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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1632 fasta sequence
[TTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC-GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATA-TGGTTCAGGAAACATTCCCT-CGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA-ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTTTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTTTAACCGGCTTTTA-ATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATCTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCGTTAGTTATATGATATACTACTACTTGTCTTAGCAAAAAAAAAAAAAAAAAAAG]
[+] EMBL CB641760 [TTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAG ]
[+] EMBL CB664894 [ CTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGAGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAA ]
[+] EMBL AY224589 [ GGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAGGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCACAACAATATGAC GAGAAAAATATACGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATA TGGTTCAGGAAACATTCCCT CGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCA ]
[+] EMBL CF307539 [ catgGACTGAGGAGTAGA AAGGAGAAGGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATTATATCTAAAGATAAAAAGGAAATT AGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATANTGGTTCAGGAAACATTCCCTNCGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCANACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAAC AATCGACGGTATTCATGATCTAATTTCAATGGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGG ]
[-] EMBL CB664895 [ AGATAAAAAGGGAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCAGACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCTGCAAGACCAATTTGTAGGTATGCAAAAGTTGATACAAAGAAATGAACAGCTATA TGGTTCAGGAAACATTCCCT CGGGGGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATTTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTTTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTTTAACCGGCTTTTAGATCTGTTCCGCC ]
[-] EMBL CB647773 [ ATACAAAGAAATGAACAGCTATA TGGTTCAGGAAACATTCCCT CGGGTGGAGTTGCATTACCATTTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTCTAACCGGCTTTTA ATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATCTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCGTTAGTTATATGATATACTACTACTTGTCTTAGCA ]
[-] EMBL CB641761 [ TTATCCTTGTTCAGACACGGCCTCATGCA ACTGTGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTTTTGTGGAGAAGAACAAATCGACGGTATTCATGATTTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCCCCCCCTATTCCAGGAATACTGAAAGGGGGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTTTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGGGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTTTGATTGGTAGAGTGGGGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTTTAACCGGCTTTTA ATTTGTTCCGCCATGGTTGAGAAAAGACGTTTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATTTGAGTGAAATTTCAGCCTTTTGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCCTTAGTTATATGATATACTACTACTTGTCTTAAAAAAAAAAAAAAAAAAAAAAG]
consensusID : consensus_12833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1022 fasta sequence
[GGCGCGGCGCATTCGGCCTCCACCAGTGGCGGCGGCGGGGGGAGCGAGGGCTCCCCCACCGGCCGCGCCGCGCCGGGCATGCAGGGCGGCGGCAGCGCCGCCACGCCCGCCGCCTCGGCCTCCGCGTCCACGCCGGCCAGCGAGACCACCGTCGCCCGCCGCCTCGACGGCCTCGACATCCAGGGCGACGACGCGCCCTCGTCGCAGCCCGCCACGAGCAAGAAGAAAAAAAGGGGGCCTGGAACACGTGCAACGGGCCCTGACAAGGGTGGCCGTGGATTGCGCCAATTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACAACCTACAACGAGGTGGCAGATGAGCTTGTAGCTGAGTTTGCAGACCCCAACAATAATTTTGCATCACCTGATCCTGACAACCCTAACACACCACAATTTGATGAGAAAAATATACGACGAAGGGTTTATGATGCATTGAATGTCCTGATGGCTATGGATATTATATCTAAGGATAAAAAGGAAATTCAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAAGACAGAGATCATCGGACTGAAAGGTAGGATCGACAAGAAAAATGCATATTTGCAGGAGTTAGAAGATCAATTTGTAGGTCTTCAAAACTTGGCACAGCGAAACGAGCAGCTTTATGGTTCAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCATTTATATTGGTGCAGACACGTCCTCATGCTACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTGGTGCATTTTGATTTCAATAGCACTCCATTTGAACTGCATGACGATTCCTTTGTACTGAAAGCATTGGGGTTCTCTGGCAAAGAACCAGATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAACCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCA]
[+] EMBL AY224551 [GGCGCGGCGCATTCGGCCTCCACCAGTGGCGGCGGCGGGGGGAGCGAGGGCTCCCCCACCGGCCGCGCCGCGCCGGGCATGCAGGGCGGCGGCAGCGCCGCCACGCCCGCCGCCTCGGCCTCCGCGTCCACGCCGGCCAGCGAGACCACCGTCGCCCGCCGCCTCGACGGCCTCGACATCCAGGGCGACGACGCGCCCTCGTCGCAGCCCGCCACGAGCAAGAAGAAAAAAAGGGGGCCTGGAACACGTGCAACGGGCCCTGACAAGGGTGGCCGTGGATTGCGCCAATTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACAACCTACAACGAGGTGGCAGATGAGCTTGTAGCTGAGTTTGCAGACCCCAACAATAATTTTGCATCACCTGATCCTGACAACCCTAACACACCACAATTTGATGAGAAAAATATACGACGAAGGGTTTATGATGCATTGAATGTCCTGATGGCTATGGATATTATATCTAAGGATAAAAAGGAAATTCAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAAGACAGAGATCATCGGACTGAAAGGTAGGATCGACAAGAAAAATGCATATTTGCAGGAGTTAGAAGATCAATTTGTAGGTCTTCAAAACTTGGCACAGCGAAACGAGCAGCTTTATGGTTCAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCATTTATATTGGTGCAGACACGTCCTCATGCTACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTGGTGCATTTTGATTTCAATAGCACTCCATTTGAACTGCATGACGATTCCTTTGTACTGAAAGCATTGGGGTTCTCTGGCAAAGAACCAGATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAACCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCA]
consensusID : consensus_12833#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[TCATTTCTTTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCATCACCAATTATTTCTTAAGTCAGTTGTATGCTCACTTTGTGTTAAATGCAGCAACAATATGACGAGAAAAATATACGGAGAACGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATT]
[+] EMBL CB647772 [TCATTTCTTTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTCCCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCCGGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAGCAAGAAGAAGAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAAGGTGGCAGGGGGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAACAGCATTTTGCCACCAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCATCACCAATTATTTCTTAAGTCAGTTGTATGCTCACTTTGTGTTAAATGCAGCAACAATATGACGAGAAAAATATACGGAGAACGGTTTATGATGCTCTGAATGTTCTGATGGCTATGGAGATT]
consensusID : consensus_12833#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[TGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTCTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAAAAAAAAAAAA]
[-] EMBL CF307540 [TGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACTTTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTGTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAGCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGCTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTTTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGCTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAACTTCTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTAAAAAAAAAAAA]
consensusID : consensus_12833#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[GGCCCTGGCCAGACCTGTATCACTCCCCGAGGAACTTTTAACCGGGTTTTAATTTGTTCCCCCCAGGTTGAGAAAAAAAGTTTTTTAACGTCAAGGAATTGTTTAAAGCCTTTTGAAGTAGTTAGCCTTTGATTTGAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF315088 [GGCCCTGGCCAGACCTGTATCACTCCCCGAGGAACTTTTAACCGGGTTTTAATTTGTTCCCCCCAGGTTGAGAAAAAAAGTTTTTTAACGTCAAGGAATTGTTTAAAGCCTTTTGAAGTAGTTAGCCTTTGATTTGAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TTCTCTCCCTCCAATTTGCCCCCTCTTTGTCGTTTTAGGGTTTCCGCGCTCCAACTCCTC 60
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 CCCAATTCTGGTCCCCGATTCGCGCGATCTCGGCCACCCATGGTCTCCGGCGTCGCCCAC 120
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 CGCCCGGACGACGACGGCGGGCGCGCCGCCTCGACGTTCCAGCGCCCGCCGCAGCCGGCC 180
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ---------------GGCGCGGCGCATTCGGCCTCCACCAGTGGCG---GCGGCGGGGGG 42
consensus_12833#2 ----------------TCATTTCTTTCTCTCCCTCCAATT-TGCCC---CCTCTTTGTCG 40
consensus_12833#0 GGCGCGCGGCCGTCCCTGGCCACGCCGCCGCCCTCGGGCGGAGCGCAATCCGCTTCGACG 240
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 AGCGA-GGGCTCCCCCACCGGCCGCGCCGCGCCGG-GCATGCAGGGCGGCGGCA-GCGCC 99
consensus_12833#2 TTTTA-GGGTTTCCGCGCTC-CAACTCCTCCCCA----ATTCTGGTCCCCGATTCGCGCG 94
consensus_12833#0 AGCGGCGGGAGCGCGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCA 300
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 GCCACGCCCGCCGCCTCGGCCTCCGCGTCCACGCCGGCCAGCGAGACCACCGTCGCC-CG 158
consensus_12833#2 ATCTCGGCCACC-CATGGTCTCCGGCGTCGCCCACCGCCCGGACGACGACGGCGGGCGCG 153
consensus_12833#0 GGCATGGCGGCGGGGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTC----CT 356
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 CCGCCTCGACGGCCTCGACATCCAGGGCGACGACGCGCCCTCGTCGCAGCCCGCCACGAG 218
consensus_12833#2 CCGCCTCGACG-TTCCAGCGCCC---GCCGCAGCCGGCCGGCG-CGCGGCCGTCCCTGGC 208
consensus_12833#0 CCGCCTCAACGACCTTGACATCCACGGCGACGATGCGCCTTCCTCACAGGCTCCAACGAG 416
consensus_12833#3 ---------------TGGAAGTTGAAATATCAGAAGATATGCAACTTGTACATTTTGACT 45
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 CAAGAAGAAAAAAAGGGGGCCTGGAACACGTGCAACGGGCCCTGACAAG-GGTGGCCGTG 277
consensus_12833#2 CACGCCGCC-------GCCCTCGGGCGGAGCGCAATCCGCTTCGACGAGCGGCGGGAGCG 261
consensus_12833#0 CAAGAAGAA------GAAGAGAGGAGCACGAGCAGTTGGTCCTGACAAA-GGTGGCAGGG 469
consensus_12833#3 TTAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTT 105
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 GATTGCGCCAATTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGCAAAGGGAGAACAACCT 337
consensus_12833#2 CGGGCTCCCCGTCCAGCCGCAGCGAGCAGCATGTCCCCGCAGCCGCAGGCATGGCGGCGG 321
consensus_12833#0 GGCTGCGCCAGTTTAGTATGAAAGTTTGTGAGAAAGTTGAAAGTAAAGGGAGAACAACAT 529
consensus_12833#3 GTGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAA 165
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ACAACGAGGTGGCAGATGAGCTTGTAGCTGAGTTTGCAGACCCCAAC---AATAATTTTG 394
consensus_12833#2 GGGCGGCGGCGGCCTCTACTCCGATTAGTGAGAATACCTTCCTCCGCCTCAACGACCTTG 381
consensus_12833#0 ACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAAT---AACAGCATTT 586
consensus_12833#3 GCATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAG 225
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 CATCACCTGATCCTGACAACCCTAACACACCACAATTTGATGAGAAAAATATACGACGAA 454
consensus_12833#2 ACATCCACGGCGACGATGCGCCTTCCTCAC-AGGCTCCAACGAGCAAGA-AGAAGAAGAG 439
consensus_12833#0 TGCCACCAGATCCGGATAATCCCAATGCACAACAATATGACGAGAAAAATATACGGAGAA 646
consensus_12833#3 CTAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGC 285
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 GGGTTTATGATGCATTGAATG-----TCCTGATGGCTATGGATATTATATCTAAGGATAA 509
consensus_12833#2 AGGAGCACGAGCAGTTG---G-----TCCTGACAAAGGTGGC-----------AGGGGGC 480
consensus_12833#0 GGGTTTATGATGCTCTGAATG-----TTCTGATGGCTATGGAGATTATATCTAAAGATAA 701
consensus_12833#3 ATTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTT 345
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 AAAGGAAATTCAGTGGAAGGGCTTGCCTCGGACAAGTATGAGCGATGTTGAAGAATTGAA 569
consensus_12833#2 TGCGCCAGTTTAGTATGAAAGTTTGT----GAGAAAGTTGAAAG----TAAAGG---GAG 529
consensus_12833#0 AAAGGAAATTCAGTGGAAGGGGTTGCCTCGAACCAGTATAAATGATATTGAAGATTTGCA 761
consensus_12833#3 TTTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACG 405
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 GACAGAGATCATCGGACTGAAAGGTAGGATCGACAAGAAAAATGCATATTTGCAGGAGTT 629
consensus_12833#2 AACAACATACAACGAGGTGGCAGATGAACTTGTTGCCGAATTTGCAGATCCCAATAA--C 587
consensus_12833#0 GACGGAACTTGTAGGACTGAAAAGTAGGATTGAGAAGAAAAATACATATTTGCAGGAGCT 821
consensus_12833#3 CTGCAGTCTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGA--- 462
consensus_12833#4 ---------------------------GGCCCTGGCCAGACCTGTATCACTCCCCGA--- 30
* * * *
consensus_12833#1 AGAAGATCAATTTGTAGGTCTTCAAAA-CTTGGCACAGCGAAACGAGCAGCTTTATGGTT 688
consensus_12833#2 AGCATTTTGCCAC-CAGATCCGGATAATCCCAATGCAGTTGAGAAATGACTTGCCTGCAT 646
consensus_12833#0 GCAAGACCAATTTGTAGGTATGCAAAA-GTTGATACAAAGAAATGAACAGCTATATGGTT 880
consensus_12833#3 -GTAACTTCTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAAC 521
consensus_12833#4 -GGAACTTTTAACCGGGTTTTAATTTGTTCCCCCCAGGTTGAGAAAAAAAGTTTTTTAAC 89
* * * * * * *
consensus_12833#1 CAGGAAATGCTCCTTCAGGAGGAGTGGCATTGCCA---TTTATATTGG-TGCAGACACGT 744
consensus_12833#2 CACCAATTATTTCTTAAGTC--AGTTGTATGCTCAC--TTTGTGTTAAATGCAGCAACA- 701
consensus_12833#0 CAGGAAACATTCCCTCGGGTGGAGTTGCATTACCA---TTTATCCTTG-TTCAGACACGG 936
consensus_12833#3 GTCATGTAATTGTTTAAAGCATTTTGAAGTAGTTA-----------------AAAAAAAA 564
consensus_12833#4 GTCAAGGAATTGTTTAAAGCCTTTTGAAGTAGTTAGCCTTTGATTTGAGGTGAAAAAAAA 149
* * * * * * *
consensus_12833#1 CCTCATGCTACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTG-GTGCATTTTGATTT 803
consensus_12833#2 ----ATATGACGAGAAAAATATACGGAGAACGGTTTATGATGCTCTGAATGTTCTGATGG 757
consensus_12833#0 CCTCATGCAACTGTGGAAGTTGAAATATCAGAAGATATGCAACTT-GTACATTTTGACTT 995
consensus_12833#3 AAA--------------------------------------------------------- 567
consensus_12833#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 186
consensus_12833#1 CAATAGCACTCCATTTGAACTGCATGACGATTCCTTTGTACTGAAAGCATTGGGGTTCTC 863
consensus_12833#2 CTATGGAGATT------------------------------------------------- 768
consensus_12833#0 TAATAGCACACCATTTGAGTTGCATGATGACTCATTTGTACTGAAAGCAATGAGTTCTTG 1055
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 TGGCAAAGAACCA---GATGATACGCAAGCCTGGGTTGGAAATGGAGGTGAGTGCTCAAC 920
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TGGAGAAGAACAAATCGACGGTATTCATGATCTAATTTCAAATGGAGGTGAGAGCTCAAG 1115
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 CACACC---TATCTAT---CATCAATCACCCCAAGTTGCGAGGCCAAACGG------AGT 968
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 CATGCCAAATATTTATAGGCAGCAAGTGCAGCAACCTGCAAGATCAACTAATGGTACAGC 1175
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 TAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCA------ 1022
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TAGATTGCCAAGCTCACCCCCTATTCCAGGAATACTGAAAGGGCGAGTGAAGCACGAGCA 1235
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TTAGTGTAGTGTGTTTGTTGATTGTTGTCTGGCGTGTTTGGTTTATTATTTTTTATTTTT 1295
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TTGTGTAAATGGCCTGTAAATTAGTGGGCATTGGAAAAGTAGTTTATTCCGATTTAACGC 1355
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TGCAGTTTGATTGGTAGAGTGGCGGGTGCCCTGACCAGACCTGTATCACTCCCCGAGTAA 1415
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 CTTTTAACCGGCTTTTAATCTGTTCCGCCATGGTTGAGAAAAGACGTCTTTTAACGTCAT 1475
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 GTAATTGTTTAAAGCATTTTGAAGTAGTTAGCATTTGATCTGAGTGAAATTTCAGCCTTT 1535
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 ------------------------------------------------------------
consensus_12833#2 ------------------------------------------------------------
consensus_12833#0 TGCATGCTTATTGTAGGCATATACATTTGTATTGGATATTTGCGTTAGTTATATGATATA 1595
consensus_12833#3 ------------------------------------------------------------
consensus_12833#4 ------------------------------------------------------------
consensus_12833#1 -------------------------------------
consensus_12833#2 -------------------------------------
consensus_12833#0 CTACTACTTGTCTTAGCAAAAAAAAAAAAAAAAAAAG 1632
consensus_12833#3 -------------------------------------
consensus_12833#4 -------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||