These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 775 fasta sequence [TNGGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC-GCGCAGATACCGACG-AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC-TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT--GGGAAGTTCAT-CCCT-GGGTGCTATA-CGC-TGGCTGTCGCGG-AGGAGC-TTCCGG-AGGAGTA-CCAAA--GCGTTTGCC-AAGAC--AACAATGTGCAATACTT-CCC--TCCGAAGCGTG-TCTGAACAAGCCATAT-ATAGT-CCCTTC-AAGAG-AACAGCGTGCCTG-AAC-AACCT-ATATTCCCTTCGGAGCGTCACGATCCTG-AAGC-AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAACGCAAAAAAAAATTCTTAGCTAGGAATACGTGCGCTTCTATGCGCATTCATATTACCTGCNNTTTTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU160954 [TNGGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA ] [+] EMBL AU092002 [ GGAGAGAGAGGAAATTGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTC TCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCAT CCCT GGGTGCTATA NGC TGGCTGTCGCGG AGGAGCTTTCCGGAAGGAGTA CCAAAANGCGTTTGCCAAAGACCAAACAATGTGCAATACTT CCCCTTCCGAAGCGTGTTCTGAACAAGCCATATAATAGTNCCCTTCAAAGAGAAACAGCGTGCCTGAAACAAACCTAATATTCCCTTCGGAGCGTCACGATCCTGAAAGCAAAATACTAT ] [+] EMBL AU068840 [ AGAGGAAATNGGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCTTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA C ] [+] EMBL AU166054 [ gtccgaAGGAAATTGNAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGCCGCCGCCGNCGCCGGTGCCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA CCAAA GCGTTTGCC AAGAC AACAATGTGCAATACTT CCC TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAACGCAAAAAAAAA ] [+] EMBL C74301 [ GGAGAGGAGAGAGAGAGAGAGAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTC TCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTNGGC ] [+] EMBL C73792 [ AGAGGAGAGAGATANAGANAAGCTGGAGAGGATGAGGGGCGGCGGCGGCGGCGGTGGCGGCGACGGGATGATGGACGACGGGCCCAAGTAC GCGCAGATACCGACG AGCTTTGGCCACGAGCNCCGCGCGTNCCTGCGCTGCNGCCTCGTCAAGACCTACGATCAGTTCATGGAGCGAGGCTGCNAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAACTTGCACCACCCCCAACTTCACAGGAATTATCTCCGTGATNGATCCTGGTAAGAGTNGGG ] [+] EMBL AU094703 [ tgnCGACGGGCCCAAGTACGGCGCAGATACCGACGAAGCTTCGGCCACGAGCTCCGCGCGTGCCTCCGCTGCCGCCTCGTCAAGACCTACGATCAGTTCATGGAGCAAGGCTGCGAGAACTGCCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCACAGGAATAATCTCCGTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA CCAAA GCGTTTGCC AAGAC AACAATGTGCAATACTT CCC TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAA AAAAAA ] [+] EMBL AU068841 [ CCCCTTCCTCGACATGGAAAGGGATCACGACAACGTCGTCAAC TGCACCACCCCCAACTTCNCAGGAATAATCTCCNTGATGGATCCTGGTAGGAGTTGGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCNT CCCT GGGTGCTATN CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTN CCAAA GCGTTTGCC AAGAC AACAATGTGCAATACTT CCC TCCGAAGCGTG TCTGANCAAGCCATAT ATNGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATT CCTTCGGAGCGTCNCGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAaaaa ] [+] EMBL CF313060 [ GGGCTGCTCGTTGGTTGAGAATT GGGAAGTTCAT CCCT GGGTGCTATA CGC TGGCTGTCGCGG AGGAGC TTCCGG AGGAGTA CCAAA GCGTTTGCC AAGAC AACAATGTGCAATACTT CCC TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACT ] [+] EMBL AU070793 [ AATTTGGGGAAGTTCATCCCCTGGGGTGCTATACCGCTTGGCTGTCGCGGNAGGAGCTTTCCGG AGGAGTACCCAAAG GCGTTTGCC AAGAC AACAATGTGCAATACTTCCCC TCCGAAGCGTG TCTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATT CCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTACTCTAACGCAATGTGCGCTTCTTAGCTAGGAATACGTGCGCTTCTATGCGCATTCATATTACCTGCNNTTTTCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU160955 [ GTTCAT CCCT GGGTGCTATA CGC TGGCTGTCNCGG AGGAGC TTCCGG AGGAGTA CCAAA GCGTTTGCC AAGAC ANCAATGTGCAATACTT CCC TCCGAAGNGTG TNTGAACAAGCCATAT ATAGT CCCTTC AAGAG AACAGCGTGCCTG AAC AACCT ATATTCCCTTCGGAGCGTCACGATCCTG AAGC AAATACTATGCACGTGTTTTTATCTAGATACATTCCTTGCCAAGGGAACTGCTGTTACCTGTTGTGTCCATGCTTAGAGCAGCTAATCAGCAATTGACCGTGCACCTTCTGTACTTGAACAACTCAAGAGCAGTGTTTCAATCTAAAAAAAAAAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||