCTCCTNCCCACCGNCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGNCGTCAAGGACAGATCGCGCGNGNCACGGACGNCNACCANCTNCAAGGTCAAGAAGTACAAGATCAAGNCCCGGTTCTTCATGAAGTTTTNGATTNAGAGTCATGAATGACGGGCAGGTCCGAAGTGGAGAGCCGGNAAGNGCACAATGGTTAACTTAAGTGGAAGGAAGTGAAAAGAGGATTTTGGAAGCTTGAATTAGTGAATTAG]
consensusID : consensus_12831#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence
[TGCGGCGGTGGTGCGCCGCGCGGCCTCGGCCTCGGTCGCCGCCTCCTCTCCTCCTCTGTCTCCGGCCCTNCCCACCGCCCTCTTCCGGCGCACCTNANGCCCANNCCCAGGCCATTGCCCTTNTANNNCNGCCACCACCTNTTGACTNCTNCTCTGGGTCTCCANNCNTANNNNNNACNGNCGATGCAATGGCAGACGCAGCAGGTGCGNCACTTNGNCGNCAAGGACAGATCGTGNGNGNNANGGACGTCNATNANGTTCAAGGTNAAGAAGTACAAGATNAAGNGGTGGNTGTNATGAAGTTTNGATTNAGAG]
[+] EMBL OS0988A [TGCGGCGGTGGTGCGCCGCGCGGCCTCGGCCTCGGTCGCCGCCTCCTCTCCTCCTCTGTCTCCGGCCCTNCCCACCGCCCTCTTCCGGCGCACCTNANGCCCANNCCCAGGCCATTGCCCTTNTANNNCNGCCACCACCTNTTGACTNCTNCTCTGGGTCTCCANNCNTANNNNNNACNGNCGATGCAATGGCAGACGCAGCAGGTGCGNCACTTNGNCGNCAAGGACAGATCGTGNGNGNNANGGACGTCNATNANGTTCAAGGTNAAGAAGTACAAGATNAAGNGGTGGNTGTNATGAAGTTTNGATTNAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12831#0 GATGNGGCGGTGGTGCGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTC 60
consensus_12831#1 GATNCNGCNGTNGTNCGCNGNCNC---NTNCGGCCTCGAGCACGNCCTCCTCTCCTCCTC 57
consensus_12831#2 ---------------CGCCGCCGCCGGCCTCGGCCTCGGCCGCCGCCTCCTCTCCTCCTC 45
consensus_12831#3 --TGCGGCGGTGGTGCGCCGC-GC-GGCCTCGGCCTCGGTCGCCGCCTCCTCTCCTCCTC 56
*** * * ******** * * ***************
consensus_12831#0 TGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGCCATT 120
consensus_12831#1 TGTCTCCGCCCCTGCCCACCGCCCTCTTCCGGCGCACCTCATCCCCAGCCCCAGGC-ATT 116
consensus_12831#2 TGTCTCCNNCCCTNCCCACCGCCCTCTTCCGGCGCACCTCANNCCCANCCCCAGGCCATT 105
consensus_12831#3 TGTCTCCGGCCCTNCCCACCGCCCTCTTCCGGCGCACCTNANGCCCANNCCCAGGCCATT 116
******* **** ************************* * **** ******* ***
consensus_12831#0 GCCCTTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCC 180
consensus_12831#1 GCC-TTCTCCTCCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATCCCTCCTCCCC 175
consensus_12831#2 GCCCTTNTNCNGCCGCCACCACCTCTTGACTCCTCCTCTGGGTCTCCATNCCTCCTNCCC 165
consensus_12831#3 GCCCTTNTANNNCNGCCACCACCTNTTGACTNCTNCTCTGGGTCTCCANNCNTANNNNNN 176
*** ** * * ********** ****** ** ************* * *
consensus_12831#0 ACCGCCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCG 240
consensus_12831#1 ACCGCCGATGCAATGGCAGACGC-GCAGGTGCGCCACTTCGCCGCCAAGGACAGATCGCG 234
consensus_12831#2 ACCGNCGATGCAATGGCAGACGCAGCAGGTGCGCCACTTCGNCGTCAAGGACAGATCGCG 225
consensus_12831#3 ACNGNCGATGCAATGGCAGACGCAGCAGGTGCGNCACTTNGNCGNCAAGGACAGATCGTG 236
** * ****************** ********* ***** * ** ************* *
consensus_12831#0 CGCGCCACGGACGCCCACCACCTCCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTC 300
consensus_12831#1 CGNNC-ACGGACGNCCACCACCTTCAAGGTCAAGAAGTACAAGATCAAGCCCCCCTCCTT 293
consensus_12831#2 CGNGNCACGGACGNCNACCANCTNCAAGGTCAAGAAGTACAAGATCAAGNCCCGGTTCTT 285
consensus_12831#3 NGNGNNANGGACGTCNATNANGTTCAAGGTNAAGAAGTACAAGATNAAGNGGTGGNTGTN 296
* * ***** * * * * ****** ************** *** *
consensus_12831#0 CATGAAGTTT-CGATTCAGAGTCATGAATGACGGCCAGGTCCGCAGGTGGAGAGCCGGCA 359
consensus_12831#1 CATGAAGTTT-CGATTCAGAGTCATGAATGACGGCCAGGTCCGAGGTTGGAGAGCCGGNA 352
consensus_12831#2 CATGAAGTTTTNGATTNAGAGTCATGAATGACGGGCAGGTCCGAAG-TGGAGAGCCGGNA 344
consensus_12831#3 -ATGAAGTTT-NGATTNAGAG--------------------------------------- 315
********* **** ****
consensus_12831#0 AGCGCCACAATGCTCACCTCAAGTCGAAGGAAGCGAAAAGAAGACTTCGGAAGCCTGCAT 419
consensus_12831#1 AGNGC-ACAATGTTAAC--TAAGTTGAAGGAAGCGAAAAGAGGA-TTCGGAG--CTTAAT 406
consensus_12831#2 AGNGC-ACAATGGTTAACTTAAGTGGAAGGAAGTGAAAAGAGGATTTTGGAAGCTTGAAT 403
consensus_12831#3 ------------------------------------------------------------
consensus_12831#0 TAGTGCACTTAGCTTATGCAAAAGTGATAAAGAAGCTCAACTTCTGCAGCTAGGAAATCA 479
consensus_12831#1 TAGTG-ANTTAGTTTATGAAA--------------------------------------- 426
consensus_12831#2 TAGTG-AATTAG------------------------------------------------ 414
consensus_12831#3 ------------------------------------------------------------
consensus_12831#0 GGACAGACATGATGGAGTTTGGCATGCGAGACAGATTGATGAGTACTGAGTGCCAACTAC 539
consensus_12831#1 ------------------------------------------------------------
consensus_12831#2 ------------------------------------------------------------
consensus_12831#3 ------------------------------------------------------------
consensus_12831#0 TGCATTCCTCACACTGATTTGAAATGTTATTTTTTTCCCAATTGTTGTTTGATGCATTCT 599
consensus_12831#1 ------------------------------------------------------------
consensus_12831#2 ------------------------------------------------------------
consensus_12831#3 ------------------------------------------------------------
consensus_12831#0 CATCTGGTTTTGTTTTCTGCACAATCTGGCTGATAAAGCCCACCCGTCTTGTGCTATGTA 659
consensus_12831#1 ------------------------------------------------------------
consensus_12831#2 ------------------------------------------------------------
consensus_12831#3 ------------------------------------------------------------
consensus_12831#0 CAATATTCAGCATAATAGTGGGATAACTGCTGCTGGTGAAGAAAAAGCAAAAAAAAAAA 718
consensus_12831#1 -----------------------------------------------------------
consensus_12831#2 -----------------------------------------------------------
consensus_12831#3 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||