These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2963 fasta sequence [GGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGAGGGATTTGGGGGTTCAGCTGAACCCCCTCCATGCCGCGCGACGCTAGGTCAGTCACTGGTTGCCAGGAGATACTCGGAGCAGCCGTGAATTGCTGATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAGCCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTTGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGA-GGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA-CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG-TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCACCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAATACCTGTTCACTCTGTACCTTTNTGCACTTTCCTTTTTCCTGTAGCTGTGGATTGCTGTAATTGTCTTGCTCTTTCCTGTAGCTGTGATTGCTGTGTACTGCTGATCTGTCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066276 [GGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGAGGGATTTGGGGGTTCAGCTGAACCCCCTCCATGCCGCGCGACGCTAGGTCAGTCACTGGTTGCCAGGAGATACTCGGAGCAGCCGTGAATTGCTGATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAGCCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTTGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGA GGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGTTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCACCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAATAC ] [+] EMBL CB640288 [GGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGAG ] [+] EMBL OS1069A [ CCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGAGGGCTGCCAATGCACTGACTGTGATAGAATTTGA ] [+] EMBL CF310558 [ GACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGA ] [-] EMBL CB633693 [ CGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGGCATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGGTTAACCTGCTGCAAAGTGAAATTA TTTGTTAAAaaaaaaga ] [+] EMBL AU101514 [ ATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCAT ] [+] EMBL AU101515 [ TGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAAaaaa ] [+] EMBL AU096728 [ AGAAGAGAATCCGTGCAGAGGNCCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTACCATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAAaaa ] [+] EMBL AU096727 [ AGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTGTTTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAA ] [+] EMBL AU091831 [ ACAGGCCATTTCAGAACTA CATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAAaaaaaaaaa ] [+] EMBL AU181281 [ GGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTG TTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCNCCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAANACCTGTTCACTCTGTACCTTTNTGCACTTTCCTTTTTCCTGTAGCTGTGGATTGCTGTAATTGTCTTGCTCTTTCCTGTAGCTGTGATTGCTGTGTACTGCTGATCTGTCAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||