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Oryza sativa
cluster # 12878 cluster # 12878       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12878#0 length = 1261 sequences # 6  
consensus_12878#1 length = 837 sequences # 3  
consensus_12878#2 length = 618 sequences # 1  
consensus_12878#3 length = 511 sequences # 1  

consensusID : consensus_12878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1261
fasta sequence
                              [CTGCCATGGACTGAAGGAGTAGAAAATTTTTCCGCCGGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCGGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATAT-GGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATCACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAGCAGTACGTGATTTTAGTTCTCTCTTTGGATTCTATTCAATGCAGTCAAATCTAAAATCAT]

[+] EMBL CF329123             [CTGCCATGGACTGAAGGAGTAGAAAATTTTTCCGCCGGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCGGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCTGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTTAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATATGGGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK121988             [                        catcctgCCGCCGGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCGGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATAT GGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATCACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAGCAGTACGTGATTTTAGTTCTCTCTTTGGATTCTATTCAATGCAGTCAAATCTAAAATCAT]
[+] EMBL CF327332             [                                 GCCGGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCGGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATAT GGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATCACAAGTAAAACCAGCTCCTGCGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C28235               [                                    GGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAG GGAGGCTTCCGCCGCCGG GTACCGGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCATTTAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA998462             [                                                                                                                                                                                                                CCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATAT GGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATCACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BP184854             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATAT GGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATCACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATAT                                                                                                                                                                                            ]


>consensus_12878#0 CTGCCATGGACTGAAGGAGTAGAAAATTTTTCCGCCGGCGGCTACCGCGGGCGGTGCTCG ACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCGGATGG AGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCG TCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTA TGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCG CTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAG GCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTCAA CCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCAT CTGCACCAAATATGGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTCCA TTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATCAC AAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAA GTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCA AGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGT TGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAA TGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAG TGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAA GAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTT CTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGC AGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAA CACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACA GCAGTACGTGATTTTAGTTCTCTCTTTGGATTCTATTCAATGCAGTCAAATCTAAAATCA T



consensusID : consensus_12878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 837
fasta sequence
                              [ACCGTTGGGGACTTATGGTCTAAGTTCACTTCTAGGCTGAAGGTTCCCCCAACTTTNGTCATCTGCCCCAAATTATGGCTGGTTCTGTGCCTAGCATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTATGAAACATCACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCT-CCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTG-AT-CCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAGCAGTACGTGATTTTAGTTCTCAAAAAAAAAAAAAAACACTGTCATGCCGTTCGTAGC]

[+] EMBL C97579               [ACCGTTGGGGACTTATGGTCTAAGTTCACTTCTAGGCTGAAGGTTCCCCCAACTTTNGTCATCTGCCCCAAATTATGGCTGGTTCTGTGCCTAGCATGGACAAGCTCCCAATGGTGTGTCCATTGATCTAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTATGAAACATCACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCT CCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTG AT CCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAGCAGTACGTGATTTTAGTTCTCAAAAAAAAAAAA                        ]
[-] EMBL CF309155             [                                                                                                                                                                                                                 CAGCATGGAATGCAACCAGATATGACTGAAAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTCTTGGATTCTTCAGTAGCTAAATGGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTG AT CCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAGCAGTACGTGATTTTAGTTCTCAAAAAAAAAAAAAAACACTGTCATGCCGTTCGTAGC]
[-] EMBL AU077987             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gccncagAGTCTAAAAACAAGAAGATGATGAT GAATTGCAGGATTGCATTTGGNCTATTTTCGCAATCC TTGCAATTTCTT GATGCTTCAGTAGCTTAATAGTTCATC GATTAGCTTGCGACAT ATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGCATGCCAA                                                                                                          ]


>consensus_12878#1 ACCGTTGGGGACTTATGGTCTAAGTTCACTTCTAGGCTGAAGGTTCCCCCAACTTTNGTC ATCTGCCCCAAATTATGGCTGGTTCTGTGCCTAGCATGGACAAGCTCCCAATGGTGTGTC CATTGATCTAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTATGAAACATCAC AAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGAAA GTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCTGTTCCAGGATGAAACCAA GATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTT GCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAAT GCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGT GAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAG AAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTC TTGGATTCTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCA GAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAAC ACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCACAG CAGTACGTGATTTTAGTTCTCAAAAAAAAAAAAAAACACTGTCATGCCGTTCGTAGC



consensusID : consensus_12878#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence
                              [GCAATAAGCCCAAGACCCAACGGCGGGCTGACGGCTCACAATTCCCATCCTGCCGCCGGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCTGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCGTTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATATGGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGGTGTGTCCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAAC]

[+] EMBL CF309154             [GCAATAAGCCCAAGACCCAACGGCGGGCTGACGGCTCACAATTCCCATCCTGCCGCCGGCGGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCTGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCGTTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACCAAATATGGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGGTGTGTCCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAAC]


>consensus_12878#2 GCAATAAGCCCAAGACCCAACGGCGGGCTGACGGCTCACAATTCCCATCCTGCCGCCGGC GGCTACCGCGGGCGGTGCTCGACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTC CGCCGCCGGCGTACCTGATGGAGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCG GCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCA TACCGGGGCTTAATCAAGTTATGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCG TAACAAGGCATGTTAATTCCGCTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCA TTGGCTGTGGAGTTGGTATAGGCCACGGTTTTGGAATAGGAATTGCGTTGAAGCCACAAG TAATTCATGGAATTCAGTCAACCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGA AGGATACCCCAACTTTGTCATCTGCACCAAATATGGCTGGTTCTGTGCCTAGCAATGGAC AAGCTCCCAATGGGTGTGTCCCATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCA CCATACAAGTAATGAAAC



consensusID : consensus_12878#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence
                              [AGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTTTTGGATTTTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCCCAGCAGTAAAAAAAAAAAAAA]

[-] EMBL CF329122             [AGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACAAGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAAGTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAATCCTTTGCAATTTTTTGGATTTTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACATAATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACTGATAGCATCCCAGCAGTAAAAAAAAAAAAAA]


>consensus_12878#3 AGGATGAAACCAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATG TGCTGGAATTGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGGGACGAGAACGACA AGCTCCGTCAAATGCTCATAGAAGAACTCAAGGTTTCACCTTCCAAGTTACAATTAGATC ATAAAAATGGAGTGAAGGCCTACAACCCATGCTCGGACTGCTTTGATTGCCGGAGGCGAA GTCGAAAAACAAGAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTATTTTCGCAAT CCTTTGCAATTTTTTGGATTTTTCAGTAGCTAAATAGTTCATCGGATTAGCTTTCGACAT AATATCCTCAGCAGAAGATCCACTCTTGTTGTTCAGGCCAGTTATGTTACCTATCTCCTG AACATTCGTGAACACTTGATCCAATTGATGCGTTACTTCTGTGCTGAACATGCGCAGACT GATAGCATCCCAGCAGTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12878#1      ------------------------------------------------------------
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      CTGCCATGGACTGAAGGAGTAGAAAATTTTTCCGCCGGCGGCTACCGCGGGCGGTGCTCG 60
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      ------------------------------------------------------------
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      ACTCGACCTCGATGGCGAGCTCGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCGGATGG 120
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      ------------------------------------------------------------
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      AGAACCCCTTCAGCGTGAAGGTGCTCCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCG 180
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      ------------------------------------------------------------
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      TCGGCATCGGCGTCGGCCGCCCCATCTACCTAGGTGTCATACCGGGGCTTAATCAAGTTA 240
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      ------------------------------------------------------------
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      TGACCGCAACAAGGGGCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCG 300
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      ------------------------------------------------------------
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      CTCTAAGGAAGTCAGGGTTAAAGAACATTGAAGCAGGCATTGGCTGTGGAGTTGGTATAG 360
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      -----------------------------------------------------------A 1
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      GCCACGGTTTTGGAATAGGAATTGCATTGAAGCCACAAGTAATTCATGGAATTCAGTCAA 420
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      CCGTTGGGGACTTATGGTCTAAGTTCACTTCTAGGCTGAAGGTTCCCCCAACTTTNGTCA 61
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      CCGTTGGAGAACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTG-TCA 479
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      TCTGCCCCAAATTATGGCTGGTTCTGTGCCTAGCA-TGGACAAGCTCCCAATGGTGTGTC 120
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      TCTGCACCAAAT-ATGGCTGGTTCTGTGCCTAGCAATGGACAAGCTCCCAATGGTGTGTC 538
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      CATTGATCTAA-GGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTA-TGAAACATC 178
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      CATTGATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATACAAGTAATGAAACATC 598
consensus_12878#2      ------------------------------------------------------------
                                                                                   

consensus_12878#1      ACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGA 238
consensus_12878#3      ------------------------------------------------------------
consensus_12878#0      ACAAGTAAAACCAGCTCCTGGGTTGCAAAGCCAGCATGGAATGCAACCAGATATGACTGA 658
consensus_12878#2      ---------------GCAATAAGCCCAAGACCCAACGGCGGGCTGACGGCTCACAATTCC 45
                                                                                   

consensus_12878#1      AAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCC-TGTTCCAGGATGAAAC 297
consensus_12878#3      --------------------------------------------------AGGATGAAAC 10
consensus_12878#0      AAGTCGGACTGAAAAGGTTGTTGCCAACTTTCTACAGTCTCCCCTGTTCCAGGATGAAAC 718
consensus_12878#2      CATCCTGCCGCCGGCGGCTACCGCGGGCGGTGCTCGACTCGAC---CTCGATGGCGAGCT 102
                                                                         * *  **   

consensus_12878#1      CAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGC-TGGAAT 356
consensus_12878#3      CAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGC-TGGAAT 69
consensus_12878#0      CAAGATGGACATCAGAGATGTGGCTAGAAATTCACATGGGATGGATAATGTGC-TGGAAT 777
consensus_12878#2      CGCGGGAGCGGAGGCTTCCGCCGCCGGCGTACCTGATGGAGAACCCCTTCAGCGTGAAGG 162
                       *  *   *           *  **  *     *  ****         *  ** ** *  

consensus_12878#1      TGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGG-GACGAGAACGACAAGCTCCGT 415
consensus_12878#3      TGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGG-GACGAGAACGACAAGCTCCGT 128
consensus_12878#0      TGTTGCTGAAGCACCAAAGAATTATTGACGAACTGCGG-GACGAGAACGACAAGCTCCGT 836
consensus_12878#2      TGCT-CCAGGTCTTCACCGGCTTCGGCGTCGGCTGCGGCGTCGGCATCGGCGTCGGCCGC 221
                       ** * *     *  **  *  **         ****** * **  * ** *     *** 

consensus_12878#1      CAAATGCTCATAGAAG--AACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAA 473
consensus_12878#3      CAAATGCTCATAGAAG--AACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAA 186
consensus_12878#0      CAAATGCTCATAGAAG--AACTCAAGGTTTCACCTTCCAAGTTACAATTAGATCATAAAA 894
consensus_12878#2      CCCATCTACCTAGGTGTCATACCGGGGCTTAA----TCAAGTTATGACCGCAACA-AGGG 276
                       *  **   * ***  *  *   *  ** ** *     *******  *    * ** *   

consensus_12878#1      ATGGAGTGAAGGCCT-----------ACAACCCATGCTCGGACTGCTTTGATTGCCGGAG 522
consensus_12878#3      ATGGAGTGAAGGCCT-----------ACAACCCATGCTCGGACTGCTTTGATTGCCGGAG 235
consensus_12878#0      ATGGAGTGAAGGCCT-----------ACAACCCATGCTCGGACTGCTTTGATTGCCGGAG 943
consensus_12878#2      GCGCAACGGATGCCTTTTCAGGCGTAACAAGGCATGTTAATTCCGCTCTAAG----GAAG 332
                         * *  * * ****           ****  **** *    * *** * *     * **

consensus_12878#1      GCGAAGTCGAAAAACAA-GAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTAT--T 579
consensus_12878#3      GCGAAGTCGAAAAACAA-GAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTAT--T 292
consensus_12878#0      GCGAAGTCGAAAAACAA-GAAGATGATAATGGAATTGCAGGATTGCATTTTGGCTAT--T 1000
consensus_12878#2      TCAGGGTTAAAGAACATTGAAGCAGGCATTGG--CTGTGGAGTTG-GTATAGGCCACGGT 389
                        *   **  ** ****  ****  *  * ***   **  *  ***  * * *** *   *

consensus_12878#1      TTCGCAATCCT--TTGCAATT---TCTTGGATTCTTCA-GTAGCTAAATAGTTCATCGGA 633
consensus_12878#3      TTCGCAATCCT--TTGCAATT---TTTTGGATTTTTCA-GTAGCTAAATAGTTCATCGGA 346
consensus_12878#0      TTCGCAATCCT--TTGCAATT---TCTTGGATTCTTCA-GTAGCTAAATAGTTCATCGGA 1054
consensus_12878#2      TTTGGAATAGGAATTGCGTTGAAGCCACAAGTAATTCATGGAATTCAGTCAACCGTTGGA 449
                       ** * ***     ****  *           *  **** * *  * * *    * * ***

consensus_12878#1      TTAGCTTTCGACATAATA---TCCTCAGCAGAAGA----TCCACTCTTGTTGTTCAGGCC 686
consensus_12878#3      TTAGCTTTCGACATAATA---TCCTCAGCAGAAGA----TCCACTCTTGTTGTTCAGGCC 399
consensus_12878#0      TTAGCTTTCGACATAATA---TCCTCAGCAGAAGA----TCCACTCTTGTTGTTCAGGCC 1107
consensus_12878#2      G-AACTTATGTCTAAGTTCACTTCTAGGCTGAAGGATACCCCAACTTTGTCATCTGCACC 508
                         * ***  * *  * *    * **  ** ****      ***   ****  *     **

consensus_12878#1      AGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTC 746
consensus_12878#3      AGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTC 459
consensus_12878#0      AGTTATGTTACCTATCTCCTGAACATTCGTGAACACTTGATCCAATTGATGCGTTACTTC 1167
consensus_12878#2      AAATATG--GCTGGTTCTGTGCCTAGCAATGGACAAGCT-CCCAATGGGTGTGTCCCATT 565
                       *  ****   *   *    **   *    ** ***      ***** * ** **  * * 

consensus_12878#1      TGTGCTGAACATGCGCAGACTGATAGCA-TCACAGCAGTACGTGATTTTAGTTCTCAAAA 805
consensus_12878#3      TGTGCTGAACATGCGCAGACTGATAGCA-TCCCAGCAGTA----------------AAAA 502
consensus_12878#0      TGTGCTGAACATGCGCAGACTGATAGCA-TCACAGCAGTACGTGATTTTAGTTCTCTCTT 1226
consensus_12878#2      GATCTAAAGGCTAAGACCACGAAAAGTAATTTCCACCATA---------------CAAGT 610
                         *    *   *  *   **  * ** * *  *  *  **                    

consensus_12878#1      AAAAAAAAAAACACTGTCATGCCGTTCGTAGC--- 837
consensus_12878#3      AAAAAAAAA-------------------------- 511
consensus_12878#0      TGGATTCTATTCAATGCAGTCAAATCTAAAATCAT 1261
consensus_12878#2      AATGAAAC--------------------------- 618
                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)