These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12885#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1266 fasta sequence [ACCGAAAACCGCAGCGAACGCACCTACCTACCACCCAAACGGCAAGCGGCAGTGCCAATGGAGCAGCAACAGGCGGCGCCCATGGCGA-GGAACAGGAAGGTGGTGCTGCGCGAGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGAGGCCGCCGC-CCCCGCCCCGGCGGTCCTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTGGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATGCCTGGTTTTACAGCTTATGCTGGTTTCT-ATG-AGATCTGCTCACCGAAGAAGGGCGAGTTTGTTTTTGTTTCGGCTGCATCAGGAGCAGTTGGGCAAATTGTAGGACAACTCGCAAAGCTTCATGGATGCTATGTTGTGGGAAGTGCTGGAACAAATCAGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCCTTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCAATGCTTGATGCTGTACTCCTCAACATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAA-CATCTTCTGCCTTGTA-CCAAAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGCTGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAAGGTTGTGTGTGTGTCACA-GGAGTTAAGTCAGTTTACATTCTGATGAGTATCAGAAACCTCTCTGAATTGAGGTGATAAGTAATAGATGTTTGTCTTAACATGTTCAAAATATACCT-GGGAAAAAAGTTCAAATCGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK063674 [ACCGAAAACCGCAGCGAACGCACCTACCTACCACCCAAACGGCAAGCGGCAGTGCCAATGGAGCAGCAACAGGCGGCGCCCATGGCGA GGAACAGGAAGGTGGTGCTGCGCGAGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGAGGCCGCCGC CCCCGCCCCGGCGGTCCTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTGGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATGCCTGGTTTTACAGCTTATGCTGGTTTCT ATG AGATCTGCTCACCGAAGAAGGGCGAGTTTGTTTTTGTTTCGGCTGCATCAGGAGCAGTTGGGCAAATTGTAGGACAACTCGCAAAGCTTCATGGATGCTATGTTGTGGGAAGTGCTGGAACAAATCAGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCCTTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCAATGCTTGATGCTGTACTCCTCAACATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAA CATCTTCTGCCTTGTA CCAAAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGCTGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAAGGTTGTGTGTGTGTCACA GGAGTTAAGTCAGTTTACATTCTGATGAGTATCAGAAACCTCTCTGAATTGAGGTGATAAGTAATAGATGTTTGTCTTAACATGTTCAAATTATACCT GGG ] [+] EMBL C26689 [ GCACCTACCTACCACCCAAACGGCAAGCGGCAGTGCCAATGGAGCAGCAACAGGCGGCGCCCATGG GATGGAACAGGAAGGTGGTGCTGCGCGAGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTNCCGGAGG CGCCGC CCCCGCCCCGGCGGTCCTCGTNAAGAATCTCTACCTCTCCTGCNACCCCTACATGCGCGGCCGGATGCGGGACTTCCANGG ] [+] EMBL BP184867 [ acgaggCACCCAAACGGCAAGCGGCAGTGCCAATGGAGCAGCAACAGGCGGCGCCCATGGCGA GGAACAGGAAGGTGGTGCTGCGCGAGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGAGGCCGCCGC CCCCGCCCCGGCGGTCCTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTGGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATGCCTGGTTTTACAGCTTATGCTGGTTTCT ATG AGATCTGCTCACCGAAGAAGGGCGAGTTTGTTTTTGTTTCGGCTGCATCAGGAGCAGTTGGGCAAATTGTAGGACAACTCGCAAAGCTTCATGGATGCTATGTTGTGGGAAGTGCTGGAACAAATCAGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGC ] [+] EMBL AK099151 [ CCCAAACGGCAAGCGGCAGTGCCAATGGAGCAGCAACAGGCGGCGCCCATGGCGA GGAACAGGAAGGTGGTGCTGCGCGAGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGAGGCCGCCGC CCCCGCCCCGGCGGTCCTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTGGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATGCCTGGTTTTACAGCTTATGCTGGTTTCT ATG AGATCTGCTCACCGAAGAAGGGCGAGTTTGTTTTTGTTTCGGCTGCATCAGGAGCAGTTGGGCAAATTGTAGGACAACTCGCAAAGCTTCATGGATGCTATGTTGTGGGAAGTGCTGGAACAAATCAGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCCTTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCAATGCTTGATGCTGTACTCCTCAACATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAA CATCTTCTGCCTTGTA CCAAAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGCTGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAAGGTTGTGTGTGTGTCACA GGAGTTAAGTCAGTTTACATTCTGATGAGTATCAGAAACCTCTCTGAATTGAGGTGATAAGTAATAGA ] [+] EMBL AU088575 [ AGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGA GNCGCCGC CCCCGCCCCGGCGGTCCTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTGGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATA CCCTCTCTTACCATTTGGGGCTTCTTGGNATGCCTGGTTTTAAAGNTAATGCTGG TTCTAATG A ATTTNCTCACC ] [+] EMBL C27603 [ AGTACATCGCCGGCC GNCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGA CNG CGCNCCCCGCCCCGGNTNCACTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTNGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATG CTGGGTTTACAGCTTATGCTGGTTTCT ATT AGATCTNCTCACCG AGAAGGGCGAGTTT TTTTTGTTTC ] [+] EMBL AU166897 [ AGTACATCGCCGGCCGGCCGCCGAGGGAGGACGACATGGTGCTCGTCGACGGCGGCACGGTGGCCCTGCGCGTGCCGGAGGCCGCCGC CCCCGCCCCGGCGGTCCTCGTGAAGAATCTCTACCTCTCCTGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGATCCTACATCCCGCCGTTCAAGCCCGGATCCGTTATTGAAGGGCTTGGAGTGGCGAGAGTGGTGGATTCCACCCATCCGGGATTCAGCGCGGGCGACATTGTCTCCGGGATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATGCCTGGTTTTACAGCTTATGCTGGTTTCT ATG AGATCTGCTCACCGAAGAAGGGCGAGTTTGTTT ] [+] EMBL CA764728 [ GATGACTGGTTGGGAGGAATACAGTCTGATCGACAGGCCTGAACAGCTGAGCAAGATTCAGCAAAGTGACATACCCCTCTCTTACCATTTGGGGCTTCTTGGCATGCCTGGTTTTACAGCTTATGCTGGTTTCT ATG AGATCTGCTCACCGAAGAAGGGCGAGTTTGTTTTTGTTTCGGCTGCATCAGGAGCAGTTGGGCAAATTGTAGGACAACTCGCAAAGCTTCATGGATGCTATGTTGTGGGAAGTGCTGGAACAAATCAGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCCTTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCACTGCTTGATGCTGTACTCCTCAACATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAA CATCTTCTGCCTTGTA CCAAAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGCTGCGTTGGTTGGTCTATTCAGNGGNAAAAAAGNTGGCAAGAAGGTTGGGTGTGTGTCACAGGGAGNTAAGTCAGGGGACATTCTGATGAGTATCANAAANCTCTCTGAATTGAGGGGATAAGAAAAAAAGGNTTGGCTTAACAGGTTCAAAATATACCTGGGGAAAAAAGTTCAAA ] [+] EMBL AU092379 [ GTTTCT ATGAANATCTGCTCACCGAAGAAGGGCGAGTTTGTTTTTGTTTCGGCTGCATCAGGAGCAGTTGGGCAAATTGTAGGACAACTCGCAAAGCTTCATGGATGCTATGTTGTGGGAAGTGCTGGAACAAATCAGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCCTTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCAATGCTTGATGCTGTACTCCTCAACATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAA CATCTTCTGCCTTGTA CCAAAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGCTGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAAGGTTGTGTGTGTGTCACA GGAGTTAAGTCAGTTTACATTCTGATGAGTATCAGAAACCTCTCTGAATTGAGGTGATAAGTAATAGATGTTTGTCTTAACATGTTCAAAAaaaa ] [+] EMBL BI799040 [ AGTTGAGCTCTTGAAGGGCAA TTTGGATTTGATCCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCCTTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCAATGCTTGATGCTGTACTCCTCAACATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAA CATCTTCTGCCTTGTA CC AAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGC AAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGCTGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAA GTTGTGTGTGTGTCACA GGAGTTAAGTCAGTGTACATTCTGATGAGTATCAGAAACCTCTCTGAATTGAGGTGATAAGTAATAGATGTTTGTCTTAACATGTTCAAAAaaa ] [+] EMBL C97135 [ TGACCCTGTAGGGACCCACAACCATCTTCTGCCTTGTACCCAAGGAGGATAAGAATGCAGGGNTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTCAGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCNCCTGCTGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAAGGTTGTGTGTGTGTCACA GGAGTTAAGTCAGTTTACATTCTGATGAGTATCAGAAACCTCTCTGAATTGAGGTGATAAGTAATAGATGTTTGTCTTAACATGTTCAAATTATACCT GGGAAAAAAGTTCAATTCGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||