These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2727 fasta sequence [TACCAATATCTGCTTTCTCTCTTGTTTTACATACTGGACTGTACTGATCGGTTCTCAGTAATAGTTACTATTCACAATCACAGGGTCGGCGTACTGATGATTGTGCTTTTGCAGGACCAATGGAAAAGTTATTGCAGAACTATCTCTCTGCTAGCATTTCAGAGCTTTGGTGTGGTCTATGGAGACTTGAGTACATCACCCCTGTACGTCTACAAAAGTGCATTTTCTGGGAGGCTGAATAATTACCGTGATGAGACAACCATATTTGGATTGTTTTCGCTGATATTTTGGACTTTGACACTTCTTCCGTTGCTGAAGTATGTAATAATTGTATTGAACGCAGATGATAATGGGGAAGGTGGAACATTTGCTTTATACTCACTTCTCTGCAGGCATGCAAAGTTCAGCCTGCTTCCAAACCAGCAATCGGCAGACGAAGAGCTTTCAACGTACTATCAGCCTGGAGTTGGTGGCATTATTTCCTCTCCACTCAAAAGATTCCTGGAGAAGCACAGGAAGCTACGGACTTGTTTACTACTTTTTGTTCTGTTTGGCGCATGCATGGTGATAGGTGATGGTGTTTTCACACCTGCTATCTCTGTCTTGTCAGCCATCTCTGGTTTAAAAGACCCTGGCCCAGGAGGAATACCAGATGGTTGGGTGGTGTTCATTGCATGTATTGTGCTTGTTGGCCTGTTTGCACTGCAACACCGAGGAACTCATAGGGTAGCATTTATGTTTGCGCCCATTGTTGTAGTATGGCTGTTGAGTATTGGTGTTATTGGGCTTTATAATATCATCCACTGGAACCACAGAATATTTCTTGCTCTTTCTCCACATTATGTTATAAAGTTCTTCAAGATGACAGGAAAAGATGGTTGGCTTTCTCTTGGAGGAGTACTTCTTGCTATAACAGGTACTGAAGCTATGTTTGCTGATCTTGGCCACTTCACTGCTGCATCTATTAGGTTGGCTTTTGTTGGTGCCATATATCCCTGTCTTGTGCTGCAATACATGGGGCAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTTTTACCAATCTGTACCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGCCAGTCTATCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTTCCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCACTACGGCTCTCGGAGGAAGTACCTGTTTGATCTCCAGAACAAGGTCTCAATGAAATGGATCCTGACACTTGGTCCGAGCCTTGGGATCGTTCGGGTGCCTGGAATCGGTCTCATCTACACAGAGCTGGTCACCGGGGTGCCTTCCATCTTCTCGCACTTTGTCACCAACCTGCCTGCTTTCCATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCTGTGCCGTTCGTTCCAGAGGACGAACGGTACCTCATTGGACGGATCGGCCCCAGGGAATACCGTATGTACCGGTGCATCGTGAGGTATGGCTACAAAGATGTGCAGAAAGATGACGAGAACTTTGAGAACCACTTGGTGATGAGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAATCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCGGTCTGGTGATGAGGGACTCCAATAACGAGGCTTCAGGCACGTCCCTGACAAGGAGCAGCAGGTCGGAGACGCTCCGGAGCCTCCAGTCCATCTACGAGCAGGAGTCCGGTAGTCTCAGCCGGCGTCGCAGAGTCCGTTTTGAGATTGCGGAGGAGGAGCGGATCGACCCCCAGGTGCGGGACGAGCTGGCTGATCTCCTGGACGCCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTAC-TATGTCTAAATCGATTTTTCTGATCATGCTTGCCGTACTACCCAGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGTCATTTTGTTTGCTCTTTTATACATGTAATGTAGTTGCCGAGTTACCATGTGATGTAAAGATGCTGGCAGAACTAGCTTTAGCTGCTACCATCTGAACTCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGTTAAAATGTTCAATGATAGCACATAACATGGCAATAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTA] [+] EMBL OSA427971 [TACCAATATCTGCTTTCTCTCTTGTTTTACATACTGGACTGTACTGATCGGTTCTCAGTAATAGTTACTATTCACAATCACAGGGTCGGCGTACTGATGATTGTGCTTTTGCAGGACCAATGGAAAAGTTATTGCAGAACTATCTCTCTGCTAGCATTTCAGAGCTTTGGTGTGGTCTATGGAGACTTGAGTACATCACCCCTGTACGTCTACAAAAGTGCATTTTCTGGGAGGCTGAATAATTACCGTGATGAGACAACCATATTTGGATTGTTTTCGCTGATATTTTGGACTTTGACACTTCTTCCGTTGCTGAAGTATGTAATAATTGTATTGAACGCAGATGATAATGGGGAAGGTGGAACATTTGCTTTATACTCACTTCTCTGCAGGCATGCAAAGTTCAGCCTGCTTCCAAACCAGCAATCGGCAGACGAAGAGCTTTCAACGTACTATCAGCCTGGAGTTGGTGGCATTATTTCCTCTCCACTCAAAAGATTCCTGGAGAAGCACAGGAAGCTACGGACTTGTTTACTACTTTTTGTTCTGTTTGGCGCATGCATGGTGATAGGTGATGGTGTTTTCACACCTGCTATCTCTGTCTTGTCAGCCATCTCTGGTTTAAAAGACCCTGGCCCAGGAGGAATACCAGATGGTTGGGTGGTGTTCATTGCATGTATTGTGCTTGTTGGCCTGTTTGCACTGCAACACCGAGGAACTCATAGGGTAGCATTTATGTTTGCGCCCATTGTTGTAGTATGGCTGTTGAGTATTGGTGTTATTGGGCTTTATAATATCATCCACTGGAACCACAGAATATTTCTTGCTCTTTCTCCACATTATGTTATAAAGTTCTTCAAGATGACAGGAAAAGATGGTTGGCTTTCTCTTGGAGGAGTACTTCTTGCTATAACAGGTACTGAAGCTATGTTTGCTGATCTTGGCCACTTCACTGCTGCATCTATTAGGTTGGCTTTTGTTGGTGCCATATATCCCTGTCTTGTGCTGCAATACATGGGGCAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTTTTACCAATCTGTACCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGCCAGTCTATCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTTCCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCACTACGGCTCTCGGAGGAAGTACCTGTTTGATCTCCAGAACAAGGTCTCAATGAAATGGATCCTGACACTTGGTCCGAGCCTTGGGATCGTTCGGGTGCCTGGAATCGGTCTCATCTACACAGAGCTGGTCACCGGGGTGCCTTCCATCTTCTCGCACTTTGTCACCAACCTGCCTGCTTTCCATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCTGTGCCGTTCGTTCCAGAGGACGAACGGTACCTCATTGGACGGATCGGCCCCAGGGAATACCGTATGTACCGGTGCATCGTGAGGTATGGCTACAAAGATGTGCAGAAAGATGACGAGAACTTTGAGAACCACTTGGTGATGAGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAATCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCGGTCTGGTGATGAGGGACTCCAATAACGAGGCTTCAGGCACGTCCCTGACAAGGAGCAGCAGGTCGGAGACGCTCCGGAGCCTCCAGTCCATCTACGAGCAGGAGTCCGGTAGTCTCAGCCGGCGTCGCAGAGTCCGTTTTGAGATTGCGGAGGAGGAGCGGATCGACCCCCAGGTGCGGGACGAGCTGGCTGATCTCCTGGACGCCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTA ] [+] EMBL CA756222 [ TGTCTTTCTTTGGGATGTTTTCCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCACTACGGCTCTCGGAGGAAGTACCTGTTTGATCTCCAGAACAAGGTCTCAATGAAATGGATCCTGACACTTGGTCCGAGCCTTGNGATCGTTCGGGTGCCTGGAATCGGTCTCATCTACACAGAGCTGGTCACCGGGGTGCCTTCCATCTTCTCGCACTTTGTCACCAACCTGCCTGCTTTCCATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCT ] [+] EMBL CB679193 [ ACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCACTACGGCTCTCGGAGGAAGTACCTGTTTGATCTCCAGAACAAGGTCTCAATGAAATGGATCCTGACACTTGGTCCGAGCCTTGGGATCGTTCGGGTGCCTGGAATCGGTCTCATCTACACAGAGCTGGTCACCGGGGTGCCTTCCATCTTCTCGCACTTTGTCACCAACCTGCCTGCTTTCCATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCTGTGCCGTTCGTTCCAGAGGACGAACGGTACCTCATTGGACGGATCGGCCCCAGGGAATACCGTATGTACCGGTGCATCGTGAGGTATGGCTACAAAGATGTGCAGAAAGATGACGAGAACTTTGAGAACCACTTGGTGATGAGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAATCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCG ] [+] EMBL AK059797 [ GACACTTGGTCCGAGCCTTGGGATCGTTCGGGTGCCTGGAATCGGTCTCATCTACACAGAGCTGGTCACCGGGGTGCCTTCCATCTTCTCGCACTTTGTCACCAACCTGCCTGCTTTCCATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCTGTGCCGTTCGTTCCAGAGGACGAACGGTACCTCATTGGACGGATCGGCCCCAGGGAATACCGTATGTACCGGTGCATCGTGAGGTATGGCTACAAAGATGTGCAGAAAGATGACGAGAACTTTGAGAACCACTTGGTGATGAGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAATCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCGGTCTGGTGATGAGGGACTCCAATAACGAGGCTTCAGGCACGTCCCTGACAAGGAGCAGCAGGTCGGAGACGCTCCGGAGCCTCCAGTCCATCTACGAGCAGGAGTCCGGTAGTCTCAGCCGGCGTCGCAGAGTCCGTTTTGAGATTGCGGAGGAGGAGCGGATCGACCCCCAGGTGCGGGACGAGCTGGCTGATCTCCTGGACGCCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTAC TATGTCTAAATCGATTTTTCTGATCATGCTTGCCGTACTACCCAGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGTCATTTTGTTTGCTCTTTTATACATGTAATGTAGTTGCCGAGTTACCATGTGATGTAAAGATGCTGGCAGAACTAGCTTTAGCTGCTACCATCTGAACTCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGT ] [+] EMBL CF308748 [ ACCTGCCTGCTTTCCATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCTGTGCCGTTCGTTCCAGAGGACGAACGGTACCTCATTGGACGGATCGGCCCCAGGGAATACCGTATGTACCGGTGCATCGTGAGGTATGGCTACAAAGATGTGCAGAAAGATGACGGGAACTTTGAGAACCACTTGGTGATGAGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAATCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCGGTCTGGTGATGAGGGACTCCAATAACGAGGCTTCAGGCACGTCCCTGACAAGGAGCAGCAGGTCGGAGACGCTCCGGAGCCTCCAGTCCATCTACGAGCAGGAGTCCGGTAGTCTCAGCCGGCGTCGCAGAGTCCGTTTT ] [-] EMBL CB653377 [ GGTATGGCTACAAAGATGTGCAGAAAGATGACGAGAACTTTGAGAACCACTGNGTGATGAGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAATCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCGGTCTGGTGATGAGGGACTCCAATAACGAGGCTTCAGGCACGTCCCTGACAAGGAGCAGCAGGTCGGAGACGCTCCGGAGCCTCCAGTCCATCTACGAGCAGGAGTCCGGTAGTCTCAGCCGGCGTCGCAGAGTCCGTTTTGAGATTGCGGAGGAGGAGCGGATCGACCCCCAGGTGCGGGACGAGCTGGCTGATCTCCTGGACGCCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTAC TATGTCTAAATCGATTTTTCTGATCATGCTTGCCGTACTACCCAGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGTCATTTTGTTTGCTCTTTTATACATGTAATGTAGTTGCCGAGTTACCATGTGATGTAAAGATGCTGGCAGAACTAGCTTTAGCTGCTACCATCTGAACTCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGTTAAAATGTTCAATGAT ] [-] EMBL CF308749 [ TTTGAGATTGCGGAGGAGGAGCGGATCGACCCCCAGGTGCGGGACGAGCTGGCTGATCTCCTGGACGCCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTAC TATGTCTAAATCGATTTTTCTGATCATGCTTGCCGTACTACCCAGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGTCATTTTGTTTGCTCTTTTAANCATGAAATGTAGTTGCCGAGTTACCATGTGATGTAAAGATGCTGGCAGAACTAGCTTTAGCTGCTACCATCTGAACTCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGTTAAAATGTTCAATGATAGCACATAACATGGCAATAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTA] [+] EMBL CB000477 [ CCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTAC TATGTCTAAATCGATTTTTCTGATCATGCTTGCCGTACTACCCAGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGTCATTTTGTTTGCTCTTTTATACATGTAATGTAGTTGCCGAGTTACCATGTGATGTAAAGATGCTGGCAGAACTAGCTTTAGCTGCTACCATCTGAACTCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGTTAAAAaaaa ] [+] EMBL BM420228 [ GCGTGACTTACATCATCGGCCACTCCTACGTGAAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGAGTACGCTTACTCGTTCCTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTCGAAGTCGGCATGATCTACATATGTCTAAATCGATTTTTCTGATCANGCTNGCCGTACTACCCCGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGTCATTTTGTTTGCTCTTTTAAACATGTAATGTAGTTGCCGAGTTACCATGTGATGTAAAGATGCTGGCAGAACTAGCTTTAGCTGCTACCATNTGAACTCCGGGGCTTCGGTGATCTTGTGAATACATCCCGTTCAACTGTTAAAATGTTCAAaaaaaaaa ] consensusID : consensus_12893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1660 fasta sequence [CACCCCCTCCTCCTCGTCGTCGTCGTCGTCGTGGTCTCTCCTGCTCCGGCGAGGCGACCCCACGGCCGCCAAGGCGCGGGTTAGCTGATTTGGTTTTGATTTGATCTGATTTGATCTGGGGCTGCTTGCTTCGCGGTGCAGCCCGTCGTCACGGTGGGTGGGGGGGGGGGAGCGCAATGGACGCAGAGACCGGCCCGGCCGCGCCGCAGGACCAATGGAAAAGTTATTGCAGAACTATCTCTCTGCTAGCATTTCAGAGCTTTGGTGTGGTCTATGGAGACTTGAGTACATCACCCCTGTACGTCTACAAAAGTGCATTTTCTGGGAGGCTGAATAATTACCGTGATGAGACAACCATATTTGGATTGTTTTCGCTGATATTTTGGACTTTGACACTTCTTCCGTTGCTGAAGTATGTAATAATTGTATTGAACGCAGATGATAATGGGGGAGGTGGAACATTTGCTTTATACTCACTTCTCTGCAGGCATGCAAAGTTCAGCCTGCTTCCAAACCAGCAATCGGCAGACGAAGAGCTTTCAACGTACTATCAGCCTGGAGTTGGTGGCATTATTTCCTCTCCACTCAAAAGATTCCTGGAGAAGCACAGGAAGCTACGGACTTGTTTACTACTTTTTGTTCTGTTTGGCGCATGCATGGTGATAGGTGATGGTGTTTTCACACCTGCTATCTCTGTCTTGTCAGCCATCTCTGGTTTAAAAGACCCTGGCCCAGGAGGAATACCAGATGGTTGGGTGGTGTTCATTGCATGTATTGTGCTTGTTGGCCTGTTTGCACTGCAACACCGAGGAACTCATAGGGTAGCATTTATGTTTGCGCCCATTGTTGTAGTATGGCTGTTGAGTATTGGTGTTATTGGGCTTTATAATATCATCCACTGGAACCACAGAATATTTCTTGCTCTTTCTCCACATTATGTTATAAAGTTCTTCAAGATGACAGGAAAAGATGGTTGGCTTTCTCTTGGAGGAGTACTTCTTGCTATAACAGGTACTGAAGCTATGTTTGCTGATCTTGGCCACTTCACTGCTGCATCTATTAGGTTGGCTTTTGTTGGTGCCATATATCCCTGTCTTGTGCTGCAATACATGGGGCAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTTTTACCAATCTGTACCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGCCAGTCTATCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTTCCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCACTACGG] [+] EMBL AK100652 [CACCCCCTCCTCCTCGTCGTCGTCGTCGTCGTGGTCTCTCCTGCTCCGGCGAGGCGACCCCACGGCCGCCAAGGCGCGGGTTAGCTGATTTGGTTTTGATTTGATCTGATTTGATCTGGGGCTGCTTGCTTCGCGGTGCAGCCCGTCGTCACGGTGGGTGGGGGGGGGGGAGCGCAATGGACGCAGAGACCGGCCCGGCCGCGCCGCAGGACCAATGGAAAAGTTATTGCAGAACTATCTCTCTGCTAGCATTTCAGAGCTTTGGTGTGGTCTATGGAGACTTGAGTACATCACCCCTGTACGTCTACAAAAGTGCATTTTCTGGGAGGCTGAATAATTACCGTGATGAGACAACCATATTTGGATTGTTTTCGCTGATATTTTGGACTTTGACACTTCTTCCGTTGCTGAAGTATGTAATAATTGTATTGAACGCAGATGATAATGGGGGAGGTGGAACATTTGCTTTATACTCACTTCTCTGCAGGCATGCAAAGTTCAGCCTGCTTCCAAACCAGCAATCGGCAGACGAAGAGCTTTCAACGTACTATCAGCCTGGAGTTGGTGGCATTATTTCCTCTCCACTCAAAAGATTCCTGGAGAAGCACAGGAAGCTACGGACTTGTTTACTACTTTTTGTTCTGTTTGGCGCATGCATGGTGATAGGTGATGGTGTTTTCACACCTGCTATCTCTGTCTTGTCAGCCATCTCTGGTTTAAAAGACCCTGGCCCAGGAGGAATACCAGATGGTTGGGTGGTGTTCATTGCATGTATTGTGCTTGTTGGCCTGTTTGCACTGCAACACCGAGGAACTCATAGGGTAGCATTTATGTTTGCGCCCATTGTTGTAGTATGGCTGTTGAGTATTGGTGTTATTGGGCTTTATAATATCATCCACTGGAACCACAGAATATTTCTTGCTCTTTCTCCACATTATGTTATAAAGTTCTTCAAGATGACAGGAAAAGATGGTTGGCTTTCTCTTGGAGGAGTACTTCTTGCTATAACAGGTACTGAAGCTATGTTTGCTGATCTTGGCCACTTCACTGCTGCATCTATTAGGTTGGCTTTTGTTGGTGCCATATATCCCTGTCTTGTGCTGCAATACATGGGGCAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTTTTACCAATCTGTACCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGCCAGTCTATCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTTCCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAGATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACAGTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTGATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTCGTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAGGGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCACTACGG] consensusID : consensus_12893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence [TCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGTTAAAATGTTCTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF298491 [TCCGGGGCTTCGGTGATCTTGTGAATACATCCAGTTCAACTGTTAAAATGTTCTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12893#0 TACCAATATCTGCTTTCTCTCTTGTTTTACATACTGGACTGTACTGATCGGTTCTCAGTA 60 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 ATAGTTACTATTCACAATCACAGGGTCGGCGTACTGATGATTGTGCTTTTGCAGGACCAA 120 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TGGAAAAGTTATTGCAGAACTATCTCTCTGCTAGCATTTCAGAGCTTTGGTGTGGTCTAT 180 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GGAGACTTGAGTACATCACCCCTGTACGTCTACAAAAGTGCATTTTCTGGGAGGCTGAAT 240 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 AATTACCGTGATGAGACAACCATATTTGGATTGTTTTCGCTGATATTTTGGACTTTGACA 300 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CTTCTTCCGTTGCTGAAGTATGTAATAATTGTATTGAACGCAGATGATAATGGGGAAGGT 360 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GGAACATTTGCTTTATACTCACTTCTCTGCAGGCATGCAAAGTTCAGCCTGCTTCCAAAC 420 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CAGCAATCGGCAGACGAAGAGCTTTCAACGTACTATCAGCCTGGAGTTGGTGGCATTATT 480 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TCCTCTCCACTCAAAAGATTCCTGGAGAAGCACAGGAAGCTACGGACTTGTTTACTACTT 540 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TTTGTTCTGTTTGGCGCATGCATGGTGATAGGTGATGGTGTTTTCACACCTGCTATCTCT 600 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GTCTTGTCAGCCATCTCTGGTTTAAAAGACCCTGGCCCAGGAGGAATACCAGATGGTTGG 660 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GTGGTGTTCATTGCATGTATTGTGCTTGTTGGCCTGTTTGCACTGCAACACCGAGGAACT 720 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CATAGGGTAGCATTTATGTTTGCGCCCATTGTTGTAGTATGGCTGTTGAGTATTGGTGTT 780 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 ATTGGGCTTTATAATATCATCCACTGGAACCACAGAATATTTCTTGCTCTTTCTCCACAT 840 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TATGTTATAAAGTTCTTCAAGATGACAGGAAAAGATGGTTGGCTTTCTCTTGGAGGAGTA 900 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CTTCTTGCTATAACAGGTACTGAAGCTATGTTTGCTGATCTTGGCCACTTCACTGCTGCA 960 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TCTATTAGGTTGGCTTTTGTTGGTGCCATATATCCCTGTCTTGTGCTGCAATACATGGGG 1020 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTTTTACCAATCTGTA 1080 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGC 1140 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CAGTCTATCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTT 1200 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAG 1260 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 ATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACA 1320 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTG 1380 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 ATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTC 1440 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAG 1500 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCAC 1560 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TACGGCTCTCGGAGGAAGTACCTGTTTGATCTCCAGAACAAGGTCTCAATGAAATGGATC 1620 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CTGACACTTGGTCCGAGCCTTGGGATCGTTCGGGTGCCTGGAATCGGTCTCATCTACACA 1680 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GAGCTGGTCACCGGGGTGCCTTCCATCTTCTCGCACTTTGTCACCAACCTGCCTGCTTTC 1740 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CATCAGGTTCTGGTCTTCGTTTGCGTCAAGTCCGTACCTGTGCCGTTCGTTCCAGAGGAC 1800 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GAACGGTACCTCATTGGACGGATCGGCCCCAGGGAATACCGTATGTACCGGTGCATCGTG 1860 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 AGGTATGGCTACAAAGATGTGCAGAAAGATGACGAGAACTTTGAGAACCACTTGGTGATG 1920 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 AGCATTGCCAAGTTCATCCAAATGGAAGCCGAGGAGGCAGCCTCCTCTGGGAGCTACGAA 1980 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 TCTTCGGAAGGGAGGATGGCTGTCATACACACAGAGGACACAACCGGCACCGGTCTGGTG 2040 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 ATGAGGGACTCCAATAACGAGGCTTCAGGCACGTCCCTGACAAGGAGCAGCAGGTCGGAG 2100 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 ACGCTCCGGAGCCTCCAGTCCATCTACGAGCAGGAGTCCGGTAGTCTCAGCCGGCGTCGC 2160 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 AGAGTCCGTTTTGAGATTGCGGAGGAGGAGCGGATCGACCCCCAGGTGCGGGACGAGCTG 2220 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 GCTGATCTCCTGGACGCCAAGGAGGCCGGCGTGACTTACATCATCGGCCACTCCTACGTG 2280 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 AAGGCAAGGAAGAACTCCAACTTCCTCAAGACGTTCGCCATCGACTACGCTTACTCGTTC 2340 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ------------------------------------------------------------ consensus_12893#0 CTCCGCAAGAACTGCAGGGGTCCCGCGGTGGCGCTGCACATACCCCACATTAGCCTCGTC 2400 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 -------------------------CACCCCCTCCTCCTCGTCGTCGTCGTCGTCGTGGT 35 consensus_12893#0 GAAGTCGGCATGATCTACTATGTCTAAATCGATTTTTCTGATCATGCTTGCCGTACTACC 2460 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CTCTCCTGCTCCGGCGAGGCGACCCCACGGCCGCCAAGGCGCGGGTTAGCTGATTTGGTT 95 consensus_12893#0 CAGTAATACTAGCTTTGTTTTGAGCTGAATCTTCTGTTGGTCATCCTCAACTGTGTACGT 2520 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 TTGATTTGATCTGATTTGATCTGGGGCTGCTTGCTTCGCGGTGCAGCCCGTCGTCACGGT 155 consensus_12893#0 CATTTTGTTTGCTCTTTTATACATGTAATGTAGTTGCCGAGTTACCATGTGATGTAAAGA 2580 consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GGGTGGGGGGGGGGGAGCGCAATGGACGCAGAGACCGGCCCGGCCGCGCCGCAGGACCAA 215 consensus_12893#0 TGCTGGCAGAACTAGCTTTAGCTGCTACCATCTGAACTCCGGGGCTTCGGTG--ATCT-- 2636 consensus_12893#2 -------------------------------------TCCGGGGCTTCGGTG--ATCT-- 19 consensus_12893#1 TGGAAAAGTTATTGCAGAACTATCTCTCTGCTAGCATTTCAGAGCTTTGGTGTGGTCTAT 275 * * * **** **** *** consensus_12893#0 -----TGTGAATACATC----CAGTTCAACTGTTAAAATGTTCAATGATAGCACATAACA 2687 consensus_12893#2 -----TGTGAATACATC----CAGTTCAACTGTTAAAATGTTCTTTTATAAAAAAAAA-- 68 consensus_12893#1 GGAGACTTGAGTACATCACCCCTGTACGTCTACAAAAGTGCATTTTCTGGGAGGCTGAAT 335 *** ****** * ** * ** *** ** * * consensus_12893#0 TGGCAATAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTA-------------------- 2727 consensus_12893#2 ----AAAAAAAAAAAAAAAAAAAA------------------------------------ 88 consensus_12893#1 AATTACCGTGATGAGACAACCATATTTGGATTGTTTTCGCTGATATTTTGGACTTTGACA 395 * * * * ** * * consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CTTCTTCCGTTGCTGAAGTATGTAATAATTGTATTGAACGCAGATGATAATGGGGGAGGT 455 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GGAACATTTGCTTTATACTCACTTCTCTGCAGGCATGCAAAGTTCAGCCTGCTTCCAAAC 515 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CAGCAATCGGCAGACGAAGAGCTTTCAACGTACTATCAGCCTGGAGTTGGTGGCATTATT 575 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 TCCTCTCCACTCAAAAGATTCCTGGAGAAGCACAGGAAGCTACGGACTTGTTTACTACTT 635 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 TTTGTTCTGTTTGGCGCATGCATGGTGATAGGTGATGGTGTTTTCACACCTGCTATCTCT 695 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GTCTTGTCAGCCATCTCTGGTTTAAAAGACCCTGGCCCAGGAGGAATACCAGATGGTTGG 755 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GTGGTGTTCATTGCATGTATTGTGCTTGTTGGCCTGTTTGCACTGCAACACCGAGGAACT 815 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CATAGGGTAGCATTTATGTTTGCGCCCATTGTTGTAGTATGGCTGTTGAGTATTGGTGTT 875 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ATTGGGCTTTATAATATCATCCACTGGAACCACAGAATATTTCTTGCTCTTTCTCCACAT 935 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 TATGTTATAAAGTTCTTCAAGATGACAGGAAAAGATGGTTGGCTTTCTCTTGGAGGAGTA 995 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CTTCTTGCTATAACAGGTACTGAAGCTATGTTTGCTGATCTTGGCCACTTCACTGCTGCA 1055 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 TCTATTAGGTTGGCTTTTGTTGGTGCCATATATCCCTGTCTTGTGCTGCAATACATGGGG 1115 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CAGGCTGCATTTCTTTCCAGAAACATGTCAGCTGTAGAAGATAGCTTTTACCAATCTGTA 1175 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CCAAGATCCCTGTTTTGGCCAGTGTTTGTCATTGCAACTCTTGCAGCGGTTGTGGGCAGC 1235 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CAGTCTATCATATCTGCTACCTTTTCAATTGTTAAGCAGTGTCTTTCTTTGGGATGTTTT 1295 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 CCACGGGTTAAGGTCGTGCATACATCAAGGTGGATCCATGGTCAGATTTACATACCTGAG 1355 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ATTAATTGGATTCTGATGGTTCTTTGTCTTGCTGTGACACTTGGTTTCCGAGACACGACA 1415 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GTTATTGGAAATGCTTACGGTCTTGCGTGTATCGTTGTGATGTTTGTTACCACCTGGTTG 1475 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 ATGGCATTGGTTATCATATTTGTGTGGCAAAAAAACATCCTGCTCGCCTTGTTATTTGTC 1535 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GTGGCGTTTGGGTCAATCGAAGTGGTGTACCTGTCGGCAGCAGTCACTAAAGTTCCTCAG 1595 consensus_12893#0 ------------------------------------------------------------ consensus_12893#2 ------------------------------------------------------------ consensus_12893#1 GGAGGATGGGCACCAATCGTATTTGCCTTCGTGTTCATGCTCGTCATGTACGTATGGCAC 1655 consensus_12893#0 ----- consensus_12893#2 ----- consensus_12893#1 TACGG 1660 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||