These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCTCTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTCTCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAAAAAAAAA] [+] EMBL BM038182 [TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCTCTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTCTCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAAAAAAAAA] consensusID : consensus_1287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [ACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGAGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGGGTGGTTTAAAAAAAAAAAAAAAAAACATTGTCATGCCGT] [-] EMBL CF300071 [ACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGAGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGGGTGGTTTAAAAAAAAAAAAAAAAAACATTGTCATGCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1287#0 TGNGGGCATCAGAAGTTCGAGACCCTTTCTGTACCTGCCCCCACTCACCGTGGAGGATCT 60 consensus_1287#1 ------------------------------------------------------------ consensus_1287#0 CTTGTAGCAGATCGAGTACCTGCTTCGGTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAA 120 consensus_1287#1 ------------------------------------------------------------ consensus_1287#0 GGTTGGGTTCGTCTACCGCGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTG 180 consensus_1287#1 --------------------------------------------ACGATGGCAGGTATTG 16 **************** consensus_1287#0 GACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGACGCCACCCAGGTGCTCAAGGAGTC 240 consensus_1287#1 GACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACNCAGGTGCTCAAGGAG-C 75 ************************************ ***** *************** * consensus_1287#0 TCGAGGAGGCCACAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTNGACAAC 300 consensus_1287#1 TCGAGGAGGCCA-AGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAAC 134 ************ **************************************** ****** consensus_1287#0 GTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCT 360 consensus_1287#1 GTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCT 194 ************************************************************ consensus_1287#0 GGTGGCAACTAAGCTAAGATCAANCCTCGCGCTGGTGGATTGCTGCCTATAATAATAGTA 420 consensus_1287#1 GG-AGAAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTA 253 ** * ***************** * ********************************** consensus_1287#0 TGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTT 480 consensus_1287#1 TGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTT 313 ************************************************************ consensus_1287#0 ATTTTACAGTTTGGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCACCAAA 540 consensus_1287#1 ATTTTACAGGGTGGTT-TAAAAAAAAAAAAAAAAAACATTGTCATGCCGT---------- 362 ********* ***** ******************* * * consensus_1287#0 AAAAAAA 547 consensus_1287#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||