cluster # 12855

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Oryza sativa
cluster # 12855 cluster # 12855 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12855#0 length = 2173 sequences # 10

consensus_12855#1 length = 369 sequences # 1

consensusID : consensus_12855#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2173
fasta sequence

                              [CGAGGCTTCCCACCATCTCGGGCGGGAGGCCTCCTCCTCGCCTCGCCTCGCCACGCCGCGCCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCAGGCGGCGGCGGCGAGGATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAGGTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGACCTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCCGCCGTCGCGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCAC-CTTCCAGGTCGCCGAGCTCACCAACCTCTTCCAGCGGCGTCTCCTTGATGTCCTTGATAAGGTTGAGGTAGATAACCTTCTATTGATCTTATCTGTTGCCAACTTATGCAACAAATCTTGCATGAAACTGCTTGAAAGATGCCTTGATATGGTAGTCCGGTCAAACCTTGACATGATTACTCTTGAGAAGTCATTGCCTCCAGATGTTATCAAGCAGATTATTGATGCACGCCTAAGCCTCGGATTAATTTCACCAGAAAACAAGGGATTTCCTAACAAACATGTGAGGAGGATACACAGAGCCCTTGACTCTGACGATGTAGAGCTAGTCAGGATGCTGCTCACTGAAGGACAGACAAATCTTGATGATGCGTTTGCACTGCACTACGCCGTCGAACATTGTGACTCCAAAATTACAACCGAGCTTTTGGATCTCGCACTTGCAGATGTTAATCATAGAAACCCAAGAGGTTATACTGTTCTTCACATTGCTGCGAGGCGAAGAGAGCCTAAAATCATTGTCTCCCTTTTAACCAAGGGGGCTCGGCCAGCAGATGTTACATTCGATGGGAGAAAAGCGGTTCAAATCTCAAAAAGACTAACAAAACAAGGGGATTACTTTGGGGTTACCGAAGAAGGAAAACCTTCTCCAAAAGATAGGTTATGTATTGAAATACTGGAGCAAGCTGAAAGAAGGGACCCACAACTCGGAGAAGCATCAGTTTCTCTTGCAATGGCAGGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATTATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAATTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTAAATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAAACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATGGATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGGTTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGACAGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGATGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCTACTCACCTGATGGTTGCCTTCTGTCAATTGCCCCCCAAATATATTCTCAATGGTTTAGGCTTGTACAGTATTAGTTCTTACAGCTATTGCCCCGTCAATTGTGAAACGCAGAAGTTTCACTAGTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCAGTGGTTTGCTCGTAAAAATGAGATGATTTCCGTGCTCCCCCAAAAAGGCATAAAAAAGCTTGAGGGGGGGCCG]

[+] EMBL CB638807             [CGAGGCTTCCCACCATCTCGGGCGGGAGGCCTCCTCCTCGCCTCGCCTCGCCACGCCGCGCCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB651314             [                     GCGGGAGGCCTCCTCCTCGCCTCGCCTCGCCACGCCGCGCCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGTAGGCGGCGGCGGCGAGGATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAGGTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGACCTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCCGCCGTCGCGTTCATGGCGCAAGTCCTCTTTCCCGCCT CACTCTTCCATGTCGCCGAGCTCAACAACCTCTTTCATCGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB662395             [                     GCGGGACGTTTCCTCCTCGCCTCGCCTCGCCACGCCGCGCCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCTCGCGCCGCGCCGCCGCCGCCGCAGGCGGCGGCGGCGAGGATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAGGTCGGGTACAAAGCGCTGCTGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCCGCGACCTGCCCAAGGCGGCGTGCCTCTGCGGCGACGAAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK120715             [                                  TCCTCGCCTCGCCTCGCCACGCCGCGCCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCAGGCGGCGGCGGCGAGGATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAGGTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGACCTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCCGCCGTCGCGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCAC CTTCCAGGTCGCCGAGCTCACCAACCTCTTCCAGCGGCGTCTCCTTGATGTCCTTGATAAGGTTGAGGTAGATAACCTTCTATTGATCTTATCTGTTGCCAACTTATGCAACAAATCTTGCATGAAACTGCTTGAAAGATGCCTTGATATGGTAGTCCGGTCAAACCTTGACATGATTACTCTTGAGAAGTCATTGCCTCCAGATGTTATCAAGCAGATTATTGATGCACGCCTAAGCCTCGGATTAATTTCACCAGAAAACAAGGGATTTCCTAACAAACATGTGAGGAGGATACACAGAGCCCTTGACTCTGACGATGTAGAGCTAGTCAGGATGCTGCTCACTGAAGGACAGACAAATCTTGATGATGCGTTTGCACTGCACTACGCCGTCGAACATTGTGACTCCAAAATTACAACCGAGCTTTTGGATCTCGCACTTGCAGATGTTAATCATAGAAACCCAAGAGGTTATACTGTTCTTCACATTGCTGCGAGGCGAAGAGAGCCTAAAATCATTGTCTCCCTTTTAACCAAGGGGGCTCGGCCAGCAGATGTTACATTCGATGGGAGAAAAGCGGTTCAAATCTCAAAAAGACTAACAAAACAAGGGGATTACTTTGGGGTTACCGAAGAAGGAAAACCTTCTCCAAAAGATAGGTTATGTATTGAAATACTGGAGCAAGCTGAAAGAAGGGACCCACAACTCGGAGAAGCATCAGTTTCTCTTGCAATGGCAGGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATTATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAATTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTAAATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAAACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATGGATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGGTTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGACAGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGATGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCTACTCACCTGATGGTTGCCTTCTGTCAATTGCCCCCCAAATATATTCTCAATGGTTTAGGCTTGTACAGTATTAGTTCTTACAGCTATTGCCCCGTCAATTGTGAAACGCAGAAGTTTCACTAGTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCAGTGGTTTGCTCGTAAAAATGAGATGATTT                                            ]
[+] EMBL AY323485             [                                                           GCCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCAGGCGGCGGCGGCGAGGATGGCGGCGAGAGGCTGGAGCTCCGGGGACTCCTCGGCGGCGGCGGCGAGGAGGTGGAGGTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGACCTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCCGCCGTCGCGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCAC CTTCCAGGTCGCCGAGCTCACCAACCTCTTCCAGCGGCGTCTCCTTGATGTCCTTGATAAGGTTGAGGTAGATAACCTTCTATTGATCTTATCTGTTGCCAACTTATGCAACAAATCTTGCATGAAACTGCTTGAAAGATGCCTTGATATGGTAGTCCGGTCAAACCTTGACATGATTACTCTTGAGAAGTCATTGCCTCCAGATGTTATCAAGCAGATTATTGATGCACGCCTAAGCCTCGGATTAATTTCACCAGAAAACAAGGGATTTCCTAACAACCATGTGAGGAGGATACACAGAGCCCTTGACTCTGACGATGTAGAGCTAGTCAGGATGCTGCTCACTGAAGGACAGACAAATCTTGATGATGCGTTTGCACTGCACTACGCCGTCGAACATTGTGACTCCCAAATTACAACCGAGCTTTTGGATCTCGCACTTGCAGATGTTAATCATAGAAACCCAAGAGGTTATACTGTTCTTCACATTGCTGCGAGGCGAAGAGAGCCTAAAATCATTGTCTCCCTTTTAACCAAGGGGGCTCGGCCAGCAGATGTTACATTCGATGGGAGAAAAGGGGTTCAAATCTCAAAAAGACTAACAAAACAAGGGGATTACTTTGGGGTTACCGAAGAAGGAAAACCTTCTCCAAAAGATAGGTTATGTATTGAAATACTGGAGCAAGCTGAAAGAAGGGACCCACAACTCGGAGAAGCATCAGTTTCTCTTGCAATGGCAGGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATTATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAATTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTAAATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAAACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATGGATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGGTTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGACAGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGATGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCT CTCACCTG TGGTTGCCTTCTGTCA                                                                                                                                                                                                                                     ]
[+] EMBL CB654682             [                                                                                                      gtCGGGTGCGCAATGGAGCCGCCGACCAGCCACGTCACCCTCTCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCATGCGGCGTCGGCTAGGATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGCGGAGGTCTGGTACGAGGCGCTGCGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB654681             [                                                                                                             GCGCAACGTAGCCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAGGGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCCGCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCGGGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGCCCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCAGGCTGCGGCGGCGAGGATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAGGTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGACCTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCTGGTGCCACCCCGCCGTCACGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCAC CTTCCAGGTCGCCGAGCTCACCACCCTCTTCCAACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF322826             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCCGCCGTCGCGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCAC CTTCCAGGTCGCCGAGCTCACCAACCTCTTCCAGCGGCGTCTCCTTGATGTCCTTGATAAGGTTGAGGTAGATAACCTTCTATTGATCTTATCTGTTGCCAACTTATGCAACAAATCTTGCATGAAACTGCTTGAAAGATGCCTTGATATGGTAGTCCGGTCAAACCTTGACATGATTACTCTTGAGAAGTCATTGCCTCCAGATGTTATCAAGCAGATTATTGATGCACGCCTAAGCCTCGGATTAATTTCACCAGAAAACAAGGGATTTCCTAACAAACATGTGAGGAGGATACACAGAGCCCTTGACTCTGACGATGTAGAGCTAGTCAGGATGCTGCTCACTGAAGGACAGACAAATCTTGATGATGCGTTTGCACTGCACTACGCCGTCGAACATTGTGACTCCAAAATTACAACCGAGCTTTTGGATCTCGCACTTGCAGATGTTAATCATAGAAACCCAAGAGGTTATACTGTTCTTCACATTGCTGCGAGGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB651315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTACATTCGATGGGAGAAAAGCGGTTCAAATCTCAAAAAGACTAACAAAACAAGGGGATTACTTTGGGGTTACCGAAGAAGGAAAACCTTCTCCAAAAGATAGGTTATGTATTGAAATACTGGAGCAAGCTGAAAGAAGGGACCCACAACTCGGAGAAGCATCAGTTTCTCTTGCAATGGCAGGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATTATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAATTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTAAATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAAACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATGGATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGGTTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGACAGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGATGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCTACTCACCTGATGGTTGCCTTCTGTCAATTGCCCCCCAAATATATTCTCAATGGTTTAGGCTTGTACAGTATTAGTTCTTACAGCTATTGCCCCGTCAATTGTGAAACGCAGAAGTTTCACTAG                                                                                                                                    ]
[-] EMBL CB662396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTCTTGCAATGGCAGGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATTATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAATTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTAAATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAAACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATGGATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGGTTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGACAGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGATGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCTACTCACCTGATGGTTGCCTTCTGTCAATTGCCCCCCAAATATATTTTCAATGGTTTAGGCTCGTCCAGTATTAGTTCTTACAGCTATTGCCCCGTCAATTGTGAAACGCAGAAGTTTCAGTAGTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCAGAAGGTGGCTCGTAAAAATGAGATGATTTCCGTGCTCCCCCAAAAAGGCATAAAAAAGCTTGAGGGGGGGCCG]




>consensus_12855#0
CGAGGCTTCCCACCATCTCGGGCGGGAGGCCTCCTCCTCGCCTCGCCTCGCCACGCCGCG
CCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAG
CCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAG
GGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCC
GCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCG
GGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGC
CCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCAGGCGGCGGCGGCGAG
GATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAG
GTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGAC
CTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCC
GCCGTCGCGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCACCTTCCAGGTCGCCGAGCTC
ACCAACCTCTTCCAGCGGCGTCTCCTTGATGTCCTTGATAAGGTTGAGGTAGATAACCTT
CTATTGATCTTATCTGTTGCCAACTTATGCAACAAATCTTGCATGAAACTGCTTGAAAGA
TGCCTTGATATGGTAGTCCGGTCAAACCTTGACATGATTACTCTTGAGAAGTCATTGCCT
CCAGATGTTATCAAGCAGATTATTGATGCACGCCTAAGCCTCGGATTAATTTCACCAGAA
AACAAGGGATTTCCTAACAAACATGTGAGGAGGATACACAGAGCCCTTGACTCTGACGAT
GTAGAGCTAGTCAGGATGCTGCTCACTGAAGGACAGACAAATCTTGATGATGCGTTTGCA
CTGCACTACGCCGTCGAACATTGTGACTCCAAAATTACAACCGAGCTTTTGGATCTCGCA
CTTGCAGATGTTAATCATAGAAACCCAAGAGGTTATACTGTTCTTCACATTGCTGCGAGG
CGAAGAGAGCCTAAAATCATTGTCTCCCTTTTAACCAAGGGGGCTCGGCCAGCAGATGTT
ACATTCGATGGGAGAAAAGCGGTTCAAATCTCAAAAAGACTAACAAAACAAGGGGATTAC
TTTGGGGTTACCGAAGAAGGAAAACCTTCTCCAAAAGATAGGTTATGTATTGAAATACTG
GAGCAAGCTGAAAGAAGGGACCCACAACTCGGAGAAGCATCAGTTTCTCTTGCAATGGCA
GGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATT
ATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAA
TTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTA
AATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAA
ACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATG
GATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGG
TTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGAC
AGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGA
TGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCTAC
TCACCTGATGGTTGCCTTCTGTCAATTGCCCCCCAAATATATTCTCAATGGTTTAGGCTT
GTACAGTATTAGTTCTTACAGCTATTGCCCCGTCAATTGTGAAACGCAGAAGTTTCACTA
GTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCA
GTGGTTTGCTCGTAAAAATGAGATGATTTCCGTGCTCCCCCAAAAAGGCATAAAAAAGCT
TGAGGGGGGGCCG

consensusID : consensus_12855#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCCCAAAAATATTCTCAATGGTTTAGGCTTGTACAGTATTAGTTCTTGCAGCTATTGCCCCGTCAATTGTGAAACGCAAAAGTTTCACTAGTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCAGTGGTTTGCTCGTAAAAATGAGATGATTTCTTGGCTCCCAAATCTGATAGACTGATGAAATAGACTCTCTGCTTGCTAGTGGTCACCAGAGATGGCTGAAGGCCATTGAAGCATCTACTCTACCAGATATGCACTAAAAACTACACTGTACTTGTTACATCTGGATGAAGCAGTAGAACAGTAAACTCATCTCTTTACTGTTCCCTCTGCCATGTCGAG]

[-] EMBL CB638808             [CCCCAAAAATATTCTCAATGGTTTAGGCTTGTACAGTATTAGTTCTTGCAGCTATTGCCCCGTCAATTGTGAAACGCAAAAGTTTCACTAGTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCAGTGGTTTGCTCGTAAAAATGAGATGATTTCTTGGCTCCCAAATCTGATAGACTGATGAAATAGACTCTCTGCTTGCTAGTGGTCACCAGAGATGGCTGAAGGCCATTGAAGCATCTACTCTACCAGATATGCACTAAAAACTACACTGTACTTGTTACATCTGGATGAAGCAGTAGAACAGTAAACTCATCTCTTTACTGTTCCCTCTGCCATGTCGAG]




>consensus_12855#1
CCCCAAAAATATTCTCAATGGTTTAGGCTTGTACAGTATTAGTTCTTGCAGCTATTGCCC
CGTCAATTGTGAAACGCAAAAGTTTCACTAGTGCTTGTACTCGAGGTGTAATACAAGTGC
TTGAATTTTGAGTTGTACTTGGAATTTCCAGTGGTTTGCTCGTAAAAATGAGATGATTTC
TTGGCTCCCAAATCTGATAGACTGATGAAATAGACTCTCTGCTTGCTAGTGGTCACCAGA
GATGGCTGAAGGCCATTGAAGCATCTACTCTACCAGATATGCACTAAAAACTACACTGTA
CTTGTTACATCTGGATGAAGCAGTAGAACAGTAAACTCATCTCTTTACTGTTCCCTCTGC
CATGTCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12855#0      CGAGGCTTCCCACCATCTCGGGCGGGAGGCCTCCTCCTCGCCTCGCCTCGCCACGCCGCG 60
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CCGCGACGCGACGCGCCGTGGTCAGCTGGTCGCCGGTGCGGGTGCGGGTGCGCAATGGAG 120
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CCGCCGACCAGCCACGTCACCAACGCGTTCTCCGACTCGGACAGCGCGTCCGTGGAGGAG 180
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GGGGGCGCCGACGCGGACGCCGACGTGGAGGCGCTCCGCCGCCTCTCCGACAACCTCGCC 240
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GCGGCGTTCCGCTCGCCCGAGGACTTCGCGTTCCTCGCCGACGCGCGCATCGCCGTCCCG 300
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GGCGGCGGCGGCGGCGGCGGCGACCTGCTGGTGCACCGCTGCGTGCTCTCCGCGCGGAGC 360
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CCCTTCCTGCGCGGCGTCTTCGCGCGCCGCGCCGCCGCCGCCGCAGGCGGCGGCGGCGAG 420
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GATGGCGGCGAGAGGCTGGAGCTCCGGGAACTCCTCGGCGGCGGCGGCGAGGAGGTGGAG 480
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GTCGGGTACGAGGCGCTGCGGCTGGTGCTCGACTACCTCTACAGCGGCCGCGTCGGCGAC 540
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CTGCCCAAGGCGGCGTGCCTCTGCGTCGACGAGGACTGCGCCCACGTCGGGTGCCACCCC 600
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GCCGTCGCGTTCATGGCGCAGGTCCTCTTCGCCGCCTCCACCTTCCAGGTCGCCGAGCTC 660
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      ACCAACCTCTTCCAGCGGCGTCTCCTTGATGTCCTTGATAAGGTTGAGGTAGATAACCTT 720
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CTATTGATCTTATCTGTTGCCAACTTATGCAACAAATCTTGCATGAAACTGCTTGAAAGA 780
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      TGCCTTGATATGGTAGTCCGGTCAAACCTTGACATGATTACTCTTGAGAAGTCATTGCCT 840
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CCAGATGTTATCAAGCAGATTATTGATGCACGCCTAAGCCTCGGATTAATTTCACCAGAA 900
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      AACAAGGGATTTCCTAACAAACATGTGAGGAGGATACACAGAGCCCTTGACTCTGACGAT 960
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GTAGAGCTAGTCAGGATGCTGCTCACTGAAGGACAGACAAATCTTGATGATGCGTTTGCA 1020
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CTGCACTACGCCGTCGAACATTGTGACTCCAAAATTACAACCGAGCTTTTGGATCTCGCA 1080
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CTTGCAGATGTTAATCATAGAAACCCAAGAGGTTATACTGTTCTTCACATTGCTGCGAGG 1140
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      CGAAGAGAGCCTAAAATCATTGTCTCCCTTTTAACCAAGGGGGCTCGGCCAGCAGATGTT 1200
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      ACATTCGATGGGAGAAAAGCGGTTCAAATCTCAAAAAGACTAACAAAACAAGGGGATTAC 1260
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      TTTGGGGTTACCGAAGAAGGAAAACCTTCTCCAAAAGATAGGTTATGTATTGAAATACTG 1320
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GAGCAAGCTGAAAGAAGGGACCCACAACTCGGAGAAGCATCAGTTTCTCTTGCAATGGCA 1380
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GGTGAGAGTCTACGAGGAAGGTTGCTGTATCTTGAAAACCGAGTTGCTTTGGCGAGGATT 1440
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      ATGTTTCCGATGGAGGCAAGAGTAGCAATGGATATTGCTCAAGTGGATGGAACTTTGGAA 1500
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      TTTAACCTGGGTTCTGGTGCAAATCCACCTCCTGAAAGACAACGGACAACTGTTGATCTA 1560
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      AATGAAAGTCCTTTCATAATGAAAGAAGAACACTTAGCTCGGATGACGGCACTCTCCAAA 1620
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      ACAGTGGAGCTCGGGAAACGCTTTTTCCCGCGATGTTCGAACGTGCTCGACAAGATCATG 1680
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      GATGATGAAACTGATCCGGTTTCCCTCGGAAGAGACACGTCCGCGGAGAAGAGGAAGAGG 1740
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      TTTCATGACCTGCAGGATGTTCTTCAGAAGGCATTCCACGAGGACAAGGAGGAGAATGAC 1800
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      AGGTCGGGGCTCTCGTCGTCGTCGTCATCGACATCGATCGGGGCCATTCGACCAAGGAGA 1860
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      TGAACACCATTGCTCCCAAATAGTTGCCATATTGATAGCTAACTGTCCTCCTGGAGCTAC 1920
consensus_12855#1      ------------------------------------------------------------
                                                                                   

consensus_12855#0      TCACCTGATGGTTGCCTTCTGTCAATTGCCCCCCAAATATATTCTCAATGGTTTAGGCTT 1980
consensus_12855#1      ------------------------------CCCCAAAAATATTCTCAATGGTTTAGGCTT 30
                                                     ******* **********************

consensus_12855#0      GTACAGTATTAGTTCTTACAGCTATTGCCCCGTCAATTGTGAAACGCAGAAGTTTCACTA 2040
consensus_12855#1      GTACAGTATTAGTTCTTGCAGCTATTGCCCCGTCAATTGTGAAACGCAAAAGTTTCACTA 90
                       ***************** ****************************** ***********

consensus_12855#0      GTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCA 2100
consensus_12855#1      GTGCTTGTACTCGAGGTGTAATACAAGTGCTTGAATTTTGAGTTGTACTTGGAATTTCCA 150
                       ************************************************************

consensus_12855#0      GTGGTTTGCTCGTAAAAATGAGATGATTTCCGTGCTCCC---CCAAAAAGGC--ATAAAA 2155
consensus_12855#1      GTGGTTTGCTCGTAAAAATGAGATGATTTCTTGGCTCCCAAATCTGATAGACTGATGAAA 210
                       ******************************   ******    *  * ** *  ** ***

consensus_12855#0      AAGCTTGAGGGGGGGCCG------------------------------------------ 2173
consensus_12855#1      TAGACTCTCTGCTTGCTAGTGGTCACCAGAGATGGCTGAAGGCCATTGAAGCATCTACTC 270
                        **  *    *   **                                            

consensus_12855#0      ------------------------------------------------------------
consensus_12855#1      TACCAGATATGCACTAAAAACTACACTGTACTTGTTACATCTGGATGAAGCAGTAGAACA 330
                                                                                   

consensus_12855#0      ---------------------------------------
consensus_12855#1      GTAAACTCATCTCTTTACTGTTCCCTCTGCCATGTCGAG 369