Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12835 cluster # 12835       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12835#0 length = 1304 sequences # 9  
consensus_12835#1 length = 394 sequences # 1  
consensus_12835#2 length = 288 sequences # 1  

consensusID : consensus_12835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1304
fasta sequence
                              [CCATCCCAGCCGCCACGCCCACGCGTCGCAAGCCGCCGCCAGTCGACGCACGCGCCGACTGCGCCGTCGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCTGCCCAGCCCGCTAGCCGCCTGCGCGCGCCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAGACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCCACAGGCCACAGCCGGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTCCGCACCTCGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTCGCGGCCTTCGGCCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGTGTAGCTGCTTATGCCAAAGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACT-ACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGCTATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTCTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA-CCAAAAGTGAAACAATTCCGTTCGGAGATCACACGTTTGTGCATTCTAATCTGGTGGCTGGCCAACCAACACAGCCTCTTGAACAAAGGGCAGTTAGTTATTATATTCCTTCCTTTTGGAATCACCGAAACGCGTAATACATA]

[+] EMBL AK120575             [CCATCCCAGCCGCCACGCCCACGCGTCGCAAGCCGCCGCCAGTCGACGCACGCGCCGACTGCGCCGTCGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCTGCCCAGCCCGCTAGCCGCCTGCGCGCGCCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAGACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCCACAGGCCACAGCCGGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTCCGCACCTCGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTCGCGGCCTTCGGCCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGTGTAGCTGCTTATGCCAAAGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACT ACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGCTATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTCTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA CCAAAAGTGAAACAATTCCGTTCGGAGATCACACGTTTGTGCATTCTAATCTGGTGGCTGGCCAACCAACACAGCCTCTTGAACAAAGGGCAGTTAGTTATTATATTCCTTCCTTTTGGAATCACCGAAACGCGTAATACATA]
[+] EMBL CB641427             [                         TCGCACTTTGCCGCCAGTCGACGCACGCGCCGACTGCGCCGTCGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCTGCCCAGCCCGCTAGCCGCCTGCGCGCGCCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAGACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCCACAGGCCACAGCCGGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTCCGCACCTCGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTCGCGGCCTTCGGCCTCGCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGTGTAGCTGCTTATGCCAAAGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACTAACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGAGGACCTTCCATTTTGGCTTGCACATGGGCTGCTGGCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB655306             [                                 CGCCGCCTGTCCACGCACGCGCCGACTGCGCCGTCGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCTGCCCAGCCCGCTAGCCGCCTGCGCGCGCCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAGACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCCACAGGCCACAGCCGGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTCCGCACCTCGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTCGCGGCCTTCGGCCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGTGTAGCTGCTTATGCCAAAGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGAGAGTGCAAATGGTGTTGGACT ACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACCTGGGCTGCTGTCTCTGGAAAAAGCAGATTCAATAAATGTACCTCCTTGCTTCACCCAAAAAACCCGGAAGGAGATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CA762044             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTNTTCAAGTGAGTGCAAATGGTG TGGACT ACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGCTATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATTTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTTTGCACCTTGAACCATGCTTTAGGTTTTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA CCAAAAATGAAACAATTCCGTTCGGAGATCAaaaaaaaa                                                                                                        ]
[+] EMBL AK059326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACT ACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGCTATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTCTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA CCAAAAGTGAAACAATTCCG                                                                                                                           ]
[-] EMBL CB655308             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTGTTGGACT ACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACTTTCCATTTTGGCTTGCACATGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGCTATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTCTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA CCAAAAGTGAAACAATTCCGTTCGGAGATCACACGTTTGTGCATTCTAATTTAAAGGCTGGCCAACCAACACAGCCT                                                                  ]
[-] EMBL CB655307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCAAGCTGATGCAGCGTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGGTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGGTATGCATTCACTAGTAGGTGCAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGTCCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTGTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGGTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA CCAAAAGTGAAACAATTCCGTTCGGAGATCACACGTTTGTGCATTCTAATCTGGTGAGGGGCCAACCAACACAGCC                                                                   ]
[-] EMBL CB641428             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGATAATAAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAACCTCCCTGATGGACCTTCTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTCCTTGAGCTGATGTATGTATACTTCATTAATATGTCGGTGTAATTTAAGAGGCAAAAGT                                                                                                                                       ]
[+] EMBL C97725               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tnAGCAAGTCACACAGCTCTCCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGTAGGAAAAGGAAGNCAAAACTGCCTGATGGACCTTCTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGA CCAAAAGTGAAACAATTCCGTTCGGAGATCAaaaaaaa                                                                                                         ]


>consensus_12835#0 CCATCCCAGCCGCCACGCCCACGCGTCGCAAGCCGCCGCCAGTCGACGCACGCGCCGACT GCGCCGTCGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCT GCCCAGCCCGCTAGCCGCCTGCGCGCGCCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAG ACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCCACAGGCCACAGCC GGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTC CGCACCTCGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTC GCGGCCTTCGGCCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGC AACGTGTAGCTGCTTATGCCAAAGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGT TTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCT ATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACTACTAGATCCTGGCGCTGAA AGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATGGGCTG CTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGG AAGGAGATCCAAGCTGATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTAT GAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGC TATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCATGATG ACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAATCTGCT AGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCG TCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTCTGCACCTTGAACC ATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTTCATTA ATATGTCGCTGTAAGAGAAGACCAAAAGTGAAACAATTCCGTTCGGAGATCACACGTTTG TGCATTCTAATCTGGTGGCTGGCCAACCAACACAGCCTCTTGAACAAAGGGCAGTTAGTT ATTATATTCCTTCCTTTTGGAATCACCGAAACGCGTAATACATA



consensusID : consensus_12835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence
                              [GGCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACTACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATTGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGAGATCCAAGCTNNATGCAGCCTGGTGGTTGNTTTGAGGATTCGTTGCCCTTTACTTTCTA]

[-] EMBL C99169               [GGCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACTACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATTGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGAGATCCAAGCTNNATGCAGCCTGGTGGTTGNTTTGAGGATTCGTTGCCCTTTACTTTCTA]


>consensus_12835#1 GGCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGCAACGGGTGAC AGAAATCAAGAATAAGCAATAGTATTCTGTTTGCTTGGTGCAATGCCTGGTTATTACGAC ATCGATGATATCCTGATGGAGGAGGAGCCTATTTCGGTAGTTTTTCAAGTGAGTGCAAAT GGTGTTGGACTACTAGATCCTGGCGCTGAAAGAAACAGTGTTGAAAAGGGTGCTAAGGTG GACCTTCCATTTTGGCTTGCACATTGGGCTGCTGTCTCTGGAACAAGCAGTTTCAATAAA TGTACCTCCTTGCTTCACCCAGAAAACCCGGAAGAGATCCAAGCTNNATGCAGCCTGGTG GTTGNTTTGAGGATTCGTTGCCCTTTACTTTCTA



consensusID : consensus_12835#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence
                              [ATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGTAAGTTCTGAAACGATTTCAATCTCATGCACTTTTAGGATATAGTTCTGGCTTACTACCTGCATCCGCTTTTTACTTGATGCCCTAGAATCTGTGCTGTCAACAATTCTAAAGTTTGACCACCGGTAAAAGAAAGCAGAGATATTATTTACCTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF316641             [ATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGATAGTCCCTTTGTAAGTTCTGAAACGATTTCAATCTCATGCACTTTTAGGATATAGTTCTGGCTTACTACCTGCATCCGCTTTTTACTTGATGCCCTAGAATCTGTGCTGTCAACAATTCTAAAGTTTGACCACCGGTAAAAGAAAGCAGAGATATTATTTACCTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12835#2 ATGCAGCCTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGAGCTAGGATGCAAGA TAGTCCCTTTGTAAGTTCTGAAACGATTTCAATCTCATGCACTTTTAGGATATAGTTCTG GCTTACTACCTGCATCCGCTTTTTACTTGATGCCCTAGAATCTGTGCTGTCAACAATTCT AAAGTTTGACCACCGGTAAAAGAAAGCAGAGATATTATTTACCTTTGTGTTAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12835#0      CCATCCCAGCCGCCACGCCCACGCGTCGCAAGCCGCCGCCAGTCGACGCACGCGCCGACT 60
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      GCGCCGTCGCCGCGCCAGCCCGGCCGCCTGCCCGCGCACCTCACCGTCGCCAGTCGCGCT 120
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      GCCCAGCCCGCTAGCCGCCTGCGCGCGCCGGCGCGCGCCTCGCCGTCGCCGGACGCCCAG 180
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      ACGCCCGGTCGGCGGTCGCGGCCGCGGCGTTGCCTCGCCGGCCGCCCACAGGCCACAGCC 240
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      GGCTCGCCGGCTGCTCGGCTCGCCGCTCGCCGCCTCCGCACCTCGCCGCCTCCGCGGCTC 300
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      CGCACCTCGCGCCTGGCCGGCGCGGTAGCGCCCCGCGCCCGGCGGCCGCCTGCGCGCCTC 360
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      GCGGCCTTCGGCCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGC 420
consensus_12835#1      ----------GGCTCCCATCCTCGAGCAACATCACAGCAACCGAGCATTCGAGCAACTGC 50
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      AACGTGTAGCTGCTTATGCCAAAGGGTGACAGAAATCAAGAATAAGCAATAGTATTCTGT 480
consensus_12835#1      AACG--------------------GGTGACAGAAATCAAGAATAAGCAATAGTATTCTGT 90
consensus_12835#2      -----------------------------------------------------ATGCAGC 7
                                                                            ** * * 

consensus_12835#0      TTGC-TTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCC 539
consensus_12835#1      TTGC-TTGGTGCAATGCCTGGTTATTACGACATCGATGATATCCTGATGGAGGAGGAGCC 149
consensus_12835#2      CTGTGTTGATTTGAGGATTCGTTGCCCTTACTTCTATGA-GCTAGGATGCAAGATAGTCC 66
                        **  *** *   * *  * ***      ** ** ****      **** * **    **

consensus_12835#0      TATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACTACTAGATCCTGGCGCTGA 599
consensus_12835#1      TATTTCGGTAGTTTTTCAAGTGAGTGCAAATGGTGTTGGACTACTAGATCCTGGCGCTGA 209
consensus_12835#2      CTTT---GTAAGTTCTGAAACGATTTCAATC--TCATGCACTTTTAGGATATAGTTCTGG 121
                         **   ***  ** * **  ** * ***    *  ** ***  ***    * *  *** 

consensus_12835#0      AAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACAT-GGGC 658
consensus_12835#1      AAGAAACAGTGTTGAAAAGGGTGCTAAGGTGGACCTTCCATTTTGGCTTGCACATTGGGC 269
consensus_12835#2      CTT--ACTACCTGCATCCGCTTTTTACTTGATGCCCTAGAATCTGTGCTGTCAACAATTC 179
                            **    *  *   *  *  **       ** *  * * **   **   *     *

consensus_12835#0      TGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCC 718
consensus_12835#1      TGCTGTCTCTGGAACAAGCAGTTTCAATAAATGTACCTCCTTGCTTCACCCAGAAAACCC 329
consensus_12835#2      TAAAGTTTGACCACCGGTAAAAGAAAGCAGAGATATTATTTACCTTTGTGTTAAAAAAAA 239
                       *   ** *    * *    *     *  * *  **     *  ***       ****   

consensus_12835#0      GGAAGGAGATCCAAGCTGA-TGCAGCCTGT--GTTGATTTGAGGATTCGTTGCCCTTACT 775
consensus_12835#1      GGAAG-AGATCCAAGCTNNATGCAGCCTGGTGGTTGNTTTGAGGATTCGTTGCCCTTTAC 388
consensus_12835#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 288
                         **  * *   **         *                 *  *               

consensus_12835#0      TCTATGAGCTAGGATGCAAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCT 835
consensus_12835#1      TTTCTA------------------------------------------------------ 394
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      TGCGCTATGCATTCACTAGTAGGTACAAGGAGATACTAAGCAAGTCACACAGCTCTTCCA 895
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      TGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCGAAT 955
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      CTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGA 1015
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      AAGCGTCCATTCTTGGTAGGAAAAGGAAGACAAAACTGCCTGATGGACCTTCTGCACCTT 1075
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      GAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTACTTGAGCTGATGTATGTATACTT 1135
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      CATTAATATGTCGCTGTAAGAGAAGACCAAAAGTGAAACAATTCCGTTCGGAGATCACAC 1195
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      GTTTGTGCATTCTAATCTGGTGGCTGGCCAACCAACACAGCCTCTTGAACAAAGGGCAGT 1255
consensus_12835#1      ------------------------------------------------------------
consensus_12835#2      ------------------------------------------------------------
                                                                                   

consensus_12835#0      TAGTTATTATATTCCTTCCTTTTGGAATCACCGAAACGCGTAATACATA 1304
consensus_12835#1      -------------------------------------------------
consensus_12835#2      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)