These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1946 fasta sequence [CCTTTGCGCCGCCCGCGTCCGACGCGCGGCGGCGGCGGAGATGTTGCGGCGGATGCGATGGATGGCGGACGGGGACGGGCGGTGGGAGCTGGACGTGGAGACGCCGGCGACGATGGAGGGCGCGGCGCGCCCCGTCCCCGGCGACCCGCTGCCGCTCGGCCTCTCGCGGGGGCCCCGGGTCACCCGCACGAAGCAGCTCGACTTCCTCCACCGCTTCATGGCCTCGCCGCTCGTCCCCTCCTTCTCCGCCTCCGGCGCCGGCCTCTCCGTCCACCACGCCCACCTCGTCCACCTCGCCCACAACTTGTCTTTTACTATCTTGGAGCAACTTCATGTACAGAAGCTTGTAGCTGTTGTGAAAGAGAAGTTATCAAATCGGCAAGAGGTCTCCTGGTCCAATGATATCAAAAGGCACCTGCATGATGTTATGTCTCTAGGTGTTGGCACAGAACTCTTGATTACACCAGATACCACTTTGCTACTGGAGCTGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAG-CTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGGGGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACCTGGCTTCAGTTGGCTCCGAGTCTGGATTGAGTTATCATGTACTATTGCAGCAGAATAGTGGAGAACCAAAATGTTTTGGTGGTGGTGAAGAAACCAGTGATGTTCCTGTTGCTCTGTTACCAGGGTTATGTGCTAAGGCAGCTGTTTCGATTAAGAAAAGCATTGATGTTTGGAGGAAAAAAGAAGATAAGCTAAAAAATGTCCAGCCGTATGATGTATTTCTCTCAGAACCTCATGTTTCGTTCACCGGGATCATTGGTGCAGTAGCCAGTGGTTCTTTTGGGGATTGCTCAAAAAGAATGTCCATGCAAAATGAAATACTAAAATCCAATGCCTTTAAATATTTTGATGAGAGGAACAAGTTTGCTGCCTTTGCAGACCTCTTTGCGTCTGTTAATTTTACAGCTCAACACGGGAATTTTCAGAGGCTTCTCCTGGATTTGACAAGGGTAAGCGCCCGGTTAGATATATCCTCAGGATCATTGTTCTTACGTGGTGCTTCTCAGCTTGCACAAGATTTCTTCTTCTCTCGACGCCCTGATTTAGAGACATTCTGTGATGTTTGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATCGACTGGGCTCTGAAGGTCCTGGGTTCCGCAAAGGCCACTGCTTGGTATTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGCAATAAGTCAATACGTGTCGACGACAATATATTTCTAGTTGTGTTTCATACTTGCTTTGGGCATCAGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATGCCGTCTGTTATATATTCATCCACTGATTGCTCGGTCAGGCCTGAAGAGTAGTTGATCTATCTTACAAGTTGAATTGTTGATGCGAATCACATCTGATAAATGAAATCTTCTCAG] [+] EMBL AK100105 [CCTTTGCGCCGCCCGCGTCCGACGCGCGGCGGCGGCGGAGATGTTGCGGCGGATGCGATGGATGGCGGACGGGGACGGGCGGTGGGAGCTGGACGTGGAGACGCCGGCGACGATGGAGGGCGCGGCGCGCCCCGTCCCCGGCGACCCGCTGCCGCTCGGCCTCTCGCGGGGGCCCCGGGTCACCCGCACGAAGCAGCTCGACTTCCTCCACCGCTTCATGGCCTCGCCGCTCGTCCCCTCCTTCTCCGCCTCCGGCGCCGGCCTCTCCGTCCACCACGCCCACCTCGTCCACCTCGCCCACAACTTGTCTTTTACTATCTTGGAGCAACTTCATGTACAGAAGCTTGTAGCTGTTGTGAAAGAGAAGTTATCAAATCGGCAAGAGGTCTCCTGGTCCAATGATATCAAAAGGCACCTGCATGATGTTATGTCTCTAGGTGTTGGCACAGAACTCTTGATTACACCAGATACCACTTTGCTACTGGAGCTGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAG CTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGGGGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACCTGGCTTCAGTTGGCTCCGAGTCTGGATTGAGTTATCATGTACTATTGCAGCAGAATAGTGGAGAACCAAAATGTTTTGGTGGTGGTGAAGAAACCAGTGATGTTCCTGTTGCTCTGTTACCAGGGTTATGTGCTAAGGCAGCTGTTTCGATTAAGAAAAGCATTGATGTTTGGAGGAAAAAAGAAGATAAGCTAAAAAATGTCCAGCCGTATGATGTATTTCTCTCAGAACCTCATGTTTCGTTCACCGGGATCATTGGTGCAGTAGCCAGTGGTTCTTTTGGGGATTGCTCAAAAAGAATGTCCATGCAAAATGAAATACTAAAATCCAATGCCTTTAAATATTTTGATGAGAGGAACAAGTTTGCTGCCTTTGCAGACCTCTTTGCGTCTGTTAATTTTACAGCTCAACACGGGAATTTTCAGAGGCTTCTCCTGGATTTGACAAGGGTAAGCGCCCGGTTAGATATATCCTCAGGATCATTGTTCTTACGTGGTGCTTCTCAGCTTGCACAAGATTTCTTCTTCTCTCGACGCCCTGATTTAGAGACATTCTGTGATGTTTGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATCGACTGGGCTCTGAAGGTCCTGGGTTCCGCAAAGGCCACTGCTTGGTATTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGCAATAAGTCAATACGTGTCGACGACAATATATTTCTAGTTGTGTTTCATACTTGCTTTGGGCATCAGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATGCCGTCTGTTATATATTCATCCACTGATTGCTCGGTCAGGCCTGAAGAGTAGTTGATCTATCTTACAAGTTGAATTGTTGATGCGAATCACATCTGATAAATGAAATCTTCTCAG] [+] EMBL CF312139 [ AAGCCTTCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGGGGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACCTGGCTTCAGTTGGCTCCGAGTCTGGATTGAGTTATCATGTACTATTGCAGCAGAATAGTGGAGAACCAAAATGTTTTGGTGGTGGTGAAGAAACCAGTGATGTTCCTGTTGCTCTGTTACCAGGGTTATGTGCTAAGGCAGCTGTTTCGATTAAGAAAAGCATTGATGTTTGGAGGAAAAAAGAAGATAAGCTAAAAAATGTCCAGCCGTATGATGTATTTCTCTCAGAACCTCATGTTTCGTTCACCGGGATCATTGGTGCAGTAGCCAGTGGTTCTTTTGGGGATTGCTCAAAAAGAATGTCCATGCAAAATGAAATACTAAAATCCAATGCCTTTAAATATTTTGATGAGAGGAACAAGTTTGCTGCCTTTGCAGACCTCTTTGCGTCTGTTAATTTTACAGCTCAACACGGGAATTTTCAGAGGCTTCTCCTGGATTTGACAAGGGTAAGCGCCCGGTTAGATATATCCTCAGGATCATTGTTCTTACGTGGTGCTTCT ] [+] EMBL CA763779 [ GTCTGGATTGAGTTATCATGTACTATTGCAGCAGAATAGTGGAGAACCAAAATGTTTTGGTGGTGGTGAAGAAACCAGTGATGTTCCTGTTGCTCTGTTACCAGGGTTATGTGCTAAGGCAGCTGTTTCGATTAAGAAAAGCATTGATGTTTGGAGGAAAAAAGAAGATAAGCTAAAAAATGTCCAGCCGTATGATGTATTTCTCTCAGAACCTCATGTTTCGTTCACCGGGATCATTGGTGCAGTAGCCAGTGGTTCTTTTGGGGATTGCTCAAAAAGAATGTCCATGCAAAATGAAATACTAAAATCCAATGCCTTTAAATATTTTGATGAGAGGAACAAGTTTGCTGCCTTTGCAGACCTCTTTGCGTCTGTTAATTTTACAGCTCAACACGGGAATTTTCAGAGG ] [-] EMBL CB624398 [ AGGCTTCTCCTGGATTTGACAAGGGTAAGCGCCCGGTTAGATATATCCTCAGGATCATTGTTCTTACGTGGTGCTTCTCAGCTTGCACAAGATTTCTTCTTCTCTCGACGCCCTGATTTAGAGACATTCTGTGATGTTTGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATCGACTGGGCTCTGAAGGTCCTGGGTTCCGCAAAGGCCACTGCTTGGTATTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGCAATAAGTCAATACGTGTCGACGACAATATATTTCTAGTTGTGTTTCATACTTGCTTTGGGCATCAGAAGAATACTTGCTGATGTAAGTGATGGTCATCTGAATGCCGTCTGTTATATATTCATC ] [-] EMBL CB624397 [ AACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATAGACTGGGTTCTGAAGGTCTTGGGTTCCGCAAAGGACACTGTTTGGTATTTTCTTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTAATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATTTCGGTGTTTTGCATTCACCTGTTGAAGACTGTTATTTTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGCCTTGACGGAGGGAAGTTTTTAGATTGTTTGGGTTCTGTAGAATAGTGTAGTTATGCAATAAGT ] consensusID : consensus_12883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ATNCGGCACGNGCGGTCACCAGCTTCCTTTGCGCCGCCCGCGTCCGACACGCGGCGGCGGCGGAAGATGTTGCGGCGGNTGCCANNGATGGCGGACGGGGACCGGCGGTGGGAGCTGGACCTGGAAACACCNGCGNCNNTAGAAGGCGCGGCGCGCCCCGTCNCCGGCGNCCCGCTGCCGCTCGGCCTCTNGCGGGGGCCCGGGTCACCCGCACGNANCNNCTCGNCTTCCTCCNCCGCTTCATGGCCTCGCCGCACGTCCNCNCCTACNCCGCCNCCGGCGCCGGCCTCTCCGTCCACCACGCCCNCCTCGTCCNCNTNGCCCNCGNCTTGTCTTNNNCNNTCTTGGNGCANCTTCNTGTACNCNNGCTNGTTGCTGTTGTGNNAGNCNGGTTATCCCNTCTGCNNNNGGTCTCCTGNTCCNNTGATATCCAAAGGGTACCTGCCTTANTGTTATGTCTCTNNGTGTTGGCNCCGNGAGCNNTTGNTNNCCCCCANTACCNCTNNNGCNGNTGGGNGCTGTNCAATCTNANAAAAGGGGGAATCNGGGCAAAGTCCATATTTNNACCNNGCTTNCCCNTCTNNAANATNCCNTNNGNNAGCTCTTGGCCNTGGATTATTNTTNGNAAAAGNNCCGGGTTANC] [+] EMBL BE229626 [ATNCGGCACGNGCGGTCACCAGCTTCCTTTGCGCCGCCCGCGTCCGACACGCGGCGGCGGCGGAAGATGTTGCGGCGGNTGCCANNGATGGCGGACGGGGACCGGCGGTGGGAGCTGGACCTGGAAACACCNGCGNCNNTAGAAGGCGCGGCGCGCCCCGTCNCCGGCGNCCCGCTGCCGCTCGGCCTCTNGCGGGGGCCCGGGTCACCCGCACGNANCNNCTCGNCTTCCTCCNCCGCTTCATGGCCTCGCCGCACGTCCNCNCCTACNCCGCCNCCGGCGCCGGCCTCTCCGTCCACCACGCCCNCCTCGTCCNCNTNGCCCNCGNCTTGTCTTNNNCNNTCTTGGNGCANCTTCNTGTACNCNNGCTNGTTGCTGTTGTGNNAGNCNGGTTATCCCNTCTGCNNNNGGTCTCCTGNTCCNNTGATATCCAAAGGGTACCTGCCTTANTGTTATGTCTCTNNGTGTTGGCNCCGNGAGCNNTTGNTNNCCCCCANTACCNCTNNNGCNGNTGGGNGCTGTNCAATCTNANAAAAGGGGGAATCNGGGCAAAGTCCATATTTNNACCNNGCTTNCCCNTCTNNAANATNCCNTNNGNNAGCTCTTGGCCNTGGATTATTNTTNGNAAAAGNNCCGGGTTANC] consensusID : consensus_12883#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [TTAGAGACATTCTGTGATGTTCGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATCGACTGGGCTCTGAAGGTCATGGGTTCCGCAAAGGCCACTGCTTGGTATTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGATATTGGTGCCAACGAGAACTAGGTCAGGTGACTGTAGATGCTACGCAGTGTGCTTCATCAAGGCAGTTCGTAGAGGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCCGCCGAAGACTGTTATTTTGGCAGGCTGTAGTTGTGGTCAGTGGTTAAAGCAGCCTGTTGTTTAACAGGCAATGAGCCTTGAAGATCCCACCGCCCGTCCCCGTCCGCCATCCATCGCATCCGCCGCAACATCTCCGCCGCCGCCGCGCGTCGGACGCGGGCGGCGCAAAGGAAGCTGGTGACCGAGGCG] [-] EMBL CB652940 [TTAGAGACATTCTGTGATGTTCGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATCGACTGGGCTCTGAAGGTCATGGGTTCCGCAAAGGCCACTGCTTGGTATTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGATATTGGTGCCAACGAGAACTAGGTCAGGTGACTGTAGATGCTACGCAGTGTGCTTCATCAAGGCAGTTCGTAGAGGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCCGCCGAAGACTGTTATTTTGGCAGGCTGTAGTTGTGGTCAGTGGTTAAAGCAGCCTGTTGTTTAACAGGCAATGAGCCTTGAAGATCCCACCGCCCGTCCCCGTCCGCCATCCATCGCATCCGCCGCAACATCTCCGCCGCCGCCGCGCGTCGGACGCGGGCGGCGCAAAGGAAGCTGGTGACCGAGGCG] consensusID : consensus_12883#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CTTCCTTNGCGCCGCCCGCNTCCGNCGCGCGGCGGCGGCGGNGNTGTTGCGGCGGNTGCCNTNGATGGCGGNCNGGGNCTGGCGGTGGGNGCTGGNCNTGGANNCGCCGGCNNCANTNGAAGGCGCGGCNCGCCCNGTCCCNGGCGNCCCGCTGCCGCTCGGCCTNTNGCGGGGGCCCCGGGTCACCCGCACGNAGCAGCTCNNCTTNCTCCNCCGCTTNNTGGCCTNGCCGCTCGTCCCCTNCTNCTCCGCCTCCGGCGCCGGCCTNTNNGTCNNCCACGCCCACCTNGTNCNCNTNGCCCGCNGCTTGTCTTTTACTNTCTTGGNCCGCTTCGTGTACNGNNGCTTNTNGCTGTTGTGNNGGNGNAGTTNTNCNNTCGGCCNGAGGTNTNCTGGTNCCTGNATATNCAGNGGCCCTGCCCTGNTGTTGTTGTCTCTGNGTGTTGGCNCCNNACTCTTGNTTNCCCNNNTANNGCTTTGCTGCTGGAGCNGTACNATCTGAANAAAGGGGNTCCGGGCNNACCATATTNCNCCCCAGCTNCNTCCNNNTGTTNCTTGGAGCTNTTNGCTNNNATATNCTTGTAAAACNGG] [+] EMBL BE229619 [CTTCCTTNGCGCCGCCCGCNTCCGNCGCGCGGCGGCGGCGGNGNTGTTGCGGCGGNTGCCNTNGATGGCGGNCNGGGNCTGGCGGTGGGNGCTGGNCNTGGANNCGCCGGCNNCANTNGAAGGCGCGGCNCGCCCNGTCCCNGGCGNCCCGCTGCCGCTCGGCCTNTNGCGGGGGCCCCGGGTCACCCGCACGNAGCAGCTCNNCTTNCTCCNCCGCTTNNTGGCCTNGCCGCTCGTCCCCTNCTNCTCCGCCTCCGGCGCCGGCCTNTNNGTCNNCCACGCCCACCTNGTNCNCNTNGCCCGCNGCTTGTCTTTTACTNTCTTGGNCCGCTTCGTGTACNGNNGCTTNTNGCTGTTGTGNNGGNGNAGTTNTNCNNTCGGCCNGAGGTNTNCTGGTNCCTGNATATNCAGNGGCCCTGCCCTGNTGTTGTTGTCTCTGNGTGTTGGCNCCNNACTCTTGNTTNCCCNNNTANNGCTTTGCTGCTGGAGCNGTACNATCTGAANAAAGGGGNTCCGGGCNNACCATATTNCNCCCCAGCTNCNTCCNNNTGTTNCTTGGAGCTNTTNGCTNNNATATNCTTGTAAAACNGG] consensusID : consensus_12883#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [GAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGCAATAAGTCAATACGTGTCGACGCCAATATATTTCTAGTTGTGTTTCATACTTGCTTTGGGCATCGGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATCCCGTCTGTTATATATTCATCCACTGATTGCTCGGTCAAAAAAAAAAAAAAAA] [-] EMBL CF312140 [GAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGCAATAAGTCAATACGTGTCGACGCCAATATATTTCTAGTTGTGTTTCATACTTGCTTTGGGCATCGGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATCCCGTCTGTTATATATTCATCCACTGATTGCTCGGTCAAAAAAAAAAAAAAAA] [+] EMBL AA749673 [ AGGTTGGCTCATCGTATCACATAAAGATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCAGGTGACTGTAGATGTTACGCAG GTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTCACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTGTGTTCATTGGTTAAAACAGCTT NTTAACAG ] consensusID : consensus_12883#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence [CAAGGACACTGACATGGACTGAATGAGTAAAAAACTGGAAACCATGACACTGACGTGGACTGAAGGAGTATAAAACTGGACACGAGGACACTGACATGGACTGAATAGTAGTCGATCTATCGTACAACTTGAATTGTTGATGCGAATCACATCTGATAAA] [+] EMBL CF327530 [CAAGGACACTGACATGGACTGAATGAGTAAAAAACTGGAAACCATGACACTGACGTGGACTGAAGGAGTATAAAACTGGACACGAGGACACTGACATGGACTGAATAGTAGTCGATCTATCGTACAACTTGAATTGTTGATGCGAATCACATCTGATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CCTTTGCGCCGCCCGCGTCCGACGCGCGGCGGCGGCGGAGATGTTGCGGCGGATGCGATG 60 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 GATGGCGGACGGGGACGGGCGGTGGGAGCTGGACGTGGAGACGCCGGCGACGATGGAGGG 120 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CGCGGCGCGCCCCGTCCCCGGCGACCCGCTGCCGCTCGGCCTCTCGCGGGGGCCCCGGGT 180 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CACCCGCACGAAGCAGCTCGACTTCCTCCACCGCTTCATGGCCTCGCCGCTCGTCCCCTC 240 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CTTCTCCGCCTCCGGCGCCGGCCTCTCCGTCCACCACGCCCACCTCGTCCACCTCGCCCA 300 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CAACTTGTCTTTTACTATCTTGGAGCAACTTCATGTACAGAAGCTTGTAGCTGTTGTGAA 360 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 AGAGAAGTTATCAAATCGGCAAGAGGTCTCCTGGTCCAATGATATCAAAAGGCACCTGCA 420 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 TGATGTTATGTCTCTAGGTGTTGGCACAGAACTCTTGATTACACCAGATACCACTTTGCT 480 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 ACTGGAGCTGTACAATCTGAAGAAGGGGGATCGGGGCAAAGCAATATTTCGACACAAGCT 540 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 TCCTCATCAAAATATTACATTAGAAGCATCTTGGCCTGGATTATTCATTGATAAAAACGG 600 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 GGTTTACTGGGATGTGCCATTGTCATTATCAGCTGACCTGGCTTCAGTTGGCTCCGAGTC 660 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 TGGATTGAGTTATCATGTACTATTGCAGCAGAATAGTGGAGAACCAAAATGTTTTGGTGG 720 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 TGGTGAAGAAACCAGTGATGTTCCTGTTGCTCTGTTACCAGGGTTATGTGCTAAGGCAGC 780 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 TGTTTCGATTAAGAAAAGCATTGATGTTTGGAGGAAAAAAGAAGATAAGCTAAAAAATGT 840 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CCAGCCGTATGATGTATTTCTCTCAGAACCTCATGTTTCGTTCACCGGGATCATTGGTGC 900 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 AGTAGCCAGTGGTTCTTTTGGGGATTGCTCAAAAAGAATGTCCATGCAAAATGAAATACT 960 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 AAAATCCAATGCCTTTAAATATTTTGATGAGAGGAACAAGTTTGCTGCCTTTGCAGACCT 1020 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 CTTTGCGTCTGTTAATTTTACAGCTCAACACGGGAATTTTCAGAGGCTTCTCCTGGATTT 1080 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 GACAAGGGTAAGCGCCCGGTTAGATATATCCTCAGGATCATTGTTCTTACGTGGTGCTTC 1140 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ------------------------------------------------------------ consensus_12883#3 ------------------------------------------------------------ consensus_12883#0 TCAGCTTGCACAAGATTTCTTCTTCTCTCGACGCCCTGATTTAGAGACATTCTGTGATGT 1200 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 ----------------------------------------TTAGAGACATTCTGTGATGT 20 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 -----------------------------------ATNCGGCACGNGCGGTCACCAGCTT 25 consensus_12883#3 ---------------------------------------------------------CTT 3 consensus_12883#0 TTGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGT 1260 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 TCGTCCTGATGTGATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGT 80 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 CCTTTGCGCCGCCCGCGTCCGACACGCGGCGGCGGCGGAAGATGTTGCGGCGGNTGCCAN 85 consensus_12883#3 CCTTNGCGCCGCCCGCNTCCGNCGCGCGGCGGCGGCGGN-GNTGTTGCGGCGGNTGCCNT 62 consensus_12883#0 TGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTC 1320 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 TGAATCCACAGTTACCATTGACCCTAAAAAACAAGACCATTTCGTTCGTGTGGACGACTC 140 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 NGATGGCGGACGGGGACCGGCGGTGGGAGC--TGGACCTGGAAACACCNGCGNCNNTAGA 143 consensus_12883#3 NGATGGCGGNCNGGGNCTGGCGGTGGGNGC--TGGNCNTGGANNCGCCGGCNNCANTNGA 120 consensus_12883#0 AGTTTTTGCAATCGACTGGGCTCTGAAGGTCCTGGGTTCCGCAAAGGCCACTGCTTGGTA 1380 consensus_12883#4 ------------------------------------------------------------ consensus_12883#2 AGTTTTTGCAATCGACTGGGCTCTGAAGGTCATGGGTTCCGCAAAGGCCACTGCTTGGTA 200 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 AGGCGCGGCGCGCCCCGTCNCCGGCGNCCCGCTGCCGCTCGGCCTCTNGCGGGGGCCC-G 202 consensus_12883#3 AGGCGCGGCNCGCCCNGTCCCNGGCGNCCCGCTGCCGCTCGGCCTNTNGCGGGGGCCCCG 180 consensus_12883#0 TTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTG 1440 consensus_12883#4 ----------------GAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTG 44 consensus_12883#2 TTCTCCTAAGCATCAGGAGGCAATGGTGGAGCTTCGGTTCTTTGAGACCTGAAGAGGTTG 260 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 GGTCACCCGCACGNANCNNCTCGNCTTCCTCCNCCGCTTCATGGCCTCGCCGCACGTCCN 262 consensus_12883#3 GGTCACCCGCACGNAGCAGCTCNNCTTNCTCCNCCGCTTNNTGGCCTNGCCGCTCGTCCC 240 consensus_12883#0 GCTCATCGTATCACATAAACATGATTT--TCAAAGGCTTTCTT-TCTCG-TATTGGTGCC 1496 consensus_12883#4 GCTCATCGTATCACATAAACATGATTT--TCAAAGGCTTTCTT-TCTCG-TATTGGTGCC 100 consensus_12883#2 GCTCATCGTATCACATAAACATGATTT--TCAAAGGCTTTCTT-TCTCGATATTGGTGCC 317 consensus_12883#5 -----------------------------------------------------------C 1 consensus_12883#1 CNCCTACNCCGCCNCCGGCGCCGGCCTCTCCGTCCACCACGCCCNCCTCGTCCNCNTNGC 322 consensus_12883#3 CTNCTNCTCCGCCTCCGGCGCCGGCCTNTNNGTCNNCCACGCCCACCTNGTNCNCNTNGC 300 consensus_12883#0 AATGAGAACTAGGTCAGGTGACTG--TAGATGTTACGCA-GTGTGCTTCATCAAGGCAGT 1553 consensus_12883#4 AATGAGAACTAGGTCAGGTGACTG--TAGATGTTACGCA-GTGTGCTTCATCAAGGCAGT 157 consensus_12883#2 AACGAGAACTAGGTCAGGTGACTG--TAGATGCTACGCA-GTGTGCTTCATCAAGGCAGT 374 consensus_12883#5 AAGGACACTGACATGGACTGAATGAGTAAAAAACTGGAA--ACCATGACACTGACGTGGA 59 * * * * * consensus_12883#1 CCNCGNCT-TGTCTTNNNCNNTCTTGGNGCANCTTCNTGTACNCNNGCTNGTTGCTGTTG 381 consensus_12883#3 CCGCNGCT-TGTCTTTTACTNTCTTGGNCC-GCTTCGTGTACNGNNGCTTNTNGCTGTTG 358 consensus_12883#0 TTGTAGATGTGATCAAGTTTATCTCGGTGT---CTTGCATTCACCTGTTGAAGACTGTTA 1610 consensus_12883#4 TTGTAGATGTGATCAAGTTTATCTCGGTGT---CTTGCATTCACCTGTTGAAGACTGTTA 214 consensus_12883#2 TCGTAGAGGTGATCAAGTTTATCTCGGTGT---CTTGCATTCACCCGCCGAAGACTGTTA 431 consensus_12883#5 CTGAAGGAGTATAAAACTGGACACGAGGAC--ACTGACATGGACTGAATAGTAGTCGATC 117 * * * * * * consensus_12883#1 TGNNAGNCNGGTTATCCCNTCTGCNNNNGGTCTCCTGNTCCNNTGATATCCAAAGGGTAC 441 consensus_12883#3 TGNNGGNGNAGTTNTNCNNTCGGCCNGAGGTNTNCTGGTNCCTGNATATNCAGNGGC--C 416 consensus_12883#0 TTCTTGT-AGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGT-TTAACAGGCAAT 1668 consensus_12883#4 TTCTTGT-AGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGT-TTAACAGGCAAT 272 consensus_12883#2 TTTTGGC-AGGCTGTAGTTGTGGTCAGTGGTTAAAGCAGCCTGTTGT-TTAACAGGCAAT 489 consensus_12883#5 TATC-GTACAACTTGAATTGTTGATGCGAATCACATCTGATAAA---------------- 160 * * * * consensus_12883#1 CTGCCTTANTGTTAT-GTCTCTNNGTGTTGGCNCCGNGAGC--NNTTGNTNNCCCCCANT 498 consensus_12883#3 CTGCCCTGNTGTTGTTGTCTCTGNGTGTTGGCNCCNNA-----CTCTTGNTTNCCCNNNT 471 consensus_12883#0 GAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGC 1728 consensus_12883#4 GAGCCTTGACGGAGGGCAGTTCTTAGATTGTTTCGGTTCTGTAGAATAGTGTAGTTATGC 332 consensus_12883#2 GAGCCTTGAAG------ATCCCACCGCCCGTCCCCGTCC--------------GCCATCC 529 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ACCNCTNNNGCNGNTGGGNGCTGTNCAATCTNANAAAAGGGGGAATCNGGGCAAAGTCCA 558 consensus_12883#3 ANNGCTTTG-CTGCTGG-AGCNGTACNATCTGAANAAAGGGG--NTCCGGGCNNA--CCA 525 consensus_12883#0 AATAAGTCAATACGTGTCGACGACAATATATTTCTAGTTGTG--TTTCATACTTGCTTTG 1786 consensus_12883#4 AATAAGTCAATACGTGTCGACGCCAATATATTTCTAGTTGTG--TTTCATACTTGCTTTG 390 consensus_12883#2 ATCGCATC------------CGCCGCAACATCTCCGCCGCCG--CCGCGCGTCGGACGCG 575 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 TATTTNNACCNNGCTTNCCCNTCTNNAANATNCCNTNNGNNAGCTCTTGGCCNTGGATTA 618 consensus_12883#3 TATTNCNCCCCAGCTNCNTCCNNNTG-------TTNCTTGGAGCTNTTNGC--TNNNATA 576 consensus_12883#0 GGCATCAGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATGCCGTCTGTTATATA 1846 consensus_12883#4 GGCATCGGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATCCCGTCTGTTATATA 450 consensus_12883#2 GGCGGCGCAAAGGAAGCTGGTGACCGAGGCG----------------------------- 606 consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 TTNTTNGNAAAAGNNCCGGGTTANC----------------------------------- 643 consensus_12883#3 TNCTTGTAAAACNGG--------------------------------------------- 591 consensus_12883#0 TTCATCCACTGATTGCTCGGTCAGGCCTGAAGAGTAGTTGATCTATCTTACAAGTTGAAT 1906 consensus_12883#4 TTCATCCACTGATTGCTCGGTCAAAAAAAAAAAAAAAA---------------------- 488 consensus_12883#2 ------------------------------------------------------------ consensus_12883#5 ------------------------------------------------------------ consensus_12883#1 ---------------------------------------- consensus_12883#3 ---------------------------------------- consensus_12883#0 TGTTGATGCGAATCACATCTGATAAATGAAATCTTCTCAG 1946 consensus_12883#4 ---------------------------------------- consensus_12883#2 ---------------------------------------- consensus_12883#5 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||