These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1260 fasta sequence [ACAGCTATCTTTTCCCATTTCTCCCCGCCCCCCCAACCCCACCTCCAATCCCTCTCGTCGTCGAGGCGAGCGCGGGCGCGGGCGCGGGCGGCGAGATGGAAGGGATGGGGCAGCAGAAGAGGCGGCCGCTGGTGGTGATGGCGTCGGCGCAGGCGGCGGCGCGGGGTGGGGCCAACCCGCTCGCGGAGCTGACCGACCGCGTCAAGACCCTGGAGGCCGGCCTGCGGGCGTGGCTGGCGAAGCAGCCCACGCACGTCGAGGCCGCCGTCGCCACCGCCGTCGGGGCCGTGCAGGGCGGCGCCCTCGGCGGGCTGATGGGCACGCTCGCGCCGGACGGCGGGTCGCCGTTCCCCGTGCCGCAGCCGCCGCCCGGGGCCGACCCCAACGCCCTCGCCTCCTTCAAGCAGGCGCAGGCTTTGGCAGGTGGACCACTGGTGCAAGCCCGAAACTTTGCCGTCATGACTGGTGCTAATGCAGGAATATCTTGTGTTATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGCATGGCAGCAGCGTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTGCTAATGCAATTACAACTGGTGTAGCTTTTGCAGTATTTCAA-GGTGGTTTTTTCATGATTGGTCAGAAATTTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGTTGAAACAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTT-AAATCGATT-GCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTT-GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT-CA-TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA-CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB648054 [ACAGCTATCTTTTCCCATTTCTCCCCGCCCCCCCAACCCCACCTCCAATCCCTCTCGTCGTCGAGGCGAGCGCGGGCGCGGGCGCGGGCGGCGAGATGGAAGGGATGGGGCAGCAGAAGAGGCGGCCGCTGGTGGTGATGGCGTCGGCGCAGGCGGCGGCGCGGGGTGGGGCCAACCCGCTCGCGGAGCTGACCGACCGCGTCAAGACCCTGGAGGCCGGCCTGCGGGCGTGGCTGGCGAAGCAGCCCACGCACGTCGAGGCCGCCGTCGCCACCGCCGTCGGGGCCGTGCAGGGCGGCGCCCTCGGCGGGCTGATGGGCACGCTCGCGCCGGACGGCGGGTCGCCGTTCCCCGTGCCGCAGCCGCCGCCCGGGGCCGACCCCAACGCCCTCGCCTCCTTCAAGCAGGCGCAGGCTTTGGCAGGTGGACCACTGGTGCAAGCCCGAAACTTTGCCGTCATGACTGGTGCTAATGCAGGAATATCTTGTGTTATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGCATGGCAGCAGCGTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTGCTAATGCAATTACAACTGGTGTAGCTTTTGCAGTATTTCAA GGTGGTTTTTTCATGATTGGTCAGAAATTTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGTTGAAACAATTAGGGCTTCAGAACTATGAGAAGAAATTCAAGAAGGGTCTTCTTACTGATCAAA ] [-] EMBL CB648055 [ GTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTGCTAATGCAATTACAACTGGGGTAGCTTTTGCAGTATTTCAA GGTGGTTTTTTCATGATTGGTCAGAAATTTTCGCAGCCCCGGAGTGAAGATATATACTATTCCCGTGGGGGAAATATGTTGAACCAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAAGGAAATCAACTT AAATCGATT GCCCCAGCCTGTTGGCACCAGCTTTTCCTCAAGTGGCATAAAATCGTGTTCTT GGAAGTCCAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTGGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTCCCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATAAAGGGCTGAGT ] [-] EMBL CA763614 [ gaCAAGGGGGGTTTTTTCATGATTGGTCAGAAATNTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGTTGAAACAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTT AAATCGATT GCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTGTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTTTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTACTGGGCCTTTTCCAAGTTAAAAAAAAAAAA ] [+] EMBL AU068274 [ GTTAACGAAATCAACTT AAATCGATT GCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAA ] [+] EMBL AU166123 [ AANTCCACTTAAAACCGATTCCCCACACCCTTTTGGCNCCAGCTTTCCCNCAAGTGGCAAAAAATCGGGTTCTTGGGAAGTACAATCTAGCTNTTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATGGCTAATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATNA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU091804 [ TTTCCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTGAANCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAA ] [+] EMBL CF331016 [ TCCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTTAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAA ] [-] EMBL CF331015 [ CCTCAAGTTGCATAAAATCGTGTTCTT GGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGT CA TCAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTA CTAGCTTCCTGTTTTTAGTCTTGAACGGTTTAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGTATGTTATAAGTTAATAATCTATTGGGCCTTTTCCAAGTTAAAAA ] [+] EMBL AU091632 [ AAGATCGCTNATAGACGTTTTTGTAGTCCANAAAAACTATGATAAATTTAGATGGATGATATGCACTGAAGTTACCCTCGAATTACCTAGNTTCCTGTTTTTAGTCTTGANCGGTTGNATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTNCATAAGTTGTGTATGTNATAAGTTNATAATCTATTGGGCCTTTTCCAAGTTAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_12889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGGATGGAGGNTATGGNAAAGCTNGGGNNCCANNGGGGCGTTTCNANCNNNGNTGGGGGNNNNGCGTNGGTGGGNGNGTTGNGNGTTANTGNGNCGNGNGNGGGTTGGTGTGNTNTGGGGNTNGGGTTGTNAGGGNNNNGNTGTGNNG] [+] EMBL OS0891A [GAAGAATTTCAAGAAGGGTCTTCTTACTGATCAAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCAGACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAGCTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGGATGGAGGNTATGGNAAAGCTNGGGNNCCANNGGGGCGTTTCNANCNNNGNTGGGGGNNNNGCGTNGGTGGGNGNGTTGNGNGTTANTGNGNCGNGNGNGGGTTGGTGTGNTNTGGGGNTNGGGTTGTNAGGGNNNNGNTGTGNNG] consensusID : consensus_12889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [ATNCTTTGTATTNANANTGGTCACATACNGCTCNTCCTTGATCACATTCAAAGAGACCTGAGTTGGCGAGTCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGANCTCTTTANGCAGAAGTGTGATTGGAAAAGATAGCTCATANACGTTTNTGTAGTCATCAAACTATGATAAATTTAGATGGGATGATATGCACTGAANTTACCCCCCAAATTACTANCTTCCCNGTTTTTAGTTTTGAACGGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCNAGTCAAGATANAACACTTCCCATAAGTTGGGGTTTGNTTNTAAATTTAATAANCTATTGGGG] [+] EMBL BE228444 [ATNCTTTGTATTNANANTGGTCACATACNGCTCNTCCTTGATCACATTCAAAGAGACCTGAGTTGGCGAGTCAACTTAAATCGATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAAGTACAATCTAGCTATTTCAAGGATGANCTCTTTANGCAGAAGTGTGATTGGAAAAGATAGCTCATANACGTTTNTGTAGTCATCAAACTATGATAAATTTAGATGGGATGATATGCACTGAANTTACCCCCCAAATTACTANCTTCCCNGTTTTTAGTTTTGAACGGGTTGAATCTTATGCTGAGTGGTTGATATTTCCAATTGGGCNAGTCAAGATANAACACTTCCCATAAGTTGGGGTTTGNTTNTAAATTTAATAANCTATTGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12889#0 ACAGCTATCTTTTCCCATTTCTCCCCGCCCCCCCAACCCCACCTCCAATCCCTCTCGTCG 60 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 TCGAGGCGAGCGCGGGCGCGGGCGCGGGCGGCGAGATGGAAGGGATGGGGCAGCAGAAGA 120 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 GGCGGCCGCTGGTGGTGATGGCGTCGGCGCAGGCGGCGGCGCGGGGTGGGGCCAACCCGC 180 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 TCGCGGAGCTGACCGACCGCGTCAAGACCCTGGAGGCCGGCCTGCGGGCGTGGCTGGCGA 240 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 AGCAGCCCACGCACGTCGAGGCCGCCGTCGCCACCGCCGTCGGGGCCGTGCAGGGCGGCG 300 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 CCCTCGGCGGGCTGATGGGCACGCTCGCGCCGGACGGCGGGTCGCCGTTCCCCGTGCCGC 360 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 AGCCGCCGCCCGGGGCCGACCCCAACGCCCTCGCCTCCTTCAAGCAGGCGCAGGCTTTGG 420 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 CAGGTGGACCACTGGTGCAAGCCCGAAACTTTGCCGTCATGACTGGTGCTAATGCAGGAA 480 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 TATCTTGTGTTATGAGAAGGATAAGAGGAGTGGAGGATGTCCAGGGCAGCATGGCAGCAG 540 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 CGTTTGGTTCTGGCGCTTTATTCTCCATTGTGAGTGGAATGGGGTCTCCAAATCCAGTTG 600 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 CTAATGCAATTACAACTGGTGTAGCTTTTGCAGTATTTCAAGGTGGTTTTTTCATGATTG 660 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 GTCAGAAATTTTCGCAGCCACCGAGTGAAGATATATACTATTCCCGTGGGAGAAATATGT 720 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ------------------------------------------------------------ consensus_12889#0 TGAAACAATTAGGGCTTCAGAACTATGAGAAGAATTTCAAGAAGGGTCTTCTTACTGATC 780 consensus_12889#2 ------------------------------------------------------------ consensus_12889#1 ----------------------------GAAGAATTTCAAGAAGGGTCTTCTTACTGATC 32 consensus_12889#0 AAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCA 840 consensus_12889#2 -----------------------------------ATNCTTTGTATTNANANTGGTCACA 25 consensus_12889#1 AAACATTGCCCCTACTCAATGACAGTGCACTTAGAGATGTGAAGATCCCCCCTGGTCCCA 92 * ** ***** ** consensus_12889#0 GACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCG 900 consensus_12889#2 TACNGCTCNTCCTTGATCACATTCAAAGAGACC-TGAGTTGGCGAG-TCAACTTAAATCG 83 consensus_12889#1 GACTTCTCATCCTTGATCACATTCAAAGAGACCCTGAGTTAACGAAATCAACTTAAATCG 152 ** *** ************************ ****** *** ************* consensus_12889#0 ATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAA 960 consensus_12889#2 ATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAA 143 consensus_12889#1 ATTGCCACAGCCTGTTGGCACCAGCTTTTCCTCAAGTTGCATAAAATCGTGTTCTTGGAA 212 ************************************************************ consensus_12889#0 GTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAG 1020 consensus_12889#2 GTACAATCTAGCTATTTCAAGGATGANCTCTTTANGCAGAAGTGTGATTGGAAAAGATAG 203 consensus_12889#1 GTACAATCTAGCTATTTCAAGGATGAGCTCTTTAGGCAGAAGTGTGATTGGAAAAGATAG 272 ************************** ******* ************************* consensus_12889#0 CTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGATGG-ATGATATGCACTG 1079 consensus_12889#2 CTCATANACGTTTNTGTAGTCATCAAACTATGATAAATTTAGATGGGATGATATGCACTG 263 consensus_12889#1 CTCATAGACGTTTTTGTAGTCATCAAACTATGATAAATTTAGGATGGAGGNTATG----G 328 ****** ****** **************************** * * * **** * consensus_12889#0 AAGTTACCCTC-GAATTACTAGCTTCC-TGTTTTTAGTCTTGAACGG-TTGAATCTTATG 1136 consensus_12889#2 AANTTACCCCCCAAATTACTANCTTCCCNGTTTTTAGTTTTGAACGGGTTGAATCTTATG 323 consensus_12889#1 NAA--AGCTNGGGNNCCANNGGGG----CGTTTCNANCNNNGNTGGGGGNNNNGCGTNGG 382 * * * * **** * * ** * * * consensus_12889#0 CTGAGTGGTTGATATTTCCAATTGGGCAAGTCAAGATAGAACACTTTCCATAAGTTGTGT 1196 consensus_12889#2 CTGAGTGGTTGATATTTCCAATTGGGCNAGTCAAGATANAACACTTCCCATAAGTTGGGG 383 consensus_12889#1 TGGGNGNGTTGNGNGTT---ANTGNGNCGNGNGNGGGTTGGTGTGNTNTG-GGGNTNGGG 438 * **** ** * ** * * * * * consensus_12889#0 AT--GTTATAAGTT-AATAATCTATTGGGCCTTTTCCAAGTTAAAAAAAAAAAAAAAAAA 1253 consensus_12889#2 TTTGNTTNTAAATTTAATAANCTATTGGGG------------------------------ 413 consensus_12889#1 TT--GTNAGGGNNNNGNTGTGNNG------------------------------------ 460 * * * consensus_12889#0 AAAAAAA 1260 consensus_12889#2 ------- consensus_12889#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||