cluster # 12886

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Oryza sativa
cluster # 12886 cluster # 12886 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12886#0 length = 2055 sequences # 9

consensus_12886#1 length = 690 sequences # 1
consensus_12886#2 length = 482 sequences # 1

consensusID : consensus_12886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2055
fasta sequence

                              [ACCAAGAGCGCTTATAAACATAAAAAACATCTCAAACACAACCCAAAATAGGGCCAAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGACTTCATCCCCTGGCTCAGCTGGGCGGACACCAACGGCATCAACGCCCGCCTCGTCGCGGCGCGCACCGCGCTCGACAGGTTCATCGACAAGATCATCGACGAGCACATGGAGCGCGGCAAGAACCCCGACGACGCCGACGCCGACATGGTCGACGACATGCTCGCGTTCCTCGCCGAGGCCAAGCCGCACGCCGGCAAGGCCGCCGCCGCCGCCGCCGGCGCCGGCGACGGGGCCGACGACCTGCAGAACACGCTCCGCCTCACCCGCGACAACATCAAGGCCATCATCATGGACGTGATGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCGGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGACGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGTCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGCGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGCCGGCGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCTCCGGCCGCCGCTCGTGCCCGGGCATGGCGCTGGGGCTCTACGCGCTCGAGCTCGCCGTCGCGCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGACATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCACCCGCCTTTCCGCCGTCGCCACGCCCCGGCTCACCTGCCCCTTGTACTGACGGC-GGCC-GGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCC---TTTTTTTTTTTGCTGGTTTAATTTTC-TTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTTGTCATGAAAATTGAGAAAGAAAACACC]

[+] EMBL AK067847             [ACCAAGAGCGCTTATAAACATAAAAAACATCTCAAACACAACCCAAAATAGGGCCAAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCAAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGACTTCATCCCCTGGCTCAGCTGGGCGGACACCAACGGCATCAACGCCCGCCTCGTCGCGGCGCGCACCGCGCTCGACAGGTTCATCGACAAGATCATCGACGAGCACATGGAGCGCGGCAAGAACCCCGACGACGCCGACGCCGACATGGTCGACGACATGCTCGCGTTCCTCGCCGAGGCCAAGCCGCACGCCGGCAAGGCCGCCGCCGCCGCCGCCGGCGCCGGCGACGGGGCCGACGACCTGCAGAACACGCTCCGCCTCACCCGCGACAACATCAAGGCCATCATCATGGACGTGATGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCGGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGACGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGTCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGCGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB642082             [               AAACATACCAAACATCTCAAACACAACCCAAAATAGGGCCAAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB663604             [                                CAAACACAACCCAAAATAGGGCCAAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGACTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB620722             [                                       AACCCCCTATAGGGCCAAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCACGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGCGTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACATGGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCTCTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGTGCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAACCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGACGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTtca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSS4268A             [                                                       AAAATTCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGCGGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGTCACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCTTTCCCGCCGGGGCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGGANCG GGCCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTNATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB620723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGCGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGCCGGCGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCTCCGGCCGCCGCTCGTGCCCGGGCATGGCGCTGGGGCTCTACGCGCTCGAGCTCGCCGTCGCGCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGACATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCACCCGCCTCTCCGCCGTCGCCACGCCCCGGCTCACCTGCCCCTTGTACTGACGGC GGCC GGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTTTTGCTGGTTTAATTTTC TTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGGATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTTCCAGGCCACATAAG                                                         ]
[-] EMBL CB663605             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGCGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGCCGGCGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCTCCGGCCGCCGCTTGTGCCCGGGCATGGCGCTGGGGCTTTACGCGCTCGAGCTCGCCGTCGCGCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGACATGTCCGACATTTTTGGCCTCACCGCGCCGCGCGCCACCCGCTTTTCCGCCGTCGCCACGCCCCGGCTCACCTGCCCCTTGTACTGACGGC GGCC GGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCC   TTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAA                                                                                       ]
[-] EMBL CB639223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCGCGCGCCACCCGCCTTTCCGCCGTCGCCACGCCCCGGTTCACTTGCCCCTTGTACTGACGGC GGCC GGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCC   TTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTTGTCATGAAAATTGAGAAAGAAAACACC]
[+] EMBL AU086056             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCCACGCCCCGGCTCACCTGCCCCTTGTACTGACGGCNGGCCAGGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCC   TTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAAaaaaa                          ]




>consensus_12886#0
ACCAAGAGCGCTTATAAACATAAAAAACATCTCAAACACAACCCAAAATAGGGCCAAAAT
TCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGC
GGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGT
CACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGG
GCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGG
CCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCA
CGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGC
GTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACAT
GGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCT
CTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGT
GCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAA
CCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGA
CGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGA
CTTCATCCCCTGGCTCAGCTGGGCGGACACCAACGGCATCAACGCCCGCCTCGTCGCGGC
GCGCACCGCGCTCGACAGGTTCATCGACAAGATCATCGACGAGCACATGGAGCGCGGCAA
GAACCCCGACGACGCCGACGCCGACATGGTCGACGACATGCTCGCGTTCCTCGCCGAGGC
CAAGCCGCACGCCGGCAAGGCCGCCGCCGCCGCCGCCGGCGCCGGCGACGGGGCCGACGA
CCTGCAGAACACGCTCCGCCTCACCCGCGACAACATCAAGGCCATCATCATGGACGTGAT
GTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCA
CAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCG
GGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGAC
GCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGT
CGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCG
CGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGCCGG
CGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCTC
CGGCCGCCGCTCGTGCCCGGGCATGGCGCTGGGGCTCTACGCGCTCGAGCTCGCCGTCGC
GCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCTCGA
CATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCACCCGCCTTTCCGCCGTCGCCAC
GCCCCGGCTCACCTGCCCCTTGTACTGACGGCGGCCGGCGACCGCGGCGGCGTACGGCAA
GAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCT
TGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTGCTGGTTTAATTTTCTTTT
TTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATA
ATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGG
TGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTTGTCATGAAAATT
GAGAAAGAAAACACC

consensusID : consensus_12886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [AATTAGGAGGGTGAAAACAAGGTATACCATATAGGTATTTAGGGAACCACATAAGGTGTATTTTGGAGTGAAATTTAGGTTTTACTTTTGATAAGCATCGATGTGTACTGGGAAGGTTAGTGGATATACGGGAGAGATTGGAGTAGCGAGGTTTGCCAAGGGTTTTAATTGGTAGCTCCCGAACGGAATTAAGCGGTCCGAGCTTAACATGTCAGAAATTTTAGGCTTCACCGCGCGGCGCGCCACCCGCTTTTCCGCTGTCGCCACGCCCAGGCTCACCTGCCCCTTGTAATGACGGCGGCCGGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTGGTCATGAAAATTGAGAAAGAAAACACCTCGCTTTCCACGCGTACGCTTAAAAAAAAAAAAAAAAAAAACTCGAGA]

[-] EMBL AW155490             [AATTAGGAGGGTGAAAACAAGGTATACCATATAGGTATTTAGGGAACCACATAAGGTGTATTTTGGAGTGAAATTTAGGTTTTACTTTTGATAAGCATCGATGTGTACTGGGAAGGTTAGTGGATATACGGGAGAGATTGGAGTAGCGAGGTTTGCCAAGGGTTTTAATTGGTAGCTCCCGAACGGAATTAAGCGGTCCGAGCTTAACATGTCAGAAATTTTAGGCTTCACCGCGCGGCGCGCCACCCGCTTTTCCGCTGTCGCCACGCCCAGGCTCACCTGCCCCTTGTAATGACGGCGGCCGGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTGGTCATGAAAATTGAGAAAGAAAACACCTCGCTTTCCACGCGTACGCTTAAAAAAAAAAAAAAAAAAAACTCGAGA]




>consensus_12886#1
AATTAGGAGGGTGAAAACAAGGTATACCATATAGGTATTTAGGGAACCACATAAGGTGTA
TTTTGGAGTGAAATTTAGGTTTTACTTTTGATAAGCATCGATGTGTACTGGGAAGGTTAG
TGGATATACGGGAGAGATTGGAGTAGCGAGGTTTGCCAAGGGTTTTAATTGGTAGCTCCC
GAACGGAATTAAGCGGTCCGAGCTTAACATGTCAGAAATTTTAGGCTTCACCGCGCGGCG
CGCCACCCGCTTTTCCGCTGTCGCCACGCCCAGGCTCACCTGCCCCTTGTAATGACGGCG
GCCGGCGACCGCGGCGGCGTACGGCAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCA
GACGCGTGTGGCGCCATTGGAGGAGCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTT
TTTTTTTTGCTGGTTTAATTTTCTTTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCA
GAACAATAAGTGGATTAGTAGGGTATAATTAAGGGTGACAGTGTGATATATAGACTATAA
GATCAAAGTTGTAAATTTGGTGTCCGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATT
TTCTTGTAAAACTTGGTCATGAAAATTGAGAAAGAAAACACCTCGCTTTCCACGCGTACG
CTTAAAAAAAAAAAAAAAAAAAACTCGAGA

consensusID : consensus_12886#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [TTTGATATATTATAGAATTGAAAACAAAATTTTCATAGCAAATACTTGTTGTAGTTAGATTTACCCGAGCATCGTAAATTTTCTAGTCTCTGCCACTGATTAGAAATGGAGGGAATAATAAGTAAACAACAAGTAGTGTGAGTAATAAGCAAAGGTGATGACGTGGCATGCAGGACGTGATGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCGGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGACGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGTCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGC]

[+] EMBL BE230538             [TTTGATATATTATAGAATTGAAAACAAAATTTTCATAGCAAATACTTGTTGTAGTTAGATTTACCCGAGCATCGTAAATTTTCTAGTCTCTGCCACTGATTAGAAATGGAGGGAATAATAAGTAAACAACAAGTAGTGTGAGTAATAAGCAAAGGTGATGACGTGGCATGCAGGACGTGATGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCGGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGACGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGTCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCGC]




>consensus_12886#2
TTTGATATATTATAGAATTGAAAACAAAATTTTCATAGCAAATACTTGTTGTAGTTAGAT
TTACCCGAGCATCGTAAATTTTCTAGTCTCTGCCACTGATTAGAAATGGAGGGAATAATA
AGTAAACAACAAGTAGTGTGAGTAATAAGCAAAGGTGATGACGTGGCATGCAGGACGTGA
TGTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGC
ACAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCC
GGGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGA
CGCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCG
TCGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCC
GC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12886#0      ACCAAGAGCGCTTATAAACATAAAAAACATCTCAAACACAACCCAAAATAGGGCCAAAAT 60
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      TCTAGAATATTATTTTTGTTTTGAAAGGAATTTAAGTTTGTGTGGTGTGTCATCCATGGC 120
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GGACATGGTGAAGTTCACCATGGAGTGGCTTCAGGATCCTCTGAGCCTGGCGATCGTCGT 180
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CACGGTGGCCGTCCTAATCATGCGGATGCAGCGGCGGCGCGCGGCGCCGTTCCCGCCGGG 240
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GCCGAAGCCGCTGCCGATCGTCGGCAACATGGCGATGATGGACCAGCTGACGCACCGCGG 300
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CCTGGCAGCGCTGGCGAAGGAGTACGGCGGCCTGATGCACCTCCGGCTCGGCCGGCTCCA 360
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CGCGTTCGCCGTGTCGACGCCGGAGTACGCGCGCGAGGTGCTCCAGGCGCAGGACGGCGC 420
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GTTCTCGAACAGGCCGGCGACCACGGCGATCGCCTACCTCACCTACGACCGCGCGGACAT 480
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GGCGTTCGCGCACTACGGGCCCTTCTGGCGCCAGATGAGGAAGCTGTGCGTGGTGAAGCT 540
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CTTCAGCCGGCGCCGCGCCGAGACGTGGCTCGCCGTGCGCGACGAGTCCGCGGCGCTCGT 600
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GCGCGCCGTGGCGGCGTCGCGCGGCGAGGCCGCCGTCAACCTCGGCGAGCTCATCTTCAA 660
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CCTCACCAAGAACGTCATCTTCCGCGCCGCGTTCGGCACGCGCGACGGCGAGGGGCACGA 720
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CGAGTTCATCGCCATCCTCCAGGAGTTCTCCAAGCTGTTCGGCGCGTTCAACATCGGCGA 780
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CTTCATCCCCTGGCTCAGCTGGGCGGACACCAACGGCATCAACGCCCGCCTCGTCGCGGC 840
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GCGCACCGCGCTCGACAGGTTCATCGACAAGATCATCGACGAGCACATGGAGCGCGGCAA 900
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GAACCCCGACGACGCCGACGCCGACATGGTCGACGACATGCTCGCGTTCCTCGCCGAGGC 960
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CAAGCCGCACGCCGGCAAGGCCGCCGCCGCCGCCGCCGGCGCCGGCGACGGGGCCGACGA 1020
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CCTGCAGAACACGCTCCGCCTCACCCGCGACAACATCAAGGCCATCATCATGGACGTGAT 1080
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GTTCGGGGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATGCA 1140
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CAGCCCCGACGACCTCCGCCGCGTGCAGGAGGAGCTCGCCGCCGTGGTGGGCCTCGGCCG 1200
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GGACGTCGCCGAGTCCGACCTCGACAAGCTCCCCTTCCTCCGCTGCGTCATCAAGGAGAC 1260
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      GCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCCGCCGACTGCCTCGT 1320
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CGCCGGCTACTCCGTCCCCAGGGGCTCCCGCGTCATGGTCAACGTGTGGGCCATCGCCCG 1380
consensus_12886#1      ------------------------------------------------------------
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      CGACCGCGCCGCCTGGGGCCCCGACGCCGACGCGTTCCGCCCCTCGCGGTTCGCCGC-CG 1439
consensus_12886#1      ----------AATTAGGAGGGTGAAAACAAGGTATACCATA---------TAGGTAT-TT 40
consensus_12886#2      -------------------------------------------------TTTGATATATT 11
                                                                         * *       

consensus_12886#0      GCGCCGCCGCCGAGGGGCTCGACTTCAGGGGCGGCTGCTTCGAGTTCCTCCCCTTCGGCT 1499
consensus_12886#1      AGGGAACCACATAAGG---TGTATTTTGGAGTGA--AATTTAGGTT--TTACTTTTGA-- 91
consensus_12886#2      ATAGAATTGAAAACAA----AATTTTCATAGCAAATACTTGTTGTAG-TTAGATTTACC- 65
                                   *          **     *       **   **   *    **     

consensus_12886#0      CCGGCCGCCGCTCGTGCCCGGGCATGGCGCTGGGGCTCTACGCGCTCGAGCT--CGCCGT 1557
consensus_12886#1      -TAAGCATCGAT-GTGTACTGGGAAGGT-TAGTGGATATACGGG--AGAGAT--TGGAGT 144
consensus_12886#2      -CGAGCATCGTAAATTTTCTAGTCTCTGCCACTGATTAGAAATGGAGGGAATAATAAGTA 124
                            *  **    *   *  *           *  *  *   *   *   *        

consensus_12886#0      CGCGCGGCTCGCCCACGGCTTCAACTGGTCGCTCCCCGACGGGATGAAGCCGTCCGAGCT 1617
consensus_12886#1      AGCGAGGTTTGCCAAGGGTTTTAATTGGTAGCTCCCGAACGGAATTAAGCGGTCCGAGCT 204
consensus_12886#2      AACAACAAGTAGTGTGAGTAATAAGCAAAGGTGATGACGTGGCATGCAGGACGTGATGTT 184
                         *              *    **      *         ** **  **        * *

consensus_12886#0      CGACATGTCCGACATCTTCGGCCTCACCGCGCCGCGCGCCACCCGCCTTTCCGCCGTCGC 1677
consensus_12886#1      TAACATGTCAGAAATTTTAGGCTTCACCGCGCGGCGCGCCACCCGCTTTTCCGCTGTCGC 264
consensus_12886#2      CGGGGGGACGGAGACGGT-GGCGTCGGCGATCGAGTGGGCGATGGCGGAGATGATG---- 239
                             * * ** *   * *** **  **  *     * *    **      *  *    

consensus_12886#0      CACGCCCCGGCTCACCTGCCCCTTGTACTGACGGCGGCCGGCGACCGCGGCGGCGTACGG 1737
consensus_12886#1      CACGCCCAGGCTCACCTGCCCCTTGTAATGACGGCGGCCGGCGACCGCGGCGGCGTACGG 324
consensus_12886#2      CACAGCCCCGACGACCTCCGCCGCGTGCAGGAGG-AGCTCGCCGCCGTGGTGGGCCTCGG 298
                       ***  **  *   **** * **  **   *  **  **  **  *** ** **    ***

consensus_12886#0      CAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGA 1797
consensus_12886#1      CAAGAATGGTTTGCAGGTGATGGTGTTAAAAGTTCAGACGCGTGTGGCGCCATTGGAGGA 384
consensus_12886#2      CCGGGACG--TCGCCGAGTCCGACCTCGA-----CAAGCTCCCCTTCCTCCGCTGCGTCA 351
                       *  * * *  * ** *     *   *  *     **  * *   *  * **  **    *

consensus_12886#0      GCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTGCTGGTTTAATTTTCT 1857
consensus_12886#1      GCTTGGTGTGGCTAGCTTAGCTTCCTCTGGGCCTTTTTTTTTTTGCTGGTTTAATTTTCT 444
consensus_12886#2      --TCAAGGAGAC--GCTCCGCCTCCACCCGCCCATCCCCATCCTCCTCCACGAGACCGCC 407
                         *    * * *  ***  ** *** *  * ** *     *  * **     *     * 

consensus_12886#0      TTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGT 1917
consensus_12886#1      TTTTTTTTCTCCTTTGTAATTTAATCCATGTCTCCAGAACAATAAGTGGATTAGTAGGGT 504
consensus_12886#2      GCCGACTGCCTCGTCGCCGGCTACTCC--GTCCCCAGGGGCTCCCGCGT-----CATGGT 460
                             * *  * * *     ** ***  *** ****        * *       * ***

consensus_12886#0      ATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTC 1977
consensus_12886#1      ATAATTAAGGGTGACAGTGTGATATATAGACTATAAGATCAAAGTTGTAAATTTGGTGTC 564
consensus_12886#2      CAACGTGTGGGCCATCGCCCGC-------------------------------------- 482
                         *  *  ***  *  *   *                                       

consensus_12886#0      CGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTTGTCATGAAA 2037
consensus_12886#1      CGGTGTGCCTGTCCACATAAGCACAGCCTCTGAATTTTCTTGTAAAACTTGGTCATGAAA 624
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      ATTGAGAAAGAAAACACC------------------------------------------ 2055
consensus_12886#1      ATTGAGAAAGAAAACACCTCGCTTTCCACGCGTACGCTTAAAAAAAAAAAAAAAAAAAAC 684
consensus_12886#2      ------------------------------------------------------------
                                                                                   

consensus_12886#0      ------
consensus_12886#1      TCGAGA 690
consensus_12886#2      ------