These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 973 fasta sequence [ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG-GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG-AGCTGGCGGCGCTG-TTCCGCAGCG-TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT-ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC-CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT-CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCGACTCCAAAAAA] [+] EMBL AK099962 [ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTC ] [+] EMBL AK067214 [ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGACTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTC ] [+] EMBL C97718 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGNCGCCGCCGCGAAG CCCGCCCGNCCGCGG GGAGNGACGAGACGGAGCGGGTTTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTGTTTCCGCAACGTTGGGCCACGCCGTCAACGACGACGAGGTTGCGCGGATTATNCAGGAGGCCGACTTCGACGGCGACGGNTAAAATCTCGTTCGGCGATTTC ] [+] EMBL AU163307 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTTAGATCTCGCCGCCGCCGCCGCCGCGAA CCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTNGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTTGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGG ] [+] EMBL AU082898 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCNTCGGATCTCGCCGCCGCCGCCGCCGCGAAG CCCGACCG CCGCGG GGAG GACGAGACGGAGCGGGTNTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTNGCGGGCCG AGCTNGCGGCGGTG TTCCGCANCG TTGGCCACG CGTNAACGACGACGAGGTTG NCGGATTAT CA GAGGCCGACTCCa ] [+] EMBL AU069385 [ GCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGANGCCGTCNGATCTCGCCGCCGCCGCCGCCGCGAA CCCCGCCCGCCCGCGGCGTAN GACGAGACGGANCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCANCG TGGGCCACGCCGTCACCGACGACGANGTGGCGCGGATGATGCAGGATGCCG ] [+] EMBL CB663831 [ AAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGTGGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGCCCGCGGCGGAG GACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGCGGATCTCGCGGGCCG AGCTGGCGGCGCTG TTCCGCAGCG TGGGCCACGCCGTCACCGACGACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGC CCGGCGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCG ] [+] EMBL AU082899 [ CGAACGGCGANGGGCGGATCTCGCGGGCCGAAGTTGGCGGCGTTG TTCCGNAGCG TGGGCCACGCCGTCACCGACGACGAGTTGNCGCGGATGATGCAGGAGGCCGANTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTCGCCGCCATCAGCGCCCCGCCGCNCCGGCGACGCCGCCGCCGCCGAGGAGGACCTG GCNGNCCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCGACTCCAAAAAA] [-] EMBL CB663832 [ GGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCT ACATCTCGCTCGGCGAGTTTGCCGCCATCAGCGCCCCGCCGC CCGGNGACGCCGCCGCCGCCGAGGAGGACCTGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGCTGGCCCGCGT CCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATTGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAA ] [+] EMBL AU163308 [ TCGGCGANTTCGCCGCAATCAGCGCCCCGACGC CCCGCGACGCCGCCGCCGCCGAGGAGGACCT GCCAGNCCTTCGGCGTGTTCGACGCCGACGGCAACGGCNTCATCACCCCCGCCGAGCTGGCCCGCGTACCTCCNCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGATCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGATGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCCGCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTGTAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGTTGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATCGTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAATTCGACTCCAAAAAA] consensusID : consensus_12858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TTCTTGTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCRATTCCGGAGGCGGCCATTAACGTTGGACTGGTCGCCGAGGCCGTCGATTCTCGCCGCCGGAAGGCCCGCCCGGCCGAGGGGGGACCGAGGACCGGGGCGGTTTTTCGGAGTTCGCCGCGACGGACCGGGCGGTTCTCCGGGGCCGGCTGGGCCTGTTCCGGGTGGGCC] [+] EMBL OS37947 [TTCTTGTTGTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCGCAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCRATTCCGGAGGCGGCCATTAACGTTGGACTGGTCGCCGAGGCCGTCGATTCTCGCCGCCGGAAGGCCCGCCCGGCCGAGGGGGGACCGAGGACCGGGGCGGTTTTTCGGAGTTCGCCGCGACGGACCGGGCGGTTCTCCGGGGCCGGCTGGGCCTGTTCCGGGTGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12858#0 ACCAGATCGCAATCCGAAATTCAGAGATCCAAATTCGCCCACAAGAATTCACCTCTGCTT 60 consensus_12858#1 ----------------------------------------------------TTCTTGTT 8 *** ** consensus_12858#0 GTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCG 120 consensus_12858#1 GTTGATCGGAGAGGAGGAGGTGTTCGTCGAGATGGGCAAGGTGAGGGCGTTCTTCTCGCG 68 ************************************************************ consensus_12858#0 CAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCGATGCGGGAGGCGGCGATGAACGT 180 consensus_12858#1 CAAGGGCAGGGGGAACAGCAGCGGCAGGTCCAGGTCRATTCCGGAGGCGGCCATTAACGT 128 ************************************ ** * ********* ** ***** consensus_12858#0 -GGACTGGTCGCCGAGGCCGTCGGATCTCGCCGCCGCCGCCGCCGCGAAGCCCCGCCCGC 239 consensus_12858#1 TGGACTGGTCGCCGAGGCCGTCGATTCTCGCCGCCG----------GAAGGCCCGCCCGG 178 ********************** *********** **** ******** consensus_12858#0 CCGCGGCGGAGGACGAGACGGAGCGGGTGTTCAGGAAGTTCGACGCGAACGGCGACGGGC 299 consensus_12858#1 CCGAGGGGGGACCGAGGACCGGGGCGGTTTTTCGGA-GTTCGCCGCGACGGAC--CGGGC 235 *** ** ** *** * * *** ** *** ***** ***** * * ***** consensus_12858#0 GGATCTCGCGGGCCGAGCTGGCGGCGCTGTTCCGCAGCGTGGGCCACGCCGTCACCGACG 359 consensus_12858#1 GGTTCTCCGGGGCCGGCTGGGC----CTGTTCCG---GGTGGGCC--------------- 273 ** **** ****** *** ******** ******* consensus_12858#0 ACGAGGTGGCGCGGATGATGCAGGAGGCCGACTCCGACGGCGACGGCTACATCTCGCTCG 419 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 GCGAGTTCGCCGCCATCAGCGCCCCGCCGCCCGGCGACGCCGCCGCCGCCGAGGAGGACC 479 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TGCGCCACGCCTTCGGCGTGTTCGACGCCGACGGCAACGGCGTCATCACCCCCGCCGAGC 539 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TGGCCCGCGTCCTCCGCGGCATCGGCGAGGCCGCCACCGTCGCCCAGTGCCGCCGCATGA 599 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TCGACGGCGTCGACCGCAACGGCGACGGCCTCATCAACTTCGAGGAGTTCAAGCTCATGA 659 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TGGCCGCCGGCGCCGGCTTCGGCAGGATCGCTTCTTGATTCCAAATTCAATCCCTCCTCC 719 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 GCCATGGATGATGGACACCTCACCGCTCATGTTCTTTCATTCTTTAATTATTATTAATTG 779 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TAAATATAGATAAATCACGCGGAATGATTAATTACCGCGTAGTAATTTCTACTAATTAGT 839 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TGCAGATACCACACGAACATAATCCCGTTTGGTTTTGTACAGAGTGTACACACTGGAATC 899 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 GTAATAACGATCCCCCAAAAAAAATATATATCAAATTTCAGTCTTATTATGGCATCGAAT 959 consensus_12858#1 ------------------------------------------------------------ consensus_12858#0 TCGACTCCAAAAAA 973 consensus_12858#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||