These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence [TAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGTTGTATGCTCATTTGTTTACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTTTTTTCTGGCGGGTGAAGCTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGCTGCGGCGAGGTGTTCGGCTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATCCATCTCAATGACCGTCACGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCTCACTCTTCTGTTTGATTTTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTTGATGCTTGTCATACCCAATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGCTTGGACACACAACGCCTGATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTGATGGCGTGTCGCCGGAGAGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTCCAAAATCAAAATCCGATTAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGAGCCCTGGACAATGATGTTTGGGA] [+] EMBL CB627266 [TAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGTTGTATGCTCATTTGTTTACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTTTTTTCTGGCGGGTGAAGCTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGCTGCGGCGAGGTGTTCGGCTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATCCATCTCAATGACCGTCACGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCTCACTCTTCTGTTTGATTTTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTTGATGCTTGTCATACCCAATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGCTTGGACACACAACGCCTGATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTGATGGCGTGTCGCCGGAGAGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTCCAAAATCAAAATCCGATTAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGAGCCCTGGACAATGATGTTTGGGA] consensusID : consensus_1290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACATACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACACCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCCGACACCAGTTGTATGCTCACTTTGTTTACCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA] [+] EMBL BM038784 [GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACATACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACACCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCCGACACCAGTTGTATGCTCACTTTGTTTACCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1290#0 ------------------------------------------------------------ consensus_1290#1 GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACAT 60 consensus_1290#0 ------------------------------------------------------------ consensus_1290#1 ACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACA 120 consensus_1290#0 ------------------------------------------TAGTGCTTTCTCTGTGTG 18 consensus_1290#1 CCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTG 180 ****************** consensus_1290#0 GGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTA 78 consensus_1290#1 GGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTA 240 ******************* **************************************** consensus_1290#0 TGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTGTAAATATAGTTAAATATG 138 consensus_1290#1 TGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATG 300 ************* *********** ********************************** consensus_1290#0 TCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGTTGTATGCTCA-TTTGTTT 197 consensus_1290#1 TCAGTGTAATATATGTAATAGGATTCATCGC-CGACACCAGTTGTATGCTCACTTTGTTT 359 ******************************* ****** ************* ******* consensus_1290#0 ACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATATGGCTGGGAAAATAAGTA 257 consensus_1290#1 ACCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTA 419 ** *********** ************* ******************************* consensus_1290#0 GGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTTTTTTCTGGCGGGTGAAG 317 consensus_1290#1 GGAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA---------------------- 457 ************************ consensus_1290#0 CTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGCTGCGGCGAGGTGTTCGG 377 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 CTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATCCATCTCAATGACCGTCA 437 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 CGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCTCACTCTTCTGTTTGATT 497 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 TTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTTGATGCTTGTCATACCCA 557 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 ATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGCTTGGACACACAACGCCT 617 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 GATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTGATGGCGTGTCGCCGGAG 677 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 AGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTCCAAAATCAAAATCCGAT 737 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 TAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGAGCCCTGGACAATGATGT 797 consensus_1290#1 ------------------------------------------------------------ consensus_1290#0 TTGGGA 803 consensus_1290#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||