cluster # 12849

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12849 cluster # 12849 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12849#0 length = 1846 sequences # 9

consensus_12849#1 length = 586 sequences # 1
consensus_12849#2 length = 286 sequences # 1

consensusID : consensus_12849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1846
fasta sequence

                              [CGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA----ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCAATTTTTTCCAAAAAAAA]

[+] EMBL AK065620             [CGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA    ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGA                                                                                                       ]
[+] EMBL CB620971             [                                                                          TGCTCGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTCGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGGCCTACCACAACGTGATCAGGGTGTCTGAGGAGGGGAAGCTGATCTACATATCGCGCGTGCAGACGTACGTGATCAACAGCGCCAAGATCGGGTCCCTCAACAGCCGCCCGCATGCGACGTCCGGGAAGGGCGTCACCCACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGATGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK061790             [                                                                                           tgctttAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTC      ATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA    ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK067251             [                                                                                                    TTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA    ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB622402             [                                                                                                                                                                                                    GGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCATCATACGGAGGAGGACATGGGGCCACCGTGGCTGCTGCCGCTGCTGTCGACGAGCTTCTTCGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCTACAGCGCCTAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCTCCAACTCCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCTAGCTGGGAGGAATGCTGTGGGACCCTTGCCTGACATTCGCCATCCGGTCGATGCGCGGGCATGACTCCGGCGACGGCGGCTCCGGCTCTGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB620972             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATCACCCATCACCAGCATATACTAGTCTGTTCTTAAAAAAAGCAAACTCTAGCTACGATTCTGGACACATCGTAGCTAGGATTGTACTTTTTTTTTTTTTGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAGGGGAAAAAATAGAATGATGGATGACTTAATTAAaaaaaagga                                                                              ]
[-] EMBL CB622403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACTCTAGCTACGATTCTGGACACATCGTAGCTAGGATTGTACTT TTTTTTTTTTGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCAATTTT            ]
[-] EMBL CB672052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTGGGCGGAAGGGGTATATCCCTAGCTTTTCAGCCAAAGTGGCCAAACCTAGGTATCACCAGTTCCCTGGTAGTACTAGCTAGCCCCATATATGTACATGATCAAGTGTCAGGTTTGAAATAGTGAAGGGATATCCAATCAGCTTCTGTTAGGTCCCTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACCCAATAATTAATTTAGGTCATGAAGTAAGTATATATGGGTACATATGAAATATATTGGCAAATGTTGTCATTTGGAGTAAGTTATAAAGGCCATGGTGGGGATGGCCTGCTTTCATGCATGTAGACCCAAGGTTAAGTTAAGACAAGAAAAAGGGGGACCCAGGGGGGATAGAAACATAGGTAGGGGTTTTTAGGTAGGTGGGGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATTTCGGTTTGGGTAGTAGTATATACTTGGCTGTTTGCCCCCCCCCCCCAAAGGGTTTATTAGCGTTGTGGGGGGTAGTTTTCCCCTTTTAAGTTTCAGAGTTTTTCCTTTGATCCTTTGGGGCTTAATTTGTATAGACAATGTATGATGTTTTTCTTGGAAAAATAAGGGAAAAAATAGAATGATGGATG                                                                                                 ]
[+] EMBL BI813550             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTAGTAGTATATACTT GCTGTTTGCCCCCACCACCC ATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGAC ATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCATTTTTTTCCAAAAAAAA]




>consensus_12849#0
CGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTC
GTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTG
CTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCG
GGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACG
GCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGT
GGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGA
GCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACT
GCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACG
TGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGA
TCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCG
TCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCC
TCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGA
AGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCA
AGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGA
TCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGC
CGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCT
ACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATA
CTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGA
TTGTAATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAAC
CTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTG
TCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATAT
GATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACAC
AATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAA
TGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGT
AGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGT
AGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTAT
CTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTA
GCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGG
ACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAA
TGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCA
CCCACAACTCTGTAATATATTTAACTTCAATTTTTTCCAAAAAAAA

consensusID : consensus_12849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCAATATCTACGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA]

[+] EMBL CB672051             [ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCAATATCTACGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA]




>consensus_12849#1
ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCAATATCTACGGACACATCCAT
CCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCT
CTGCTAGCTACTAACCCTCGGAGCAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTAT
ATCATGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCG
ATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTG
TCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAAC
CTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGC
GACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAG
GTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATC
GTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA

consensusID : consensus_12849#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGCACCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTCTTTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATTGGTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA]

[+] EMBL CB640154             [CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGCACCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTCTTTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATTGGTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA]




>consensus_12849#2
CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGCA
CCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTCT
TTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATTG
GTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATC
ATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12849#0      ------------------------------------------------CGGACACATCCA 12
consensus_12849#1      ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCA-ATATCTACGGACACATCCA 59
consensus_12849#2      -CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGC 59
                                                                       *   **  **  

consensus_12849#0      TCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGC 72
consensus_12849#1      TCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGC 119
consensus_12849#2      ACCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTC 119
                        ****  * *    *  * ***    *  *     ** ** ** *    *    ***  *

consensus_12849#0      TCTGCTAGCTACTAACCCTC----GGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATT 128
consensus_12849#1      TCTGCTAGCTACTAACCCTC----GGAGCAGCT--------------------------- 148
consensus_12849#2      TTTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATT 179
                       * ** *   *  * * ****    *    ****                           

consensus_12849#0      GGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATAT 188
consensus_12849#1      --------------------------CTCTGGAAGAACGGGCGGCGGCGGCGGGGTATAT 182
consensus_12849#2      GGTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATAT 239
                                                 **********************************

consensus_12849#0      CATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGC 248
consensus_12849#1      CATG-----------GTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGC 231
consensus_12849#2      CATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA------------- 286
                       ****           ********************************             

consensus_12849#0      GGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGG 308
consensus_12849#1      GGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGG 291
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAAC 368
consensus_12849#1      CCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAAC 351
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCC 428
consensus_12849#1      GAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCC 411
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGG 488
consensus_12849#1      GCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGG 471
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGC 548
consensus_12849#1      GTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGC 531
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAAC 608
consensus_12849#1      GCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA----- 586
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      ACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGC 668
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      AAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGG 728
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCG 788
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      AGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGG 848
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATC 908
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      AGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAG 968
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTG 1028
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTAATT 1088
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTAT 1148
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCT 1208
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTT 1268
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTA 1328
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      ATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCA 1388
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAA 1448
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTT 1508
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTT 1568
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTG 1628
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATT 1688
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGAT 1748
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAAC 1808
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCTGTAATATATTTAACTTCAATTTTTTCCAAAAAAAA 1846
consensus_12849#1      --------------------------------------
consensus_12849#2      --------------------------------------