These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1703 fasta sequence [GCAGTTGACAATCTCGGCGGAAAGCGGCGGCGGCGGCGACGGCGGCGGCTGCGGGTCCGATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGAT-CGATGACTCTGTCAT-GGGGTCCTCTAAGAAGA-TGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTC-AG-AAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTT-ATGGCTAAGATTT--CCTGATCCCAGCGGTTGTTTCAAGAGTGTTGAATT-CCCATT-CAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGACCGAGAGTGATTCTGCTTCCCCAACCGCTGCTACTAACTAATAGTCATAGTTGGCTTCGCTGGTTATGTATCCTTATAGTATTTTCTTTTAGATGGAGTGGACCTTATGCTTTAGCCACCTGTGGGCACTCATATTACAATGCCCTCGAGATGTGCTGCTGAGCATGGAGTTCCTCCGGTGGTGATGATGATGAAAGTTAGGTCTAGTTCAGATAATTTATTTGCTAGGAAGGAGCAGCAAAAATGAGAGTAATCAGTCGGAAATGTTGGGTTTTTTTTCATCTTTAATGCAATTGCTGAATTAGTTGTGGCACGTCTGAATTCATAATCAGATTGGCTGTGCACTTTGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073772 [GCAGTTGACAATCTCGGCGGAAAGCGGCGGCGGCGGCGATGGCGGCGGCTGCGGGTCCGATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGAT CGATGACTCTGTCAT GGGGTCCTCTAAGAAGA TGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTC AG AAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTT ATGGCTAAGATTT CCTGATCCCAGCGGTTGTTTCAAGAGTGTTGAATT CCCATT CAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGACCGAGAGTGATTCTGCTTCCCCAACCGCTGCTACTAACTAATAGTCATAGTTGGCTTCGCTGGTTATGTATCCTTATAGTATTTTCTTTTAGATGGAGTGGACCTTATGCTTTAGCCACCTGTGGGCACTCATATTACAATGCCCTCGAGATGTGCTGCTGAGCATGGAGTTCCTCCGGTGGTGATGATGATGAAAGTTAGGTCTAGTTCAGATAATTTATTTGCTAGGAAGGAGCAGCAAAAATGAGAGTAATCAGTCGGAAATGTTGGGTTTTTTTTCATCTTTAATGCAATTGCTGAAT ] [+] EMBL AK062812 [GCAGTTGACAATCTCGGCGGAAAGCGGCGGCGGCGGCGACGGCGGCGGCTGCGGGTCCGATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGAT CGATGACTCTGTCAT GGGGTCCTCTAAGAAGA TGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTC AG AAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCAT ] [+] EMBL AU069070 [ CTCGGCGGAAAGCGGCGGCGGCGGCGACGGNGGCGGCTGCGGGTCCGATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACNGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTNGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGAT CGATGACTCTGTCAT NGGGTCCTCTAAGAAGA TGAAGCAACTA ] [+] EMBL OSS10347A [ GCGGCGGCGGCGACGGCGGCGGCTGCGGGTCCGATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGATCCGATGACTCTGTCATNGGGGTCCTCTAAGAAGATTGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGGACATTGAG ] [+] EMBL C72227 [ AAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGAT CGATGACTCTGTCAT GGGGTCCTCTAAGAAGA TGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACA GGCTAGAATATCTGCACAGTC AG AAGCCAGCAATTATACACAGGG TTTAAAATGTGNCAATATATTCATAAATGG AATCATGGGGAAGTG AGGTTTGTGATTTT GTTTTGC ACATTCATGCAGCAccg ] [+] EMBL CF304559 [ AGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGAT CGATGACTCTGTCAT GGGGTCCTCTAAGAAGA TGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTC AG AAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAA ] [+] EMBL CA752639 [ GATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGAGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAAGGCTAGAATATCTGCACAGTCAAGAAAGCCAACAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGGAATCATGGGAAAGTGAAGATTGGTGATTTTGGGTTGGCAA ] [+] EMBL AU069071 [ CTGTTAACATAATCACAGAGTTGTTCNCATCCGGGGGCTTGACACNNTACCGCAGAATGCACAAGAAAGTGANTATGAAGGCTATGAANCGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTC AG AAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAA ] [+] EMBL AU093911 [ tgtTTGATTTNATGGCTAAGATTTTCCCTGATCCNAGCGGTTGTTNCAAGAGTGTTGAATTCCCCATTCCAATTTGACTGAAGATACAAGTCTTTCTGTGNCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGACCGAGAGTGATTCTGCTTCCCCAACCGCTGCTACTAACTAATAGTCATAGTT GNTTCGCTGGTTATGTATCCTTATAGTATTTTCTTTTAGATGGAGTGGACCTTATGCTTTAGCCACCTGTGGGCACTCATATTACAATGCCCTCGAGATGTGCTGCTGAGCATGGAGTTCCNCCGGTGGTGATGATGATGAAAGTTAGGTCTAGTTCAGATAATTTATTTGCTAGGAAGGAGCAGCAAAAATGAGAGTAATCAGTCGGAAATGTTGGGTTTTTTTTCATCTTTAATGCAATTGCTGAATTAGTTGTGGCACGTCTGAATTCATAATCAGATTGGCTGTGCACTTTGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000344 [ TGAATT CCCATT CAATTTGACTGAAGATACAACTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGACCGAGAGTGATTCTGCTTCCCCAACCGCTGCTACTAACTAATAGTCATAGTTGGCTTCGCTGGTTATGTATCCTTATAGTATTTTCTTTTAGATGGAGTGGACCTTATGCTTTAGCCACCTGTGGGCACTCATATTACAATGCCCTCGAGATGTGCTGCTGAGCATGGAGTTCCTCCGGTGGTGATGATGATGAAAGTTAGGTCTAGTTCAGATAATTTATTTGCTAGGAAGGAGCAGCAAAAATGAGAGTAATCAGTCGGAAATGTTGGGTTTTTTTTCATCTTTAATGCAATTGCTGAATTAGTTGTGGCACGTCTGAATTCATAATCAGATTGGCTGTGCAaaaaaaaaa ] [+] EMBL CA999206 [ AATT CCCATT CAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGACCGAGAGTGATTCTGCTTCCCCAACCGCTGCTACTAACTAATAGTCATAGTTGGCTTCGCTGGTTATGTATCCTTATAGTATTTTCTTTTAGATGGAGTGGACCTTATGCTTTAGCCACCTGTGGGCACTCATATTACAATGCCCTCGAGATGTGCTGCTGAGCATGGAGTTCCTCCGGTGGTGATGATGATGAAAGTTAGGTCTAGTTCAGATAATTTATTTGCTAGGAAGGAGCAGCAAAAATGAGAGTAATCAGTCGGAAATGTTGGGTTTTTTTTCATCTTTAATGGCATTGCTGAATTAGTTGTGGCACGTCTGAATTCATAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||