cluster # 1290

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Oryza sativa
cluster # 1290 cluster # 1290 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1290#0 length = 803 sequences # 1

consensus_1290#1 length = 457 sequences # 1

consensusID : consensus_1290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence

                              [TAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGTTGTATGCTCATTTGTTTACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTTTTTTCTGGCGGGTGAAGCTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGCTGCGGCGAGGTGTTCGGCTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATCCATCTCAATGACCGTCACGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCTCACTCTTCTGTTTGATTTTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTTGATGCTTGTCATACCCAATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGCTTGGACACACAACGCCTGATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTGATGGCGTGTCGCCGGAGAGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTCCAAAATCAAAATCCGATTAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGAGCCCTGGACAATGATGTTTGGGA]

[+] EMBL CB627266             [TAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGTTGTATGCTCATTTGTTTACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTTTTTTCTGGCGGGTGAAGCTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGCTGCGGCGAGGTGTTCGGCTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATCCATCTCAATGACCGTCACGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCTCACTCTTCTGTTTGATTTTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTTGATGCTTGTCATACCCAATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGCTTGGACACACAACGCCTGATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTGATGGCGTGTCGCCGGAGAGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTCCAAAATCAAAATCCGATTAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGAGCCCTGGACAATGATGTTTGGGA]




>consensus_1290#0
TAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCAT
ATTATTTGGCAAGTTCTATGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTG
TAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGT
TGTATGCTCATTTGTTTACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATAT
GGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTT
TTTTCTGGCGGGTGAAGCTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGC
TGCGGCGAGGTGTTCGGCTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATC
CATCTCAATGACCGTCACGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCT
CACTCTTCTGTTTGATTTTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTT
GATGCTTGTCATACCCAATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGC
TTGGACACACAACGCCTGATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTG
ATGGCGTGTCGCCGGAGAGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTC
CAAAATCAAAATCCGATTAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGA
GCCCTGGACAATGATGTTTGGGA

consensusID : consensus_1290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACATACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACACCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCCGACACCAGTTGTATGCTCACTTTGTTTACCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA]

[+] EMBL BM038784             [GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACATACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACACCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTGGGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTATGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATGTCAGTGTAATATATGTAATAGGATTCATCGCCGACACCAGTTGTATGCTCACTTTGTTTACCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTAGGAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA]




>consensus_1290#1
GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACAT
ACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACA
CCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTG
GGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTA
TGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATG
TCAGTGTAATATATGTAATAGGATTCATCGCCGACACCAGTTGTATGCTCACTTTGTTTA
CCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTAG
GAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1290#0      ------------------------------------------------------------
consensus_1290#1      GCATCAAGGAGGCTCGAANNCAGATCGATTTTTTACACAGCCATTTCCATGAGGAAACAT 60
                                                                                  

consensus_1290#0      ------------------------------------------------------------
consensus_1290#1      ACACCCAGAAGGGGATGCCATGGGTCCAAACCACAGAAGGCCTACGAGGATGTGATCACA 120
                                                                                  

consensus_1290#0      ------------------------------------------TAGTGCTTTCTCTGTGTG 18
consensus_1290#1      CCGGCACTACCCTGAAATCAGTGCCCAGTGGATGAAGTCCTCTAGTGCTTTCTCTGTGTG 180
                                                                ******************

consensus_1290#0      GGATGCAGACTACTAGTGCAAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTA 78
consensus_1290#1      GGATGCAGACTACTAGTGCCAAAATTAAAGGCCCCCTGCCATATTATTTGGCAAGTTCTA 240
                      ******************* ****************************************

consensus_1290#0      TGAAATATTATTTGTTTACAGAATTGTGGTGTTTGTTCAGTGTAAATATAGTTAAATATG 138
consensus_1290#1      TGAAATATTATTTATTTACAGAATTATGGTGTTTGTTCAGTGTAAATATAGTTAAATATG 300
                      ************* *********** **********************************

consensus_1290#0      TCAGTGTAATATATGTAATAGGATTCATCGCACGACACAAGTTGTATGCTCA-TTTGTTT 197
consensus_1290#1      TCAGTGTAATATATGTAATAGGATTCATCGC-CGACACCAGTTGTATGCTCACTTTGTTT 359
                      ******************************* ****** ************* *******

consensus_1290#0      ACAATTTATTGCACATTATTATTTGTTCATTGTAATTAAATATGGCTGGGAAAATAAGTA 257
consensus_1290#1      ACCATTTATTGCACNTTATTATTTGTTCCTTGTAATTAAATATGGCTGGGAAAATAAGTA 419
                      ** *********** ************* *******************************

consensus_1290#0      GGAGGAGACCATATAACATCTTCCGTTTTTTTTTTTGTTTTTTTTTTCTGGCGGGTGAAG 317
consensus_1290#1      GGAGGAGACCATATAACATCTTCCTACCAAAAAAAAAA---------------------- 457
                      ************************                                    

consensus_1290#0      CTGCGAGCATTACACGAGGGGATGCAGGATCAGGGCGCCGTGCTGCGGCGAGGTGTTCGG 377
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      CTGCAGGCATTGCCACAACGAGGCCAAGAATTCGCTCGAGATCCATCTCAATGACCGTCA 437
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      CGAGATCCCCCGCCACGAAATCAAGAAGGTGTTTGTTTGTTCTCACTCTTCTGTTTGATT 497
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      TTAGCATCAGCTTTCCCTTTTGTTTTCAATTCGTGTACGCTTTGATGCTTGTCATACCCA 557
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      ATTTCATCCGATATAATCCGTGTCAAATTTATCTGAATTTTGCTTGGACACACAACGCCT 617
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      GATAGACAAAAAGAAAAGAAAAAAAATCTGCGGTCAATATTTGATGGCGTGTCGCCGGAG 677
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      AGATCATACCTCAGTTTTCACAAACCTATCATTTTCTTCAGTCCAAAATCAAAATCCGAT 737
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      TAGTAATTGCCATTTCAGTCTGATGCTGATGCATGCCTCTGGAGCCCTGGACAATGATGT 797
consensus_1290#1      ------------------------------------------------------------
                                                                                  

consensus_1290#0      TTGGGA 803
consensus_1290#1      ------