cluster # 12843

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Oryza sativa
cluster # 12843 cluster # 12843 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12843#0 length = 1611 sequences # 5

consensus_12843#1 length = 302 sequences # 5
consensus_12843#2 length = 293 sequences # 1

consensusID : consensus_12843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1611
fasta sequence

                              [GGCCCAACCACATTGACAACACGCGGCACACGCTGCGTCCAGGCCGATCCGGTGTTGCCGAACAGCCTGCTCGTGTCGCCGCCGCGCGAGTACAAAACACGCTCGGCACGCCACGCGGGGGCGGCACGAGCTTTCCACGGTGGATTCCCCCCATCCATCCCTCTCGCCCGAGTTCCCTGCCTCGCCGTCCCTCCTCTCATCTTGCTTTCCCCTTCTTCGCCCACGCGGCCGCGGCCAAAGCCCACCGACCGTGCCTGCCTTCCCCCTACCACATCACCGCCGCGGCGTCCACCCGAATCCCCCCTCCCACAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAAAGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCGGCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGCACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCACTCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCCTCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTCTTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCCGCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTCACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTCGTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCATTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATGACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCCTACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGCGGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTC-AGATGGAGAA-CCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTGTTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGGGTTTCT]

[+] EMBL AK100951             [GGCCCAACCACATTGACAACACGCGGCACACGCTGCGTCCAGGCCGATCCGGTGTTGCCGAACAGCCTGCTCGTGTCGCCGCCGCGCGAGTACAAAACACGCTCGGCACGCCACGCGGGGGCGGCACGAGCTTTCCACGGTGGATTCCCCCCATCCATCCCTCTCGCCCGAGTTCCCTGCCTCGCCGTCCCTCCTCTCATCTTGCTTTCCCCTTCTTCGCCCACGCGGCCGCGGCCAAAGCCCACCGACCGTGCCTGCCTTCCCCCTACCACATCACCGCCGCGGCGTCCACCCGAATCCCCCCTCCCACAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAAAGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCGGCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGCACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCACTCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCCTCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTCTTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCCGCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTCACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTCGTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCATTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATGACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCCTACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGCGGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTC AGATGGAGAA CCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTGTTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGGGTTTCT]
[+] EMBL AK072549             [                                                                                                                                                                                                                                                              CTGCCTTCCCCCTACCACATCACCGCCGCGGCGTCCACCCGAATCCCCCCTCCCACAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAAAGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCGGCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGCACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCACTCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCCTCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTCTTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCCGCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTCACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTCGTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCATTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATGACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCCTACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGCGGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTC AGATGGAGAA CCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTGTTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGGGTTTCT]
[+] EMBL AK106023             [                                                                                                                                                                                                                                                                   TTCCCCCTACCACATCACCGCCGCGGCGTCCACCCGAATCCCCCCTCCCACAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAAAGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCGGCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGCACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCACTCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCCTCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTCTTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCCGCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTCACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTCGTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCATTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATGACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCCTACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGCGGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTC AGATGGAGAA CCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTGTTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGG      ]
[+] EMBL AK100942             [                                                                                                                                                                                                                                                                                                                     CAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAAAGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCGGCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGCACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCACTCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCCTCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTCTTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCCGCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTCACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTCGTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCATTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATGACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCCTACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGCGGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTC AGATGGAGAA CCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTACATTATTGTGTCTCTGTTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGGG     ]
[+] EMBL C97119               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCCTACTTCGCCGCCTGCGG TTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGCGGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTGGTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTACGCTTGCAAGGNCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAAGATGGAGAACCCTTNATGCATAAANGGTAAGAACTNCTGGATCTTGCT                                                                                                                                                                                                           ]




>consensus_12843#0
GGCCCAACCACATTGACAACACGCGGCACACGCTGCGTCCAGGCCGATCCGGTGTTGCCG
AACAGCCTGCTCGTGTCGCCGCCGCGCGAGTACAAAACACGCTCGGCACGCCACGCGGGG
GCGGCACGAGCTTTCCACGGTGGATTCCCCCCATCCATCCCTCTCGCCCGAGTTCCCTGC
CTCGCCGTCCCTCCTCTCATCTTGCTTTCCCCTTCTTCGCCCACGCGGCCGCGGCCAAAG
CCCACCGACCGTGCCTGCCTTCCCCCTACCACATCACCGCCGCGGCGTCCACCCGAATCC
CCCCTCCCACAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAA
AGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCG
GCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGC
ACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCAC
TCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCC
TCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTC
TTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCC
GCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTC
CTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTC
ACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTC
GTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCA
TTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATG
ACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCC
TACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGC
GGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTG
GTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTAC
GCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGA
GGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCA
TAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTC
TTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCT
ATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTG
TTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGGGTTTCT

consensusID : consensus_12843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 302
fasta sequence

                              [CTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCA--AAAAAAAAAAAA]

[+] EMBL C97640               [CTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAANACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGANCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCNTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAANTAGTNATAATATGGAATGGTCTATGCAATGGNACAGAGATGCATAAGGGAAATTCTCTTTNTTCTNNA  AAAAAAAAAAA ]
[-] EMBL OSC102311            [    GCTTGCAAGNCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCATGGTGAATACGTGCCTCTCAAGAGCAATATNCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACNGCTGGANCTTGCTCTANAGAAGAGANTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGNTTGGNCTATGCNATGGAACANANATGCATAAGGAAAATTCTCTTTCGTTTGCATTAAAAAAAAAAAA]
[+] EMBL AA751384             [                              GATTGATCGAAGCGCATTGTATGAGCATCTCGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGG                                                                    ]
[+] EMBL AU102090             [                                                                 GGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTNGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTAAAAAAAAAAA ]
[+] EMBL AU160899             [                                                                              ATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATNAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCA  AAAAAAA     ]




>consensus_12843#1
CTACGCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCT
CGGAGGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGA
TGCATAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGT
GCTCTTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATG
GTCTATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCAAAAAAAAAAA
AA

consensusID : consensus_12843#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [CCTTGGTGAANACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCNCTAAAGAAGAGAGTAGGATTTGTTTTGTGCNCTTCTATCTAGNTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGNCTATGCAATGGAACAGAGATGCATAAGGAAAANTCTCTTTCTTTTGCATTATTGTGNCTCTGTTTACATTATTTTCCTGNCATTCATGNCTAATTTATGATAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU163290             [CCTTGGTGAANACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAGGGTAAGAACTGCTGGATCTTGCNCTAAAGAAGAGAGTAGGATTTGTTTTGTGCNCTTCTATCTAGNTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGNCTATGCAATGGAACAGAGATGCATAAGGAAAANTCTCTTTCTTTTGCATTATTGTGNCTCTGTTTACATTATTTTCCTGNCATTCATGNCTAATTTATGATAAAAAAAAAAAAAAAAAAA]




>consensus_12843#2
CCTTGGTGAANACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCATAAAG
GGTAAGAACTGCTGGATCTTGCNCTAAAGAAGAGAGTAGGATTTGTTTTGTGCNCTTCTA
TCTAGNTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGNCTATGCA
ATGGAACAGAGATGCATAAGGAAAANTCTCTTTCTTTTGCATTATTGTGNCTCTGTTTAC
ATTATTTTCCTGNCATTCATGNCTAATTTATGATAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12843#0      GGCCCAACCACATTGACAACACGCGGCACACGCTGCGTCCAGGCCGATCCGGTGTTGCCG 60
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      AACAGCCTGCTCGTGTCGCCGCCGCGCGAGTACAAAACACGCTCGGCACGCCACGCGGGG 120
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GCGGCACGAGCTTTCCACGGTGGATTCCCCCCATCCATCCCTCTCGCCCGAGTTCCCTGC 180
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      CTCGCCGTCCCTCCTCTCATCTTGCTTTCCCCTTCTTCGCCCACGCGGCCGCGGCCAAAG 240
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      CCCACCGACCGTGCCTGCCTTCCCCCTACCACATCACCGCCGCGGCGTCCACCCGAATCC 300
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      CCCCTCCCACAAGACGACCGAAGAAAAACGGGCAATCGCCAAATCCCCGTGAAACCCCAA 360
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      AGCGGCCGCACCGCGGGCCGAGCCGCCGAGGCGATGGAGCTTGCGACGCACGACCTCGCG 420
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GCGCTGGGCGCGGCCGACCTCGTCCGCGTCTCCGCCTCGATCCCGCGCGCGGCGCCGCGC 480
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      ACCTTCGCGCTGCTCACCGCGGGCCTCGTCTTCCCGCTCTCCGCCGCGGTGCTCGTCCAC 540
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      TCCCTCTTCACCCACCCCATCATCCTCCGCCTCCAGGGCGCCAACGGCGACTACTCCTCC 600
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      TCCGACTCCGCCCAGTGGCTCAAGCTCTTCGCGTACCAGTTCCTCTACCTCATCCTCCTC 660
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      TTCACCCTCTCCCTCCTCTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCGCTCTACGCC 720
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GCCAAGCCGGCATCCATCGCCTCCTCGCTCGCCGCGCTGCCGCCCATCCTCCCGCGCCTC 780
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      CTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACCTCGTCTTCGCCCTC 840
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      ACCGTCCTCCTCCTCCTCCTGCTCTTCGCCCCATCTTCCTCCCCGCCCTCCCTCCCCTTC 900
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GTCCTCATCCTTGTCGTCGTCGTGTTCGTCTTCCTCGCGATCCATGTCTACATCTCCGCA 960
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      TTGTGGCACCTCGCCAGCGTCATCTCCGTGCTCGAGCCGCTCTGCGGTCTCGCCGCCATG 1020
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      ACAAAAAGCAAGCAACTGCTTCAAGGGCGCACCCGCACGGCCGGCGTGCTCGTCGTCTCC 1080
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      TACTTCGCCGCCTGCGGCGTTACCGCTGTGCTGTTCCGCGCGGCCGTAGTCAAGGGCCGC 1140
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GGCGAGGAGGGGAGCCTTGGCCTGAGCTTGCCCGGTCGGGTGCTTGCTGGTGCTGTGCTG 1200
consensus_12843#1      ------------------------------------------------------------
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GTGTCTGTTCTTGTCTGCGTCAATTTGCTGGGGCTACTCGTGCAGAGCGTGTTTTACTAC 1260
consensus_12843#1      --------------------------------------------------------CTAC 4
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGA 1320
consensus_12843#1      GCTTGCAAGGCCTTCCACAACCAGCAGATTGATCGAAGCGCATTGTATGAGCATCTCGGA 64
consensus_12843#2      ------------------------------------------------------------
                                                                                   

consensus_12843#0      GGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCA 1380
consensus_12843#1      GGGTACCTTGGTGAATACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCA 124
consensus_12843#2      -----CCTTGGTGAANACGTGCCTCTCAAGAGCAATATTCAGATGGAGAACCTTGATGCA 55
                            ********** ********************************************

consensus_12843#0      TAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTC 1440
consensus_12843#1      TAAAGGGTAAGAACTGCTGGATCTTGCTCTAAAGAAGAGAGTAGGATTTGTTTTGTGCTC 184
consensus_12843#2      TAAAGGGTAAGAACTGCTGGATCTTGCNCTAAAGAAGAGAGTAGGATTTGTTTTGTGCNC 115
                       *************************** ****************************** *

consensus_12843#0      TTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCT 1500
consensus_12843#1      TTCTATCTAGTTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGTCT 244
consensus_12843#2      TTCTATCTAGNTCACTATGATGCTTTGTAATCTGTAAGTAGTAATAATATGGAATGGNCT 175
                       ********** ********************************************** **

consensus_12843#0      ATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCATTATTGTGTCTCTG 1560
consensus_12843#1      ATGCAATGGAACAGAGATGCATAAGGAAAATTCTCTTTCTTTTGCAAAAAAAAAAAAA-- 302
consensus_12843#2      ATGCAATGGAACAGAGATGCATAAGGAAAANTCTCTTTCTTTTGCATTATTGTGNCTCTG 235
                       ****************************** ***************  *           

consensus_12843#0      TTTACATTATTTTCCTGTCATTCATGACTAATTTATGATATACGGGTTTCT------- 1611
consensus_12843#1      ----------------------------------------------------------
consensus_12843#2      TTTACATTATTTTCCTGNCATTCATGNCTAATTTATGATAAAAAAAAAAAAAAAAAAA 293