cluster # 12870

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Oryza sativa
cluster # 12870 cluster # 12870 Sequences # 11 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12870#0 length = 775 sequences # 11
consensusID : consensus_12870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 775
fasta sequence
                              [TNGGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC-GCGCAGATACCGACG-AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC-TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT--GGGAAGTTCAT-CCCT-GGGTGCTATA-CGC-TGGCTGTCGCGG-AGGAGC-TTCCGG-AGGAGTA-CCAAA--GCGTTTGCC-AAGAC--AACAATGTGCAATACTT-CCC--TCCGAAGCGTG-TCTGAACAAGCCATAT-ATAGT-CCCTTC-AAGAG-AACAGCGTGCCTG-AAC-AACCT-ATATTCCCTTCGGAGCGTCACGATCCTG-AAGC-AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAACGCAAAAAAAAATTCTTAGCTAGGAATACGTGCGCTTCTATGCGCATTCATATTACCTGCNNTTTTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU160954             [TNGGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU092002             [  GGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTC TCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCAT CCCT GGGTGCTATA NGC TGGCTGTCGCGG AGGAGCTTTCCGGAAGGAGTA CCAAAANGCGTTTGCCAAAGACCAAACAATGTGCAATACTT CCCCTTCCGAAGCGTGTTCTGAACAAGCCATATAATAGTNCCCTTCAAAGAGAAACAGCGTGCCTGAAACAAACCTAATATTCCCTTCGGAGCGTCACGATCCTGAAAGCAAAATACTAT                                                                                                                                                                                                                                               ]
[+] EMBL AU068840             [        AGAGGAAATNGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCTTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA C                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU166054             [    gtccgaAGGAAATTGNAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGCCGCCGCCGNCGCCGGTGCCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA CCAAA  GCGTTTGCC AAGAC  AACAATGTGCAATACTT CCC  TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAACGCAAAAAAAAA                                                                                     ]
[+] EMBL C74301               [                  GGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTC TCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTNGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C73792               [                    AGAGGAGAGAGATANAGANAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTTGGCCACGAGCNCCGCGCGTNCCTGCGCTGCNGCCTCGTCAAGACCTACGATCAGTTCATGGAGCGAGGCTGCNAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAACTTGCACCACCCCCAACTTCACAGGAATTATCTCCGTGATNGATCCTGGTAAGAGTNGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU094703             [                                                                                            tgnCGACGGGCCCAAGTACGGCGCAGATACCGACGAAGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA CCAAA  GCGTTTGCC AAGAC  AACAATGTGCAATACTT CCC  TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAA   AAAAAA                                                                                        ]
[+] EMBL AU068841             [                                                                                                                                                                                                                      CCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCNCAGGAATAATCTCCNTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCNT CCCT GGGTGCTATN CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTN CCAAA  GCGTTTGCC AAGAC  AACAATGTGCAATACTT CCC  TCCGAAGCGTG TCTGANCAAGCCATAT ATNGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATT CCTTCGGAGCGTCNCGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAaaaa                                                                                                                     ]
[+] EMBL CF313060             [                                                                                                                                                                                                                                                                                                                         GGGCTGCTCGTTGGTTGAGAATT  GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA CCAAA  GCGTTTGCC AAGAC  AACAATGTGCAATACTT CCC  TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACT                                                                                                                                     ]
[+] EMBL AU070793             [                                                                                                                                                                                                                                                                                                                                            AATTTGGGGAAGTTCATCCCCTGGGGTGCTATACCGCTTGGCTGTCGCGGNAGGAGCTTTCCGG AGGAGTACCCAAAG GCGTTTGCC AAGAC  AACAATGTGCAATACTTCCCC  TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATT CCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAACGCAATGTGCGCTTCTTAGCTAGGAATACGTGCGCTTCTATGCGCATTCATATTACCTGCNNTTTTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU160955             [                                                                                                                                                                                                                                                                                                                                                       GTTCAT CCCT GGGTGCTATA CGC TGGCTGTCNCGG AGGAGC TTCCGG AGGAGTA CCAAA  GCGTTTGCC AAGAC  ANCAATGTGCAATACTT CCC  TCCGAAGNGTG TNTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTAAAAAAAAAAAAAAAAAAA                                                                                     ]




>consensus_12870#0
TNGGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGC
GGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTACGCGCAGATA
CCGACGAGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTAC
GATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCAC
GACAACGTCGTCAACTGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCT
GGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATTGGGAAGTTCATCCCTGGGTGCTATACG
CTGGCTGTCGCGGAGGAGCTTCCGGAGGAGTACCAAAGCGTTTGCCAAGACAACAATGTG
CAATACTTCCCTCCGAAGCGTGTCTGAACAAGCCATATATAGTCCCTTCAAGAGAACAGC
GTGCCTGAACAACCTATATTCCCTTCGGAGCGTCACGATCCTGAAGCAAATACTATGCAC
GTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGC
TTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAG
TGTTTCAATCTACTCTAACGCAAAAAAAAATTCTTAGCTAGGAATACGTGCGCTTCTATG
CGCATTCATATTACCTGCNNTTTTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA
clustalw multiple alignements is not computed in this case