These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2934 fasta sequence [AAGAGAGAGAGATCCCCTCTCGCCTCGCCTCCTCCCTCCTGCCTCCTCGATCCCGATCTCTCCTCCTCCGCCGCCTCGCCGCCGCCGCCGTGGACGCCTCAAGGGCTGATGGAAAATTTCTCCCCGAGAACCCTGCTCAATAGTATCTTGCGTATCACTGTCTTAACCTCCGATGGCTCTACTGCAAGGCCCAAGCCCATTCAGAAGTACTGCCAAAATGTGTGTGATATCTCAAGCATTGTGAGCCCTCTCATAGAGGATCTATGTGAGTCTCCTGAAGAGCAACTCAATGAGGTGTTAAGGGAGCTTGGCACTGCTATTAACAGAGCTTCAGGGCTTATTGGGAACTGGCAACAGACAACCAGCAAAATATATTTTATATGGCAGATTGAATC-AGTAATCTCAGATATCCAGGGATGTTCTCTACAGCTGTGCCAGCTTGTTAACTCTCTATTACCTTCTTTGACTGGCCGTGCATGCACATGTATTGAGAAACTCCAAGACATAAATTATGAAAACATGTTTGATCTGGTAAAGGAGTCTTCATTGGAGCTAGTTGAGACGGACACAACAAGTCCTGAGAATCTGTCGAGACTATCTAGTTCATTGAGTTTGTCAACTAACCTGGAATTTTACATGGAAGCTGTTTCCCTTGAGAATCTCAGAGCAAGGGCAATGCGGAGTGAGAACCGTGAAGAAATGGATCTGGCTGACAAGATGATCCCCCTGGTCAACTATATGCATGACCACCTTCTGAGGGAAACACAACTGCTTAGCATCAATGGGGTGCCCATTCCTGCAGATTTTTGCTGCCCGCTGTCCCTAGAGCTGGTGTCAGATCCTGTTATTGTAGCATCTGGTCAGACATATGAGCGGGTTTATATCAAGTTATGGCTTGATGAGGGTTTTACTATCTGCCCGAAGACACGCCAAAGACTTGGTCACTCCAATTTAATTCCAAATTAAACCGTGAAAGCTTTGATAGCTAATTGGTGCGAATCACACAACATTAGGCTTCCTGATCCTATGAAATCCTTGAAATTGAACTTCCCTTTGGCTGCGTCTGCTCTCCAGGATTCGAGCACCACAGGAAGCAGCCCTCTACATCCTACTGTCGCTGCTAAGGGTAATATTCCTGGGTCCCCGGAAGCTGACCTTTATATGAG-AAGCTTGAATAGAGCATCTCCTCCACACAGTGTAGTCCATCAGAATTCTCATGCGCATGTGAACCGTGCT-GGTCATGAAGCCTCCATTAAGCAATCTTCAGAAAATGCTAATGGTTCTGCATCAGATGTTTCAAGGTTATCTCTTGCAGGTTCTGAAACAAGAGAGTCTAGTCTGGAAGAAAGAAATGCTGGTTCTATCGGTCAAACTTCAGAACAGTCAATTGAGGAAGCATTTCAAGCATCTAATTTGGACAGGGATTCACATGACCATGTGGGTAGTTCTTCGGTGAATGGTAGCCTTCCAAATAGCGGTCAACTTGATGCAGAATGTGACAATGGGCCAAGCGAAAGGACAAATTACAGTAGTGATGCATCTGGAGAAGTTACAGATGGGCCTTCAGCATCTTCTGCTCCTCAGAGGGAGCATCTAATCCCTTCTAGATTGGCTGATGTTCGTAGTAGAGGCCAATTTGTTCGGCGACCATCTGAAAGGGGTTTCCCCAGAATAATATCTTCCTCATCCATGGATACACGGAGTGATCTTTCCGCCATCGAGAATCAGGTCCGCAAGTTAGTTGATGATTTAAGAAGTGATTCTGTAGATGTTCAAAGATCAGCGACATCAGATATCCGCCTTTTAGCTAAGCACAACATGGAGAACAGGATCATCATTGCAAACTGTGGAGCTATAAACTTGCTGGTTGGTCTTCTTCATTCGCCAGATTCCAAAACCCAAGAGCATGCCGTGACAGCCCTTCTGAATTTGTCAATCAATGATAATAATAAGATTGCCATTGCAAATGCTGATGCTGTTGACCCCCTCATCCATGTCCTTGAGACTGGGAACCCTGAAGCCAAGGAGAATTCAGCGGCTACATTATTCAGTCTCTCGGTTATTGAAGAAAACAAAGTGAGGATTGGAAGATCCGGTGCCATCAAACCTCTCGTCGACCTACTAGGAAATGGGACCCCTCGAGGAAAGAAAGATGCAGCTACTGCATTGTTTAATTTATCCATATTACATGAGAACAAGGCGCGTATTGTGCAGGCTGACGCTGTGAAGTACCTAGTTGAA-CTTATGGACCCTGCTGCTGGAATGGTTGACAAAGCTGTGGCTGTTTTGGCAAACCTTGCTACCATACCAGAAGGGAGGACAGCAATTGGTCAAGCGCGTGGTATTCCAGCCCTTGTTGAAGTTGTTGAACTCGGTTCAGCAAGGGGGAAGGAAAATGCGGCTGCAGCATTGCTTCAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTCTCAGCTACTTTCGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTTGAATGGTTGTAAAATTCGATATTGCCCTGC] [+] EMBL AK102080 [AAGAGAGAGAGATCCCCTCTCGCCTCGCCTCCTCCCTCCTGCCTCCTCGATCCCGATCTCTCCTCCTCCGCCGCCTCGCCGCCGCCGCCGTGGACGCCTCAAGGGCTGATGGAAAATTTCTCCCCGAGAACCCTGCTCAATAGTATCTTGCGTATCACTGTCTTAACCTCCGATGGCTCTACTGCAAGGCCCAAGCCCATTCAGAAGTACTGCCAAAATGTGTGTGATATCTCAAGCATTGTGAGCCCTCTCATAGAGGATCTATGTGAGTCTCCTGAAGAGCAACTCAATGAGGTGTTAAGGGAGCTTGGCACTGCTATTAACAGAGCTTCAGGGCTTATTGGGAACTGGCAACAGACAACCAGCAAAATATATTTTATATGGCAGATTGAATC AGTAATCTCAGATATCCAGGGATGTTCTCTACAGCTGTGCCAGCTTGTTAACTCTCTATTACCTTCTTTGACTGGCCGTGCATGCACATGTATTGAGAAACTCCAAGACATAAATTATGAAAACATGTTTGATCTGGTAAAGGAGTCTTCATTGGAGCTAGTTGAGACGGACACAACAAGTCCTGAGAATCTGTCGAGACTATCTAGTTCATTGAGTTTGTCAACTAACCTGGAATTTTACATGGAAGCTGTTTCCCTTGAGAATCTCAGAGCAAGGGCAATGCGGAGTGAGAACCGTGAAGAAATGGATCTGGCTGACAAGATGATCCCCCTGGTCAACTATATGCATGACCACCTTCTGAGGGAAACACAACTGCTTAGCATCAATGGGGTGCCCATTCCTGCAGATTTTTGCTGCCCGCTGTCCCTAGAGCTGGTGTCAGATCCTGTTATTGTAGCATCTGGTCAGACATATGAGCGGGTTTATATCAAGTTATGGCTTGATGAGGGTTTTACTATCTGCCCGAAGACACGCCAAAGACTTGGTCACTCCAATTTAATTCCAAATTAAACCGTGAAAGCTTTGATAGCTAATTGGTGCGAATCACACAACATTAGGCTTCCTGATCCTATGAAATCCTTGAAATTGAACTTCCCTTTGGCTGCGTCTGCTCTCCAGGATTCGAGCACCACAGGAAGCAGCCCTCTACATCCTACTGTCGCTGCTAAGGGTAATATTCCTGGGTCCCCGGAAGCTGACCTTTATATGAG AAGCTTGAATAGAGCATCTCCTCCACACAGTGTAGTCCATCAGAATTCTCATGCGCATGTGAACCGTGCT GGTCATGAAGCCTCCATTAAGCAATCTTCAGAAAATGCTAATGGTTCTGCATCAGATGTTTCAAGGTTATCTCTTGCAGGTTCTGAAACAAGAGAGTCTAGTCTGGAAGAAAGAAATGCTGGTTCTATCGGTCAAACTTCAGAACAGTCAATTGAGGAAGCATTTCAAGCATCTAATTTGGACAGGGATTCACATGACCATGTGGGTAGTTCTTCGGTGAATGGTAGCCTTCCAAATAGCGGTCAACTTGATGCAGAATGTGACAATGGGCCAAGCGAAAGGACAAATTACAGTAGTGATGCATCTGGAGAAGTTACAGATGGGCCTTCAGCATCTTCTGCTCCTCAGAGGGAGCATCTAATCCCTTCTAGATTGGCTGATGTTCGTAGTAGAGGCCAATTTGTTCGGCGACCATCTGAAAGGGGTTTCCCCAGAATAATATCTTCCTCATCCATGGATACACGGAGTGATCTTTCCGCCATCGAGAATCAGGTCCGCAAGTTAGTTGATGATTTAAGAAGTGATTCTGTAGATGTTCAAAGATCAGCGACATCAGATATCCGCCTTTTAGCTAAGCACAACATGGAGAACAGGATCATCATTGCAAACTGTGGAGCTATAAACTTGCTGGTTGGTCTTCTTCATTCGCCAGATTCCAAAACCCAAGAGCATGCCGTGACAGCCCTTCTGAATTTGTCAATCAATGATAATAATAAGATTGCCATTGCAAATGCTGATGCTGTTGACCCCCTCATCCATGTCCTTGAGACTGGGAACCCTGAAGCCAAGGAGAATTCAGCGGCTACATTATTCAGTCTCTCGGTTATTGAAGAAAACAAAGTGAGGATTGGAAGATCCGGTGCCATCAAACCTCTCGTCGACCTACTAGGAAATGGGACCCCTCGAGGAAAGAAAGATGCAGCTACTGCATTGTTTAATTTATCCATATTACATGAGAACAAGGCGCGTATTGTGCAGGCTGACGCTGTGAAGTACCTAGTTGAA CTTATGGACCCTGCTGCTGGAATGGTTGACAAAGCTGTGGCTGTTTTGGCAAACCTTGCTACCATACCAGAAGGGAGGACAGCAATTGGTCAAGCGCGTGGTATTCCAGCCCTTGTTGAAGTTGTTGAACTCGGTTCAGCAAGGGGGAAGGAAAATGCGGCTGCAGCATTGCTTCAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTCTCAGCTACTTTCGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTTGAATGGTTGTAAAATTCGATATTGCCCTGC] [+] EMBL AU069544 [ TCCCCTCTCGCCTCGCCTCCTCCCTCCTGCCTCCTCGATCCCGATCTCTCCTCCTCCGCCGCCTCGCCGCCGCCGCCGTGGACGCCTCAAGGGCTGATGGAAAATTTCTCCCCGAGAACCCTGCTCAATAGTATCTTGCGTATCACTGTCTTAACCTCCGATGGCTCTACTGCAAGGCCCAAGCCCATTCAGAAGTACTGCCAAAATGTGTGTGATATCTCAAGCATTGTGAGCCCTCTCATAGAGGATCTATGTGAGTCTCCTGAAGAGCAACTCAATGAGGTGTTAAGGGAGCTTGGCACTGCTATTAACAGAGCTTCAGGGCTTATTGGGAACTGGCAACAGACAACCAGCAAAATATATTTTATATGGCAGATTGAATCAAGTAATCTCA ] [+] EMBL CB637298 [ GGCTGATGGAAAATTTCTCCCCGAGAACCCTGCTCAATAGTATCTTGCGTATCACTGTCTTAACCTCCGATGGCTCTACTGCAAGGCCCAAGCCCATTCAGAAGTACTGCCAAAATGTGTGTGATATCTCAAGCATTGTGAGCCCTCTCATAGAGGATCTATGTGAGTCTCCTGAAGAGCAACTCAATGAGGTGTTAAGGGAGCTTGGCACTGCTATTAACAGAGCTTCAGGGCTTATTGGGAACTGGCAACAGACAACCAGCAAAATATATTTTATATGGCAGATTGAATC AGTAATCTCAGATATCCAGGGATGTTCTCTACAGCTGTGCCAGCTTGTTAACTCTCTATTACCTTCTTTGACTGGCCGTGCATGCACATGTATTGAGAAACTCCAAGACATAAATTATGAAAACATGTTTGATCTGGTAAAGGAGTCTTCATTGGAGCTAGTTGAGACGGACACAACAAGTC ] [+] EMBL CB675602 [ GGCTGATGGAAAATTTCTCCCCGAGAACCCTGCTCAATAGTATCTTGCGTATCACTGTCTTAACCTCCGATGGCTCTACTGCAAGGCCCAAGCCCATTCAGAAGTACTGCCAAAATGTGTGTGATATCTCAAGCATTGTGAGCCCTCTCATAGAGGATCTATGTGAGTCTCCTGAAGAGCAACTCAATGAGGTGTTAAGGGAGCTTGGCACTGCTATTAACAGAGCTTCAGGGCTTATTGGGAACTGGCAACAGACAACCAGCAAAATATATTTTATATGGCAGATTGAATC AGTAATCTCAGATATCCAGGGATGTTCTCTACAGCTGTGCCAGCTTGTTAACTCTCTATTACCTTCTTTGACTGGCCGTGCATGCACATGTATTGAGAAACTCCAAGACATAAATTATGAAAACATGTTTGATCTGGTAAAGGAGTCTTCATTGGAGCTAGTTGAGACGGACACAACAAGTCCTGAGAATCTGTCGAGACTATCTAGTTCATTGAGTTTGTCAACTAACCTGGAATTTTACATGGAAGCTGTTTCCCTTGAGAATCTCAGAGCAAGGGCAATGCGGAGTGAGAACCGTGAAGAAATGGATCTGGCTGACAAGATGATCCCCCTGGTCAACTATATGCATGACCACCTTCTGAGGGAAACACAACTGCTTAGCATCAATGGGGTGCCCATTCCTGCAGATTTTTGCTGCCCGCTGTCCCTAGAGCTGATGTCAGATCCTGTTATTGTAGCATCTGGTCAGACATATG ] [+] EMBL AK106557 [ CTTTGATAGCTAATTGGTGCGAATCACACAACATTAGGCTTCCTGATCCTATGAAATCCTTGAAATTGAACTTCCCTTTGGCTGCGTCTGCTCTCCAGGATTCGAGCACCACAGGAAGCAGCCCTCTACATCCTACTGTCGCTGCTAAGGGTAATATTCCTGGGTCCCCGGAAGCTGACCTTTATATGAG AAGCTTGAATAGAGCATCTCCTCCACACAGTGTAGTCCATCAGAATTCTCATGCGCATGTGAACCGTGCT GGTCATGAAGCCTCCATTAAGCAATCTTCAGAAAATGCTAATGGTTCTGCATCAGATGTTTCAAGGTTATCTCTTGCAGGTTCTGAAACAAGAGAGTCTAGTCTGGAAGAAAGAAATGCTGGTTCTATCGGTCAAACTTCAGAACAGTCAATTGAGGAAGCATTTCAAGCATCTAATTTGGACAGGGATTCACATGACCATGTGGGTAGTTCTTCGGTGAATGGTAGCCTTCCAAATAGCGGTCAACTTGATGCAGAATGTGACAATGGGCCAAGCGAAAGGACAAATTACAGTAGTGATGCATCTGGAGAAGTTACAGATGGGCCTTCAGCATCTTCTGCTCCTCAGAGGGAGCATCTAATCCCTTCTAGATTGGCTGATGTTCGTAGTAGAGGCCAATTTGTTCGGCGACCATCTGAAAGGGGTTTCCCCAGAATAATATCTTCCTCATCCATGGATACACGGAGTGATCTTTCCGCCATCGAGAATCAGGTCCGCAAGTTAGTTGATGATTTAAGAAGTGATTCTGTAGATGTTCAAAGATCAGCGACATCAGATATCCGCCTTTTAGCTAAGCACAACATGGAGAACAGGATCATCATTGCAAACTGTGGAGCTATAAACTTGCTGGTTGGTCTTCTTCATTCGCCAGATTCCAAAACCCAAGAGCATGCCGTGACAGCCCTTCTGAATTTGTCAATCAATGATAATAATAAGATTGCCATTGCAAATGCTGATGCTGTTGACCCCCTCATCCATGTCCTTGAGACTGGGAACCCTGAAGCCAAGGAGAATTCAGCGGCTACATTATTCAGTCTCTCGGTTATTGAAGAAAACAAAGTGAGGATTGGAAGATCCGGTGCCATCAAACCTCTCGTCGACCTACTAGGAAATGGGACCCCTCGAGGAAAGAAAGATGCAGCTACTGCATTGTTTAATTTATCCATATTACATGAGAACAAGGCGCGTATTGTGCAGGCTGACGCTGTGAAGTACCTAGTTGAA CTTATGGACCCTGCTGCTGGAATGGTTGACAAAGCTGTGGCTGTTTTGGCAAACCTTGCTACCATACCAGAAGGGAGGACAGCAATTGGTCAAGCGCGTGGTATTCCAGCCCTTGTTGAAGTTGTTGAACTCGGTTCAGCAAGGGGGAAGGAAAATGCGGCTGCAGCATTGCTTCAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTCTCAGCTACTTTCGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTTGAATGGTTGTAAAATTCGATATTGCCCTGC] [+] EMBL C26426 [ CTTTGATAGCTAATTGGTGCGAATCACACAACATTAGGCTTCCTGATCCTATGAAATCCTTGAAATTGAACTTCCCTTTGGCTGCGTCTGCTCTCCAGGATTCGAGCACCACAGGAAGCAGCCCTCTACATCCTACTGTCGCTGCTAAGGGTAATATTCCTGGGTCCCCGGAAGCTGACCTTTATATGAGAAAGCTTGAATAGAGCATCTCCTCCACACAGTGTAGTCCATCAGAATTCTCATGCGCATGTGAACCGTGCTGGGTCATGAAGCCTCCATTAAGCAATCTTCAGNAAATGCTAATGGTTCTGCATCAGATGTTTCAAGGT ] [+] EMBL CF304665 [ CTTTGATAGCTAATTGGTGCGAATCACACAACATTAGGCTTCCTGATCCTATGAAATCCTTGAAATTGAACTTCCCTTTGGCTGCGTCTGCTCTCCAGGATTCGAGCACCACAGGAAGCAGCCCTCTACATCCTACTGTCGCTGCTAAGGGTAATATTCCTGGGTCCCCGGAAGCTGACCTTTATATGAG AAGCTTGAATAGAGCATCTCCTCCACACAGTGTAGTCCATCAGAATTCTCATGCGCATGTGAACCGTGCT GGTCATGAAGCCTCCATTAAGCAATCTTCAGAAAATGCTAATGGTTCTGCATCAGATGTTTCAAGGT ] [-] EMBL CB631051 [ TTTCAAGGTTATCTCTTGCAGGTTCTGAAACAAGAGAGTCTAGTCTGGAAGAAAGAAATGCTGGTTCTATCGGTCAAACTTCAGAACAGTCGATTGAGGAAGCATTTCAAGCATCTAATTTGGACAGGGATTCACATGACCATGTGGGTAGTTCTTCGGTGAATGGTAGCCTTCCAAATAGCGGTCAACTTGATGCAGAATGTGACAATGGGCCAAGCGAAAGGACAAATTACAGTAGTGATGCATCTGGAGAAGTTACAGATGGGCCTTCAGCATCTTCTGCTCCTCAGAGGGAGCATCTAATCCCTTCTAGATTGGCTGATGTTCGTAGTAGAGGCCAATTTGTTCGGCGACCATCTGAAAGGGGTTTCCCCAGAATAATATCTTCCTCGTCCATGGATACACGGAGTGATCTTTCCGCCATCGAGAATCAGGTCCGCAAGTTAGTTGATGATTTAAGAAGTGATTCTGTAGATGTTCAAAGATCAGCGACATCAGATATCCGCCTTTTAGCTAAGCACAACATGGAGAACAGGATCATCATTGCAAACTGTGGAGCTATAAACTTGCTGGTTGGTCTTCTTCATTCGCCAGATTCCAAAACCCAAGAGCATGCCGTGACAGCCCTTCTGAATTTGTCAATCAATGATAATAATAAGATTGCCATTGCAAATGCTGATGCTGTTGACCCCCTCATCCATGTCCTTGAGACTGGGAACCCTGAAGCCAAAGAGAATTCAGCGGCTACATTATTCAGTCTCTCGGTTATTGAAGAAAACAAAGTGAGGAGTGGAAGATCCGGTGCCATCAAACCTCTCGTCGACTTAATAAGAA ] [-] EMBL CB675603 [ TAGTCT GAAGAAAGAAATGCTGGTTCTATCGGTCAAACTTCAGAACAGTCAATGNAGGAAGCATTTCAAGCATCTAATTTGGACAGGGATTCACATGACCATGTGGGTAGTTCTTCGGTGAATGGTAGCCTTCCAAATAGCGGTCAACTTGATGCAGAATGTGACAATGGGCCAAGCGAAAGGACAAATTACAGTAGTGATGCATCTGGAGAAGTTACAGATGGGCCTTCAGCATCTTCTGCTCCTCAGAGGGAGCATCTAATCCCTTCTAGATTGGCTGATGTTCGTAGTAGAGGCCAATTTGTTCGGCGACCATCTGAAAGGGGTTTCCCCAGAATAATATCTTCCTCATCCATGGATACACGGAGTGATCTTTCCGCCATCGAGAATCAGGTCCGCAAGTTAGTTGATGATTTAAGAAGTGATTCTGTAGATGTTCAAAGATCAGCGACATCAGATATCCGCCTTTTAGCTAAGCACAACATGGAGAACAGGATCATCATTGCAAACTGTGGAGCTATAAACTTGCTGGTTGGTCTTCTTCATTCGCCAGATTCCAAAACCCAAGAGCATGCCGTGACAGCCCTTCTGAATTTGTCAATCAATGATAATAATAAGATTGCCATTGCAAATGCTGATGCTGTTGACCCCCTCATCCATGTCCTTGAGACTGGGAACCCTGAAGCCAAGGAGAATTCAGCGGCTACATTATTCAGTCTCTCGGTTATTGAAGAAAACAAAGTGAGGATTGGAAGATCCGGTGCCATCAAACCTCTCGTCGACCTACAAGGAA ] [+] EMBL AU092305 [ GTCCCTAGTTGAANCTTATGCCCCCTGCTGCTGGAATGGTTGACAAAGCTGTGGCTGTTTTGGCAAACCTTGCTACCATACCAGAAGGGAGGACAGCAATTGGTCAAGCGCGTGGTATTCCAGCCCTTGTTGAAGTTGTTGAACTCGGTTCAGCAAGGGGGAAGGAAAATGCGGCTGCAGCATTGCTTCAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTCTCAGCTACTTTCGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTTGAATGGTTGTAAAAaaaa ] consensusID : consensus_12854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [AGGACGAGACAAGGGGGAAGGAAAATGCGGCTGCAGCATTGCTTTAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTTTTAGCTACTTTTGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTAAAAAAAAAAAAAAAAAA] [-] EMBL CA760274 [AGGACGAGACAAGGGGGAAGGAAAATGCGGCTGCAGCATTGCTTTAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAAGAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAGAAGGCACAGGCTCTTTTTAGCTACTTTTGCAGCCAAAGGCACGGGAATTCAGCAAGGAGATGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCATCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATAGTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGTTGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGTATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTATTAACCCTGACATTATGATTGTTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12854#0 AAGAGAGAGAGATCCCCTCTCGCCTCGCCTCCTCCCTCCTGCCTCCTCGATCCCGATCTC 60 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCCTCCTCCGCCGCCTCGCCGCCGCCGCCGTGGACGCCTCAAGGGCTGATGGAAAATTTC 120 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCCCCGAGAACCCTGCTCAATAGTATCTTGCGTATCACTGTCTTAACCTCCGATGGCTCT 180 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ACTGCAAGGCCCAAGCCCATTCAGAAGTACTGCCAAAATGTGTGTGATATCTCAAGCATT 240 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GTGAGCCCTCTCATAGAGGATCTATGTGAGTCTCCTGAAGAGCAACTCAATGAGGTGTTA 300 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 AGGGAGCTTGGCACTGCTATTAACAGAGCTTCAGGGCTTATTGGGAACTGGCAACAGACA 360 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ACCAGCAAAATATATTTTATATGGCAGATTGAATCAGTAATCTCAGATATCCAGGGATGT 420 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCTCTACAGCTGTGCCAGCTTGTTAACTCTCTATTACCTTCTTTGACTGGCCGTGCATGC 480 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ACATGTATTGAGAAACTCCAAGACATAAATTATGAAAACATGTTTGATCTGGTAAAGGAG 540 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCTTCATTGGAGCTAGTTGAGACGGACACAACAAGTCCTGAGAATCTGTCGAGACTATCT 600 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 AGTTCATTGAGTTTGTCAACTAACCTGGAATTTTACATGGAAGCTGTTTCCCTTGAGAAT 660 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CTCAGAGCAAGGGCAATGCGGAGTGAGAACCGTGAAGAAATGGATCTGGCTGACAAGATG 720 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ATCCCCCTGGTCAACTATATGCATGACCACCTTCTGAGGGAAACACAACTGCTTAGCATC 780 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 AATGGGGTGCCCATTCCTGCAGATTTTTGCTGCCCGCTGTCCCTAGAGCTGGTGTCAGAT 840 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CCTGTTATTGTAGCATCTGGTCAGACATATGAGCGGGTTTATATCAAGTTATGGCTTGAT 900 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GAGGGTTTTACTATCTGCCCGAAGACACGCCAAAGACTTGGTCACTCCAATTTAATTCCA 960 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 AATTAAACCGTGAAAGCTTTGATAGCTAATTGGTGCGAATCACACAACATTAGGCTTCCT 1020 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GATCCTATGAAATCCTTGAAATTGAACTTCCCTTTGGCTGCGTCTGCTCTCCAGGATTCG 1080 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 AGCACCACAGGAAGCAGCCCTCTACATCCTACTGTCGCTGCTAAGGGTAATATTCCTGGG 1140 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCCCCGGAAGCTGACCTTTATATGAGAAGCTTGAATAGAGCATCTCCTCCACACAGTGTA 1200 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GTCCATCAGAATTCTCATGCGCATGTGAACCGTGCTGGTCATGAAGCCTCCATTAAGCAA 1260 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCTTCAGAAAATGCTAATGGTTCTGCATCAGATGTTTCAAGGTTATCTCTTGCAGGTTCT 1320 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GAAACAAGAGAGTCTAGTCTGGAAGAAAGAAATGCTGGTTCTATCGGTCAAACTTCAGAA 1380 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CAGTCAATTGAGGAAGCATTTCAAGCATCTAATTTGGACAGGGATTCACATGACCATGTG 1440 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GGTAGTTCTTCGGTGAATGGTAGCCTTCCAAATAGCGGTCAACTTGATGCAGAATGTGAC 1500 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 AATGGGCCAAGCGAAAGGACAAATTACAGTAGTGATGCATCTGGAGAAGTTACAGATGGG 1560 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CCTTCAGCATCTTCTGCTCCTCAGAGGGAGCATCTAATCCCTTCTAGATTGGCTGATGTT 1620 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CGTAGTAGAGGCCAATTTGTTCGGCGACCATCTGAAAGGGGTTTCCCCAGAATAATATCT 1680 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TCCTCATCCATGGATACACGGAGTGATCTTTCCGCCATCGAGAATCAGGTCCGCAAGTTA 1740 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GTTGATGATTTAAGAAGTGATTCTGTAGATGTTCAAAGATCAGCGACATCAGATATCCGC 1800 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CTTTTAGCTAAGCACAACATGGAGAACAGGATCATCATTGCAAACTGTGGAGCTATAAAC 1860 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 TTGCTGGTTGGTCTTCTTCATTCGCCAGATTCCAAAACCCAAGAGCATGCCGTGACAGCC 1920 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 CTTCTGAATTTGTCAATCAATGATAATAATAAGATTGCCATTGCAAATGCTGATGCTGTT 1980 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GACCCCCTCATCCATGTCCTTGAGACTGGGAACCCTGAAGCCAAGGAGAATTCAGCGGCT 2040 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ACATTATTCAGTCTCTCGGTTATTGAAGAAAACAAAGTGAGGATTGGAAGATCCGGTGCC 2100 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ATCAAACCTCTCGTCGACCTACTAGGAAATGGGACCCCTCGAGGAAAGAAAGATGCAGCT 2160 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 ACTGCATTGTTTAATTTATCCATATTACATGAGAACAAGGCGCGTATTGTGCAGGCTGAC 2220 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GCTGTGAAGTACCTAGTTGAACTTATGGACCCTGCTGCTGGAATGGTTGACAAAGCTGTG 2280 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GCTGTTTTGGCAAACCTTGCTACCATACCAGAAGGGAGGACAGCAATTGGTCAAGCGCGT 2340 consensus_12854#1 ------------------------------------------------------------ consensus_12854#0 GGTATTCCAGCCCTTGTTGAAGTTGTTGAACTCGGTTCAGCAAGGGGGAAGGAAAATGCG 2400 consensus_12854#1 -------------------------------AGGACGAGACAAGGGGGAAGGAAAATGCG 29 * ******************** consensus_12854#0 GCTGCAGCATTGCTTCAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAA 2460 consensus_12854#1 GCTGCAGCATTGCTTTAGCTATGTACAAACAGCAGCAGATTTTGCAGTATAGTTCTTCAA 89 *************** ******************************************** consensus_12854#0 GAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAG 2520 consensus_12854#1 GAGGGTGCTGTGCCTCCTCTAGTTGCATTGTCACAGTCAGGCACGCCACGGGCAAGAGAG 149 ************************************************************ consensus_12854#0 AAGGCACAGGCTCTTCTCAGCTACTTTCGCAGCCAAAGGCACGGGAATTCAGCAAGGAGA 2580 consensus_12854#1 AAGGCACAGGCTCTTTTTAGCTACTTTTGCAGCCAAAGGCACGGGAATTCAGCAAGGAGA 209 *************** * ********* ******************************** consensus_12854#0 TGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCA 2640 consensus_12854#1 TGACCTTCTCAGAATTTTTTGTAGGTATACATTAAGCATCTCCTCTGATTCCTTCAGGCA 269 ************************************************************ consensus_12854#0 TCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATA 2700 consensus_12854#1 TCGGCTTGGCTCCTCATATTGTTGTTGTTGGCTCTTGGGTGGCCCTATGTATTGTTTATA 329 ************************************************************ consensus_12854#0 GTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGT 2760 consensus_12854#1 GTCAAATTGAGATTGTGCTCATGTCATACAAATGTTGTGAGCGATGGGTTGGGTGTTTGT 389 ************************************************************ consensus_12854#0 TGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGT 2820 consensus_12854#1 TGTTGAGATGGTGTAACTTTTGGTTCTCTTTTCTTTTTTGAAGGATATCTTTGTTCTTGT 449 ************************************************************ consensus_12854#0 ATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTAT 2880 consensus_12854#1 ATAGGTTGTCCATTGGTAGCAACTTACCTATTCAATGGGATTTTGCTTTGTATATGCTAT 509 ************************************************************ consensus_12854#0 TAACCCTGACATTATGATTGTTTTGAATGGTTGTAAAATTCGATATTGCCCTGC 2934 consensus_12854#1 TAACCCTGACATTATGATTGTTTAAAAAAAAAAAAAAAAAA------------- 550 *********************** ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||