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Oryza sativa
cluster # 12881 cluster # 12881       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12881#0 length = 984 sequences # 4  
consensus_12881#1 length = 975 sequences # 6  
consensus_12881#2 length = 693 sequences # 1  

consensusID : consensus_12881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 984
fasta sequence
                              [GCGACCAGAAATCAGTTAATACTCGGTTTGAGATGGCGATGAGGCGATGAGATCATTGCCTTTTCGGTCGAATCTAGCAGNGCGGCGAGCAACCCCCACCCACTTTGACTCCGATCCTCCCCGCCCCCAGCGCGATA-CCCATCCGATCCCAAATTCCGGCGAGATGGCGGTCAG-CTGTGGCGCGCGGTGATGGGNGCGGCCGGCGGCGGCGGCTCCTCGTCGTCGTCCGCGGCCGGCGGCGACGCGGGGGGCGGCGTGGAGTTCTGGCACGGCGGGGAGCGCACGGGGTGGCTGAACAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGCGGCTGTTCTGGTTCAAGGACGCCGCCGTGACGCGCGGCTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCGCCGTCAAGGGCGCCGAGGACGTCATCAACCGCCAGTTCGCCTTCGAGCTCTCCACCCCGACCGACACCATGTACTTCATCGCCGACTCCGAGAAAGAGAAGGAAGAGTGGATCAATTCCATCGGCCGATCCATTGTTCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACGACAGCCGCCCCAACTCCAAGCCCCCACCGCAGCCGAAGACGAGCGAAGAGAGTGAACCGTCAGCGTAAGATAGCGGTGATCTCTGGCTCTCAATATGCATATCTATTGTATGATTTTATCTACTCAAGTAGTAGTAATTGTGAATTTTTAGTTTTTGTTTTCTTCTCTTGGTTAATTATATGTATATTATTGACTGCTACCTGAGAATAAGTTCAAGGTTTTGCCGTGTGGCTAGTTCTTTTACATTATGGATTAGTTGCAACAGCATAATTCGGTTGGTGTTTACTTGTTTCATCCTGTATGAAGTTACTGGCTTGGATCATCGGTGCTGCGAAAAATTTTAAGCACTCAGTTCTTTAAAAAAAAAAAAA]

[+] EMBL OSS4966A             [GCGACCAGAAATCAGTTAATACTCGGTTTGAGATGGCGATGAGGCGATGAGATCATTGCCTTTTCGGTCGAATCTAGCAGNGCGGCGAGCAACCCCCACCCACTTTGACTCCGATCCTCCCCGCCCCCAGCGCGATA CCCATCCGATCCCAAATTCCGGCGAGATGGCGGTCAG CTGTGGCGCGCGGTGATGGGNGCGGCCGGCGGCGGCGGCTCCTNGTCGTCGTCCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK108280             [                                                               TCGGTCGAATCTAGCAGAGCGGCGAGCAACCCCCACCCACTTTGACTCCGATCCTCCCCGCCCCCAGCGCGATAGCCCATCCGATCCCAAATTCCGGCGAGATGGCGGTCAGCCTGTGGCGCGCGGTGATGGGCGCGGCCGGCGGCGGCGGCTCCTCGTCGTCGTCCGCGGCCGGCGGCGACGCGGGGGGCGGCGTGGAGTTCTGGCACGGCGGGGAGCGCACGGGGTGGCTGAACAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGCGGCTGTTCTGGTTCAAGGACGCCGCCGTGACGCGCGGCTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCGCCGTCAAGGGCGCCGAGGACGTCATCAACCGCCAGTTCGCCTTCGAGCTCTCCACCCCGACCGACACCATGTACTTCATCGCCGACTCCGAGAAAGAGAAGGAAGAGTGGATCAATTCCATCGGCCGATCCATTGTTCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACGACAGCCGCCCCAACTCCAAGCCCCCACCGCAGCCGAAGACGAGCGAAGAGAGTGAACCGTCAGCGTAAGATAGCGGTGATCTCTGGCTCTCAATATGCATATCTATTGTATGATTTTATCTACTCAAGTAGTAGTAATTGTGAATTTTTAGTTTTTGTTTTCTTCTCTTGGTTAATTATATGTATATTATTGACTGCTACCTGAGAATAAGTTCAAGGTTTTGCCGTGTGGC                                                                                                                                           ]
[+] EMBL C22651               [                                                                                       AGCAACCCCCNCCCACTTTGACTCCGATCCTCCCCGCCCCCAGCGCGATA NCCATCCGATCCCAAATTCCGGCGAGATGGCGGTCAG CTGTGGCGCGCGGTGATGGGNGCGGCCGGCGGCGGCGGCTCCTCGTCGTCGTCCGCGGCCGGCGGCGACGCGGGGGGCGGCGTGGAGTTCTGGCACGGCGGGGAGCGCACGGGGTGGCTGAACAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGCGGCTGTTCTGGTTCAAGGACGCCGCCGTGACGCGCGGNTCGGTGCCCCGCGGCGTCATCCCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C22652               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TANGATAGCGGTGATCTCTGGCTCTCAATATGCATATCTATTGTANGATTTTATCTACTCAAGTAGTAGTAATTGTGAATTTTTAGTTTTTGTTTTCTTCTCTTGGTTAATTATATGTATATTATTGACTGCTACCTGAGAATAAGTTCAAGGTTTTGCCGTGTGGCTAGTTCTTTTACATTATGGATTAGTTGCAACAGCATAATTCGGTTGGTGTTTACTTGTTTCATCCTGTATGAAGTTACTGGCTTGGATCATCGGTGCTGCGAAAAATTTTAAGCACTCAGTTCTTTAAAAAAAAAAAAA]


>consensus_12881#0 GCGACCAGAAATCAGTTAATACTCGGTTTGAGATGGCGATGAGGCGATGAGATCATTGCC TTTTCGGTCGAATCTAGCAGNGCGGCGAGCAACCCCCACCCACTTTGACTCCGATCCTCC CCGCCCCCAGCGCGATACCCATCCGATCCCAAATTCCGGCGAGATGGCGGTCAGCTGTGG CGCGCGGTGATGGGNGCGGCCGGCGGCGGCGGCTCCTCGTCGTCGTCCGCGGCCGGCGGC GACGCGGGGGGCGGCGTGGAGTTCTGGCACGGCGGGGAGCGCACGGGGTGGCTGAACAAG CAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGCGGCTG TTCTGGTTCAAGGACGCCGCCGTGACGCGCGGCTCGGTGCCCCGCGGCGTCATCCCCGTC GCCACCTGCCTCGCCGTCAAGGGCGCCGAGGACGTCATCAACCGCCAGTTCGCCTTCGAG CTCTCCACCCCGACCGACACCATGTACTTCATCGCCGACTCCGAGAAAGAGAAGGAAGAG TGGATCAATTCCATCGGCCGATCCATTGTTCAGCACTCCCGCTCCGTCACCGACGCCGAG GTCGTCGACTACGACAGCCGCCCCAACTCCAAGCCCCCACCGCAGCCGAAGACGAGCGAA GAGAGTGAACCGTCAGCGTAAGATAGCGGTGATCTCTGGCTCTCAATATGCATATCTATT GTATGATTTTATCTACTCAAGTAGTAGTAATTGTGAATTTTTAGTTTTTGTTTTCTTCTC TTGGTTAATTATATGTATATTATTGACTGCTACCTGAGAATAAGTTCAAGGTTTTGCCGT GTGGCTAGTTCTTTTACATTATGGATTAGTTGCAACAGCATAATTCGGTTGGTGTTTACT TGTTTCATCCTGTATGAAGTTACTGGCTTGGATCATCGGTGCTGCGAAAAATTTTAAGCA CTCAGTTCTTTAAAAAAAAAAAAA



consensusID : consensus_12881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 975
fasta sequence
                              [ATCGATTCCCATCTAGGCATCTCTTCCCAGAGAGAAGAAAAAGAACTCTCCCGCAGCCGATCCCCAAATCCCCACGCATCTCATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGGCGCCTCGTCGGCGGACACCGACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACGCGCGCGTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGCCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGA-GTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGTTTAGTTGTCTAAATTCTTAGATCAAGTGTGTTGGTGAAACCGTAGCAAATCTTTCAAGGTTAGTCCTGACTAACTCTGCACTCTTGCCCGTAAATAGCCAACTGGCTTTGATCTATGGAATTATAATTC-ATTGTATATCTTTAAAAAAAAAA]

[+] EMBL AK072489             [ATCGATTCCCATCTAGGCATCTCTTCCCAGAGAGAAGAAAAAGAACTCTCCCGCAGCCGATCCCCAAATCCCCACGCATCTCATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGGCGCCTCGTCGGCGGACACCGACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACGCGCGCGTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCACCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGA GTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGTTTAGTTGTCTAAATTCTTAGATCAAGTGTGTTGGTGAAACCGTAGCAAATCTTTCAAGGTTAGTCCTGACTAACTCTGCACTCTTGCCCGTAAATAGCCAACTGGCTTTGATCTATGGAATTATA                            ]
[+] EMBL CA754622             [                                    GAAAAAGAACTCTCCCGCAGCCGATCCCCAAATCCCCACGCATCTCATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGGCGCCTCGTCGGCGGACACCGACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACGCGCGCGTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCNTCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACNACGGCGGCCGTCCTGCCGCCTCAGTCACCGCAGACGGCGACNAGTGATCGATTTCATCGATTGATTGGTGAGC AAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCTTGGTACTTACTTAGGTTTTGC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB097047             [                                                                                                                                                                                                                      AAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTT AAGGACTCGGGCGTCACGCGCGCGTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGCCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGA GTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGAT                                                                                                                                                                                ]
[+] EMBL BQ909114             [                                                                                                                                                                                                                       AGACGTGGCGGCGCCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACGCGCGCGTCGGTGCCCCGCGGCGTCATCCCCGTCGCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGCCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGC AAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGNCATCAATTTGGGANCTTTAGTGTAaaaaaaaa                                                                                                                                                                                                                                       ]
[+] EMBL BI804495             [                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATC GCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGCCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGA GTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGTTTAGTTGTCTAAATTCTTAGATCAAGTGTGTTGGTGAAACCGTAGCAAATCTTTCAAGGTTAGTCCTGACTAACTCTGCACTCTTGCCCGTAAATAGCC ACTGGCTTTGATCTATGGAATTATAATTC ATTGTATATCTTTAAAAAAAAAA]
[+] EMBL CB096900             [                                                                                                                                                                                                                                                                                                                                                                                                                               ggacgaGACAAGGGGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGCCGCAGACGGCGACAAGTGATCGATTTTATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGA GTTTAGTGTATAGGATGCGCTCTGAAACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGTTTAGTTGTCTAAATTCTTAGATCAAGTGTGTTGGTGAAACCGTAGCAAATCTTTCAAGGTTAGTCCTGACTAACTCTGCACTCTTGCCCGTAAATAGCCAACTGGCTTTGATCTATGGAATTATAATTCAATTGTATATCTTTAt        ]


>consensus_12881#1 ATCGATTCCCATCTAGGCATCTCTTCCCAGAGAGAAGAAAAAGAACTCTCCCGCAGCCGA TCCCCAAATCCCCACGCATCTCATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGG CGCCTCGTCGGCGGACACCGACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCG CGCGGGGTGGCTGACCAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGT GCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACGCGCGCGTCGGTGCC CCGCGGCGTCATCCCCGTCGCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAA CCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTC CGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCG CTCCGTCACCGACGCCGAGATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGC CGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGT TCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGT TTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAA TTTGGGAGTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAAC TTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGTTTAGTTGTCTAAATTCT TAGATCAAGTGTGTTGGTGAAACCGTAGCAAATCTTTCAAGGTTAGTCCTGACTAACTCT GCACTCTTGCCCGTAAATAGCCAACTGGCTTTGATCTATGGAATTATAATTCATTGTATA TCTTTAAAAAAAAAA



consensusID : consensus_12881#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [ATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGGCGCCTCGTCGGCGGACACCGACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCACCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGAGTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGT]

[+] EMBL AK063895             [ATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGGCGCCTCGTCGGCGGACACCGACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAGCAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTCTGGTTCAAGGACTCGGGCGTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAGGTCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCACCGCAGACGGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGAGTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGT]


>consensus_12881#2 ATGGCGGCGAGCCTGTGGCGGGCGGTGATGGGCGCCGGCGCCTCGTCGGCGGACACCGAC ACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAGCAG GGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTCTTC TGGTTCAAGGACTCGGGCGTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTC GCCTTCGAGCTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAG AAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACC GACGCCGAGGTCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCACCGCAGACGGC GACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATA CTGCAGCATATCCATGGTACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTT GCGAACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGAGTT TAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAAT AAGGTACGATTTGTTTGGTCAATTGGTCTGTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12881#1      ------------------------------------------------------------
consensus_12881#2      ------------------------------------------------------------
consensus_12881#0      GCGACCAGAAATCAGTTAATACTCGGTTTGAGATGGCGATGAGGCGATGAGATCATTGCC 60
                                                                                   

consensus_12881#1      -------------ATCGATTCCCATCTAGGCATCTCTTCCCAGAGAGAAGAAAAAGAACT 47
consensus_12881#2      ------------------------------------------------------------
consensus_12881#0      TTTTCGGTCGAATCTAGCAGNGCGGCGAGCAACCCCCACCCACTTTGACTCCGATCCTCC 120
                                                                                   

consensus_12881#1      CT-CCCGCAGC-CGATCCCCA---AATCCCCACGCATCTCATGGCGGCGAGC--CTGTGG 100
consensus_12881#2      ----------------------------------------ATGGCGGCGAGC--CTGTGG 18
consensus_12881#0      CCGCCCCCAGCGCGATACCCATCCGATCCCAAATTCCGGCGAGATGGCGGTCAGCTGTGG 180
                                                                 *  ****  *  ******

consensus_12881#1      CGGGCGGTGATGGGCGC------------CGGCGCCTCGTCGGCG---------GACACC 139
consensus_12881#2      CGGGCGGTGATGGGCGC------------CGGCGCCTCGTCGGCG---------GACACC 57
consensus_12881#0      CGCGCGGTGATGGGNGCGGCCGGCGGCGGCGGCTCCTCGTCGTCGTCCGCGGCCGGCGGC 240
                       ** *********** **            **** ******** **         * *  *

consensus_12881#1      GACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAG 199
consensus_12881#2      GACACCACGGGCGGGGTGGAGTTCTGGCGTTCGCCGGAGCGCGCGGGGTGGCTGACCAAG 117
consensus_12881#0      GACGCGGGGGGCGGCGTGGAGTTCTGGCACGGCGGGGAGCGCACGGGGTGGCTGAACAAG 300
                       *** *   ****** *************       ******* ************ ****

consensus_12881#1      CAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTC 259
consensus_12881#2      CAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAAGGGAGGCTC 177
consensus_12881#0      CAGGGGGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGCGGCTG 360
                       ************************************************** *** **** 

consensus_12881#1      TTCTGGTTCAAGGACTCGGGCGTCACGCGCGCGTCGGTGCCCCGCGGCGTCATCCCCGTC 319
consensus_12881#2      TTCTGGTTCAAGGACTCGGGCGTCAC---------------------------------- 203
consensus_12881#0      TTCTGGTTCAAGGACGCCGCCGTGACGCGCGGCTCGGTGCCCCGCGGCGTCATCCCCGTC 420
                       *************** * * *** **                                  

consensus_12881#1      GCCACCTGCCTCACCGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAG 379
consensus_12881#2      --------------CGTCAAGGGCGCCGAGGACACGCTCAACCGGCAGTTCGCCTTCGAG 249
consensus_12881#0      GCCACCTGCCTCGCCGTCAAGGGCGCCGAGGACGTCATCAACCGCCAGTTCGCCTTCGAG 480
                                     *******************    ******* ***************

consensus_12881#1      CTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAG 439
consensus_12881#2      CTCTCCACCCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAG 309
consensus_12881#0      CTCTCCACCCCGACCGACACCATGTACTTCATCGCCGACTCCGAGAAAGAGAAGGAAGAG 540
                       ************ * ** ***************************** ******** ***

consensus_12881#1      TGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAG 499
consensus_12881#2      TGGATCAACTCCATCGGCCGCTCCATCGTCCAGCACTCCCGCTCCGTCACCGACGCCGAG 369
consensus_12881#0      TGGATCAATTCCATCGGCCGATCCATTGTTCAGCACTCCCGCTCCGTCACCGACGCCGAG 600
                       ******** *********** ***** ** ******************************

consensus_12881#1      ATCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCGCCGCAGACGGCGACAAGTGA 559
consensus_12881#2      GTCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCACCGCAGACGGCGACAAGTGA 429
consensus_12881#0      GTCGTCGACTACGACAGCCGCCCCAACTCCAAGCCC-CCACCGCAGCCGAAGACGAGCGA 659
                        ***************** ***      **    *   * ****** **  *** ** **

consensus_12881#1      TCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATAC---TGCAG 616
consensus_12881#2      TCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATAC---TGCAG 486
consensus_12881#0      AGAGAGTGAACCGTCAGCGTAAGATAGCGGTGATCTCTGGCTCTCAATATGCATATCTAT 719
                             * * *  *        **       ** ** *** **     ** *   *  * 

consensus_12881#1      CATATCCATGGTACTTACTTAGGTTTT-GCGATTATGG-TTCATGTTTCTTGATTTGCGA 674
consensus_12881#2      CATATCCATGGTACTTACTTAGGTTTT-GCGATTATGG-TTCATGTTTCTTGATTTGCGA 544
consensus_12881#0      TGTATG-ATTTTATCTACTCAAGTAGTAGTAATTGTGAATTTTTAGTTTTTGTTTTCTTC 778
                         ***  **  **  **** * **  * *  *** **  **  *  ** *** ***    

consensus_12881#1      ACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGAGTTTAGT 734
consensus_12881#2      ACGTAAGTGTGCATTTGTATATTACTGATGCTTATCGGGGAATAAATTTGGGAGTTTAGT 604
consensus_12881#0      TCTTGGTTAATTATATGTATATTATTGACTGCTACCTGAGAATAAGTTCAAGGTTTTGCC 838
                        * *   *    ** ********* ***    ** * * ****** **   *  ***   

consensus_12881#1      GTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGG 794
consensus_12881#2      GTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTTAATAAGG 664
consensus_12881#0      GTGTGGCTAGTTCTTTTACATTATGGATTAGTTGCAACAGCATAATTCGGTT------GG 892
                       ** * *   *  ** * * * ***  *  ****    *    *** *   **      **

consensus_12881#1      TACGATTTGTTTGGTCAATTGGTCTGTGTTTAGTTGTCTAAATTCTTAGATCAAGTGTGT 854
consensus_12881#2      TACGATTTGTTTGGTCAATTGGTCTGTGT------------------------------- 693
consensus_12881#0      TG---TTTACTTGTTTCATC---CTGTATGAAGTTACTGG----CTTGGATCATCGGTGC 942
                       *    ***  *** *  **    **** *                               

consensus_12881#1      TGGTGAAACCGTAGCAAATCTTTCAAGGTTAGTCCTGACTAACTCTGCACTCTTGCCCGT 914
consensus_12881#2      ------------------------------------------------------------
consensus_12881#0      TGCGAAAAATTTTAAGCACTCAGTTCTTTAAAAAAAAAAAAA------------------ 984
                                                                                   

consensus_12881#1      AAATAGCCAACTGGCTTTGATCTATGGAATTATAATTCATTGTATATCTTTAAAAAAAAA 974
consensus_12881#2      ------------------------------------------------------------
consensus_12881#0      ------------------------------------------------------------
                                                                                   

consensus_12881#1      A 975
consensus_12881#2      -
consensus_12881#0      -
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)