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Oryza sativa
cluster # 12849 cluster # 12849       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12849#0 length = 1846 sequences # 9  
consensus_12849#1 length = 586 sequences # 1  
consensus_12849#2 length = 286 sequences # 1  

consensusID : consensus_12849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1846
fasta sequence
                              [CGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA----ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCAATTTTTTCCAAAAAAAA]

[+] EMBL AK065620             [CGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA    ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGA                                                                                                       ]
[+] EMBL CB620971             [                                                                          TGCTCGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTCGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGGCCTACCACAACGTGATCAGGGTGTCTGAGGAGGGGAAGCTGATCTACATATCGCGCGTGCAGACGTACGTGATCAACAGCGCCAAGATCGGGTCCCTCAACAGCCGCCCGCATGCGACGTCCGGGAAGGGCGTCACCCACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGATGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK061790             [                                                                                           tgctttAGCTTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTC      ATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA    ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK067251             [                                                                                                    TTCGATAGCTAGCTTAGCTGCTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTA    ATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB622402             [                                                                                                                                                                                                    GGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCATCATACGGAGGAGGACATGGGGCCACCGTGGCTGCTGCCGCTGCTGTCGACGAGCTTCTTCGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCTACAGCGCCTAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCTCCAACTCCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGCTAGCTGGGAGGAATGCTGTGGGACCCTTGCCTGACATTCGCCATCCGGTCGATGCGCGGGCATGACTCCGGCGACGGCGGCTCCGGCTCTGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB620972             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TATCACCCATCACCAGCATATACTAGTCTGTTCTTAAAAAAAGCAAACTCTAGCTACGATTCTGGACACATCGTAGCTAGGATTGTACTTTTTTTTTTTTTGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAGGGGAAAAAATAGAATGATGGATGACTTAATTAAaaaaaagga                                                                              ]
[-] EMBL CB622403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACTCTAGCTACGATTCTGGACACATCGTAGCTAGGATTGTACTT TTTTTTTTTTGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCAATTTT            ]
[-] EMBL CB672052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTGGGCGGAAGGGGTATATCCCTAGCTTTTCAGCCAAAGTGGCCAAACCTAGGTATCACCAGTTCCCTGGTAGTACTAGCTAGCCCCATATATGTACATGATCAAGTGTCAGGTTTGAAATAGTGAAGGGATATCCAATCAGCTTCTGTTAGGTCCCTAGCTAGATATGATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACCCAATAATTAATTTAGGTCATGAAGTAAGTATATATGGGTACATATGAAATATATTGGCAAATGTTGTCATTTGGAGTAAGTTATAAAGGCCATGGTGGGGATGGCCTGCTTTCATGCATGTAGACCCAAGGTTAAGTTAAGACAAGAAAAAGGGGGACCCAGGGGGGATAGAAACATAGGTAGGGGTTTTTAGGTAGGTGGGGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATTTCGGTTTGGGTAGTAGTATATACTTGGCTGTTTGCCCCCCCCCCCCAAAGGGTTTATTAGCGTTGTGGGGGGTAGTTTTCCCCTTTTAAGTTTCAGAGTTTTTCCTTTGATCCTTTGGGGCTTAATTTGTATAGACAATGTATGATGTTTTTCTTGGAAAAATAAGGGAAAAAATAGAATGATGGATG                                                                                                 ]
[+] EMBL BI813550             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTAGTAGTATATACTT GCTGTTTGCCCCCACCACCC ATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATTTGTATAGAC ATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCTGTAATATATTTAACTTCATTTTTTTCCAAAAAAAA]


>consensus_12849#0 CGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTC GTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTTCGATAGCTAGCTTAGCTG CTTGAATTGGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCG GGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACG GCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGT GGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGA GCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACT GCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACG TGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGA TCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCG TCACCAACACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCC TCGGCTGCAAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGA AGCGCGGGCAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCA AGAAGGCGAGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGA TCCGGTGGTCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGC CGCCGATCAGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCT ACGGTTAGCTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATA CTAGTCTGTCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGA TTGTAATTTTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAAC CTAGCTATCACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTG TCAGGTCTGAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATAT GATATGTTGATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACAC AATAATTAATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAA TGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGT AGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGT AGTGGTTTTTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTAT CTCGGTTTGTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTA GCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGG ACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAA TGATGGATGACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCA CCCACAACTCTGTAATATATTTAACTTCAATTTTTTCCAAAAAAAA



consensusID : consensus_12849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCAATATCTACGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA]

[+] EMBL CB672051             [ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCAATATCTACGGACACATCCATCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCTCTGCTAGCTACTAACCCTCGGAGCAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA]


>consensus_12849#1 ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCAATATCTACGGACACATCCAT CCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGCT CTGCTAGCTACTAACCCTCGGAGCAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTAT ATCATGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGCGGCGAGGCG ATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGGCCGCTGCTG TCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAACGAGTGCAAC CTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCCGCCCACCGC GACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGGGTGTCGGAG GTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGCGCCAAGATC GTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA



consensusID : consensus_12849#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence
                              [CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGCACCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTCTTTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATTGGTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA]

[+] EMBL CB640154             [CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGCACCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTCTTTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATTGGTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATCATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA]


>consensus_12849#2 CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGCA CCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTCT TTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATTG GTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATATC ATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12849#0      ------------------------------------------------CGGACACATCCA 12
consensus_12849#1      ATCAACCCTAATTCCAGAAGGCCCGAATCGATTTCCATCA-ATATCTACGGACACATCCA 59
consensus_12849#2      -CCGGCCATCACATCATGGATACTGCGTCTTCCTCCTCCCTGTTGCTGCATTCATCTCGC 59
                                                                       *   **  **  

consensus_12849#0      TCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGC 72
consensus_12849#1      TCCATTTTTTTTCCCTCCTCTTCTCATCAATCAACTTCTTCTTTCTTCGTGTTCTTCAGC 119
consensus_12849#2      ACCATCGTATACGACGACCCTTTCAGTTGAATTCATTATTATTGCAAGATTGATTTCTTC 119
                        ****  * *    *  * ***    *  *     ** ** ** *    *    ***  *

consensus_12849#0      TCTGCTAGCTACTAACCCTC----GGAGCAGCTTCGATAGCTAGCTTAGCTGCTTGAATT 128
consensus_12849#1      TCTGCTAGCTACTAACCCTC----GGAGCAGCT--------------------------- 148
consensus_12849#2      TTTGTTTTTTCTTTATCCTCTTTTGCTTTAGCTTCGATAGCTAGCTTAACTGCTTGAATT 179
                       * ** *   *  * * ****    *    ****                           

consensus_12849#0      GGTGTTTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATAT 188
consensus_12849#1      --------------------------CTCTGGAAGAACGGGCGGCGGCGGCGGGGTATAT 182
consensus_12849#2      GGTGTGTGTTTCAACTCTCTGAAGCTCTCTGGAAGAACGGGCGGCGGCGGCGGGGTATAT 239
                                                 **********************************

consensus_12849#0      CATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGC 248
consensus_12849#1      CATG-----------GTGATGGTGGGGATGATGGAGACGAGCCCGGACGACGGCGGTGGC 231
consensus_12849#2      CATGACGTGGTGCAGGTGATGGTGGGGATGATGGAGACGAGCCCGGA------------- 286
                       ****           ********************************             

consensus_12849#0      GGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGG 308
consensus_12849#1      GGCGAGGCGATGGCGGCGGCGCAGCAGACGGAGGAGGACATGGGGCCACCGTGGCTGCGG 291
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAAC 368
consensus_12849#1      CCGCTGCTGTCGACGAGCTTCTTTGTGGCGTGCGCGTCGCACCCGGAGCTGAGCAAGAAC 351
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCC 428
consensus_12849#1      GAGTGCAACCTCTTCTGCCTCGGCTGCACCGGCGACGCCCTCTGCGCCTACTGCCTCCCC 411
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGG 488
consensus_12849#1      GCCCACCGCGACCACCACGTCGTCCAGATTCGGAGGTCGTCGTACCACAACGTGATCAGG 471
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGC 548
consensus_12849#1      GTGTCGGAGGTGGGGAAGCTGATCGACATATCGCACGTGCAGACGTACGTGATCAACAGC 531
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGAGGCCCGGGAAGGGCGTCACCAAC 608
consensus_12849#1      GCCAAGATCGTGTTCCTCAACGGCCGCCCGCAGGCGATGCCCGGGAAGGGCGTCA----- 586
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      ACCTGCGAGATCTGCTGCCGCAGCCTCCCCGACTCCTTCCGCTTCTGCTCCCTCGGCTGC 668
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      AAGCTGGGAGGAATGCGGTGGGACCCAAGCCTGACATTCGCCATCCGGCCGAAGCGCGGG 728
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CAGGACTCCGGCGACGGCGGCTCCGGCTCCGACTACGACTCCTTCAGCCCCAAGAAGGCG 788
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      AGGAGGGCGGCGGCCGGCTACGATCAGCTCGGCCGGTTCGACCGGGGCATGATCCGGTGG 848
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCCGACGACGAGGGCAGCAAGTCCAACACGGCGCCGATCACGCCGACCACGCCGCCGATC 908
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      AGCCGGTGCCGGCCGTCGAGGAGGAAGGGCATCCCCCACCGTGCACCCTTCTACGGTTAG 968
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CTCACACACTACACCAACCAAAAAAAAAATTATCACCCATCACCAGCATATACTAGTCTG 1028
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCCTTAAAAAAAGCAAACTCTAGCTACGATTCTAGACATATCGTAGCTAGGATTGTAATT 1088
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TTTTTTGGACGGAAGGGGTATATCACTAGCTCTTCAGCCAAAGTGACCAAACCTAGCTAT 1148
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      CACCAGTTCACTGCTAGTACTAGCTAGCCACATATATGTACATGATCAAGTGTCAGGTCT 1208
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GAAATAGTGAAGTGATATCCAATCAGCTACTGTTAGGTCACTAGCTAGATATGATATGTT 1268
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTA 1328
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      ATCTAGGTCATGAAGTAAGTATATATGTGTACATATGAAATATATTGGCAAATGTTGTCA 1388
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGCTTTCATGCATGTAGACACAA 1448
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTT 1508
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTT 1568
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GTGTAGTAGTATATACTTGGCTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTG 1628
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTTTGATCCTCTGGGACTTAATT 1688
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGAT 1748
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      GACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAAC 1808
consensus_12849#1      ------------------------------------------------------------
consensus_12849#2      ------------------------------------------------------------
                                                                                   

consensus_12849#0      TCTGTAATATATTTAACTTCAATTTTTTCCAAAAAAAA 1846
consensus_12849#1      --------------------------------------
consensus_12849#2      --------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)