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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 973 fasta sequence
[ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG-GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG-AGCTGGCGGCGCTG-TTCCGCAGCG-TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT-ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC-CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT-CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCGACTCCAAAAAA]
[+] EMBL AK099962 [ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTC ]
[+] EMBL AK067214 [ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGACTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTC ]
[+] EMBL C97718 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGNCGCCGCCGCGAAG CCCGCCCGNCCGCGG GGAGNGACGAGACGGAGCGGGTTTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTGTTTCCGCAACGTTGGGCCACGCCGTCAACGACGACGAGGTTGCGCGGATTATNCAGGAGGCCGACTTCGACGGCGACGGNTAAAATCTCGTTCGGCGATTTC ]
[+] EMBL AU163307 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTTAGATCTCGCCGCCGCCGCCGCCGCGAA CCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTNGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTTGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGG ]
[+] EMBL AU082898 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCNTCGGATCTCGCCGCCGCCGCCGCCGCGAAG CCCGACCG CCGCGG GGAG GACGAGACGGAGCGGGTNTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTNGCGGGCCG AGCTNGCGGCGGTG TTCCGCANCG TTGGCCACG CGTNAACGACGACGAGGTTG NCGGATTAT CA GAGGCCGACTCCa ]
[+] EMBL AU069385 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGANGCCGTCNGATCTCGCCGCCGCCGCCGCCGCGAA CCCCGCCCGCCCGCGGCGTAN GACGAGACGGANCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCANCG TGGGCCACGCCGTCACCGACGACGANGTGGCGCGGATGATGCAGGATGCCG ]
[+] EMBL CB663831 [ AAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCG ]
[+] EMBL AU082899 [ CGAACGGCGANGGGCGGATCTCGCGGGCCGAAGTTGGCGGCGTTG TTCCGNAGCG TGGGCCACGCCGTCACCGACGACGAGTTGNCGCGGATGATGCAGGAGGCCGANTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGCNCCGGCGACGCCGCCGCCGCCGAGGAGGACCTG GCNGNCCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCGACTCCAAAAAA]
[-] EMBL CB663832 [ GGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTTGCCGCCATCAGCGCCCCGCCGC CCGGNGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATTGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAA ]
[+] EMBL AU163308 [ TCGGCGANTTCGCCGCAATCAGCGCCCCGACGC CCCGCGACGCCGCCGCCGCCGAGGAGGACCT GCCAGNCCTTCGGCGTGTTCGACGCCGACGGCAACGGCNTCATCACCCCCGCCGAGCTGGCCCGCGTACCTCCNCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCGACTCCAAAAAA]
consensusID : consensus_12858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[TTCTTGTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCRATTCCGGAGGCGGCCATTAACGTTGGACTGGTCGCCGAGGCCGTCGATTCTCGCCGCCGGAAGGCCCGCCCGGCCGAGGGGGGACCGAGGACCGGGGCGGTTTTTCGGAGTTCGCCGCGACGGACCGGGCGGTTCTCCGGGGCCGGCTGGGCCTGTTCCGGGTGGGCC]
[+] EMBL OS37947 [TTCTTGTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCRATTCCGGAGGCGGCCATTAACGTTGGACTGGTCGCCGAGGCCGTCGATTCTCGCCGCCGGAAGGCCCGCCCGGCCGAGGGGGGACCGAGGACCGGGGCGGTTTTTCGGAGTTCGCCGCGACGGACCGGGCGGTTCTCCGGGGCCGGCTGGGCCTGTTCCGGGTGGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12858#0 ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTT 60
consensus_12858#1 ----------------------------------------------------TTCTTGTT 8
*** **
consensus_12858#0 GTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCG 120
consensus_12858#1 GTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCG 68
************************************************************
consensus_12858#0 CAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGT 180
consensus_12858#1 CAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCRATTCCGGAGGCGGCCATTAACGT 128
************************************ ** * ********* ** *****
consensus_12858#0 -GGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGC 239
consensus_12858#1 TGGACTGGTCGCCGAGGCCGTCGATTCTCGCCGCCG----------GAAGGCCCGCCCGG 178
********************** *********** **** ********
consensus_12858#0 CCGCGGCGGAGGACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGC 299
consensus_12858#1 CCGAGGGGGGACCGAGGACCGGGGCGGTTTTTCGGA-GTTCGCCGCGACGGAC--CGGGC 235
*** ** ** *** * * *** ** *** ***** ***** * * *****
consensus_12858#0 GGATCTCGCGGGCCGAGCTGGCGGCGCTGTTCCGCAGCGTGGGCCACGCCGTCACCGACG 359
consensus_12858#1 GGTTCTCCGGGGCCGGCTGGGC----CTGTTCCG---GGTGGGCC--------------- 273
** **** ****** *** ******** *******
consensus_12858#0 ACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCTACATCTCGCTCG 419
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 GCGAGTTCGCCGCCATCAGCGCCCCGCCGCCCGGCGACGCCGCCGCCGCCGAGGAGGACC 479
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGC 539
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TGGCCCGCGTCCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGA 599
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGA 659
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCC 719
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 GCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTG 779
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGT 839
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATC 899
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 GTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAAT 959
consensus_12858#1 ------------------------------------------------------------
consensus_12858#0 TCGACTCCAAAAAA 973
consensus_12858#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||