These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1040 fasta sequence [GCAGTACTAGATCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGGGACTGTCGACGTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGTCAAGATTGAATCAGTTGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAGAACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103013 [GCAGTACTAGATCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGGGACTGTCGACGTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGTCAAGATTGAATCAGTTGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAGAACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATT ] [+] EMBL AU160905 [ CAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTNACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAACAAAAAAAAAAAAAA ] [+] EMBL AU088562 [ cnGAAGGGATGGATNACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGNCCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGNGGTTCGTCNCCNCGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTANCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGNGTTTTCTCNCTGTTTGTTGTGATGTTNTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754926 [ AGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_12887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 672 fasta sequence [CAGCGTGANTTANGANTCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGG-GACTGTCGACGTCGGGAAGCTCTATGAGCGC-CTCAAGAAAAT-GTCATCCAGTGTCAAGA-TTG-AATCAGTTGTGCCGGATGATCTAATGGCG-AAAAT-GGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAG-AACAACG-AAATGGAAGAGNG-C-AAG--AAT-TC-ACTCAAGTCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGGTTTTTGTCTGTTGCTAAACACTTGATTTGGACTGA] [+] EMBL C27623 [CAGCGTGANTTANGANTCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGG GACTGTCGACGTCGGGAAGCTCTATGA CGCACTCAAGAAAAT GTCATCCAGTGTCAAGA TTG AATCAGTTGTGCCGGATGATCTAATGGCG AAAAT GGATCGATACAAAAAGGACCTTCAGAACATGAAGANACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAGAAACAACG ATATGGAAGAn ] [+] EMBL C28530 [ TCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGAAGGTGGACGTGCCAGG GACTGTCGACGTCGNGAAGCTCTATGAGCGC CTCAAGAAAAT GTCATCCAGTGTCAAGA TTG AATCAGTTGTGCCGGATGATCTAATGGCG AAAAT GGATCGATACAAAAAGG CCTTCAG ACATG AG AACAGNAGGAAG TGTCGAG CAAAG AAATC AACANGAGG AGG T CAAG TTCT CA NAAG AC ACG AATGG AG GNG C AAG AAT TC ACTCAAGTC ] [+] EMBL OSC100761 [ GTCTCTGACTTCCTCCCCATCTCTTTTCACCATATATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACGACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGNTAATTTCAAAGTAAAAGTAGATGGCAGCAGTTTGNAGGTGGACGTTCCAGGNGACTNTCGACGTCGGGAAGCTCTATGAGCGC CTCAAGNAAATNGTCATCCAGTGTCAAGATTTGNAATCAGTTNTGCCGGATGATCTAATGGCGAAAAATGGGATCGAT ] [+] EMBL CF308388 [ CTATGAGCGC CTCAAGAAAAT GTCATCCAGTGTCAAGA TTG AATCAGTTGTGCCGGATGATCTAATGGCG AAAAT GGATCGATACAAAAAGGACCTTCAGAACATGAAGAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCTCCAGCAAG AACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAAAAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGAATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAACAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGGTTTTTGTCTGTTGCTAAACACTTGATTTGGACTGA] consensusID : consensus_12887#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 542 fasta sequence [ACCGGATTTCAGGAATCTTGGTGGTGTTTCGCACGGAATTATTTAAAATTTTGAAAGAAACTTGAAAATCTTGGACCATATATTAGCTTGCTGGGATTCGGAAATTACCAAAATTTCAAACCCTGATATAATTTTCGGCAATCGTGCGGCTGATTTTTGGTCTGCGTTTTAACTGCAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAA] [-] EMBL CF308389 [ACCGGATTTCAGGAATCTTGGTGGTGTTTCGCACGGAATTATTTAAAATTTTGAAAGAAACTTGAAAATCTTGGACCATATATTAGCTTGCTGGGATTCGGAAATTACCAAAATTTCAAACCCTGATATAATTTTCGGCAATCGTGCGGCTGATTTTTGGTCTGCGTTTTAACTGCAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCATCACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCACCACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAA] [+] EMBL CF309095 [ GCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAA ] [-] EMBL CF309094 [ CACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTGCTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12887#0 -----GCAGTACTAGATCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATA 55 consensus_12887#1 CAGCGTGANTTANGANTCTTGCTCTAGTCTCTGACTTCCTCCCCATCTCTTTTCACCATA 60 consensus_12887#2 -ACCGGATTTCAGGAATCTTGGTGGTGTTTCGCACGGAATT---ATTTAAAATTTTGAAA 56 * ***** * ** ** ** * ** * * * * consensus_12887#0 TATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACG 115 consensus_12887#1 TATATCTGAAGCAAATGGGAGACAAGAAACTTACGAAGCTCAAGGTTCGGGGTGCAAACG 120 consensus_12887#2 GAAACTTGAA---AATCTTGGACCATATA-TTAGCTTGCTGGGATTCGGAAATTACCAAA 112 * * **** *** *** * * * *** *** * * * * consensus_12887#0 ACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATT 175 consensus_12887#1 ACGTAGAGGTCAAGAGCGTACTTCGTCAAGAGTTCAAAGAATCTGTCGACCAGGATAATT 180 consensus_12887#2 ATTTCAAACCCTGATATAATTTTCGGCAATCGTGCGGCTGATTT-TTGGTCTGCGT--TT 169 * * * * **** *** ** * ** * * * * * * ** consensus_12887#0 TCAAAGTAAAAGTAGATGGCAGCAGTTTGAA----GGTGGACGTGCCAGGGACTGTCGAC 231 consensus_12887#1 TCAAAGTAAAAGTAGATGGCAGCAGTTTGAA----GGTGGACGTGCCAGGGACTGTCGAC 236 consensus_12887#2 TAACTGCAGGGATGGATAACTACAACTTCAACTAAGTTGGACAGTTTCGAATCTGTGGAC 229 * * * * * *** * ** ** ** * ***** * **** *** consensus_12887#0 GTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGT-CAAGATTGAATCAGT 290 consensus_12887#1 GTCGGGAAGCTCTATGAGCGCCTCAAGAAAATGTCATCCAGTGT-CAAGATTGAATCAGT 295 consensus_12887#2 CATAATCATCATGGTATGCATCACA-GAGTGCATAAGGAGGTGCACAGGCATGAATTTCA 288 * * * ** * ** ** * * *** ** * ***** consensus_12887#0 TGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAA 350 consensus_12887#1 TGTGCCGGATGATCTAATGGCGAAAATGGATCGATACAAAAAGGACCTTCAGAACATGAA 355 consensus_12887#2 CATGCATCAAGAGGT--TCGTCACCACGG--TAATGTGATGG----CATTGGAGAATGAT 340 *** * ** * * * * * ** ** * * * ** **** consensus_12887#0 GAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCT 410 consensus_12887#1 GAAACAGAAGGAAGCTGTCGAGTCAAAGCAAATCAAACAAGAGGAAGGATACAAGCTTCT 415 consensus_12887#2 GGTAGGAGGGCGCACTAACAACCCAGGCTGGAATATTACCACTGAGGAAATTAAATTTAT 400 * * * ** * * ** * * ** * * ** ** * consensus_12887#0 CCAGCAAGAACAACGAAAATGGAAGAGAGACAAAGAAAATCTCAACTCAAAGCTCGAAAA 470 consensus_12887#1 CCAGCAAGAACAACGAAA-TGGAAGAGNG-CAAGAA-----TTCACTCAAGTCTCGAAAA 468 consensus_12887#2 CCTCCTACCAAAACTATA-TACATATGTG-TGCTGACGTGGTTTGTGCTATGTTTGTGTG 458 ** * * * *** * * * * * * * * * * * * consensus_12887#0 AAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGA 530 consensus_12887#1 AAAGACAAAGGAGACCAAAGATGCCAAGGAAGAACTCAAAATCACAAAGAGAGAGAAGGA 528 consensus_12887#2 TGGTTTACTTGCCTTTCTTGGAGTTTTCTCTCTGTTTGTTGTGATGTTCTAGCATAATAA 518 * * * * * * * * ** * consensus_12887#0 ATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAA 590 consensus_12887#1 ATATCTCAACACAAAACTTGAGACAAAGAGGGAAGAGAACAAGCGCCTCGATGAGGAAAA 588 consensus_12887#2 ATAAAGCTGCATTA---TTGAGAAAAA--------------------------------- 542 *** * ** * ****** *** consensus_12887#0 CAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGATGGATAACTAC 650 consensus_12887#1 CAAGAAATTGCAGCGAAAAATCAAGGATCTACAGGAAATGCAGAAGGGGTTTTTGTCTGT 648 consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 AACTT--CAACTAAGTTGGACAGTTTCGAATCTGTGGACCATAATCATCATGGTATGCAT 708 consensus_12887#1 TGCTAAACACTTGATTTGGACTGA------------------------------------ 672 consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 CACAGAGTGCATAAGGAGGTGCACAGGCATGAATTTCACATGCATCAAGAGGTTCGTCAC 768 consensus_12887#1 ------------------------------------------------------------ consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 CACGGTAATGTGATGGCATTGGAGAATGATGGTAGGAGGGCGCACTAACAACCCAGGCTG 828 consensus_12887#1 ------------------------------------------------------------ consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 GAATATTACCACTGAGGAAATTAAATTTATCCTCCTACCAAAACTATATACATATGTGTG 888 consensus_12887#1 ------------------------------------------------------------ consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 CTGACGTGGTTTGTGCTATGTTTGTGTGTGGTTTACTTGCCTTTCTTGGAGTTTTCTCTC 948 consensus_12887#1 ------------------------------------------------------------ consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 TGTTTGTTGTGATGTTCTAGCATAATAAATAAAGCTGCATTATTGAGAAAAAAAAAAAAA 1008 consensus_12887#1 ------------------------------------------------------------ consensus_12887#2 ------------------------------------------------------------ consensus_12887#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1040 consensus_12887#1 -------------------------------- consensus_12887#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||