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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2016 fasta sequence
[TCTCTCCTCCTCTTTCGGCGCCCAAGCCGAACGAACGAGACGAGAGTACGAGACGCAACGCAAAGCCGACCAACGGCGACCACCTCAGCGCACCCGCAATCCCACGCCCGCCTGACACACACCGCGCGCAGCGCAGCGTGGGCAGCCGCGTAATTTCGCGCGGCCGCCACCGTATTCCGCCCCGTCCGGTCTCCGGACCCCGGTGGGTTGGGTTGCCGTGCCGTGCCGCGCCCTGTCTTTATCCCAAACCTCCTCCTCGCCAGCCAACGCTGCTTTCGCCGGTTACCCGGTCAAACTCATCCAACGGCGGCACGTCTCCGATCCGGTCACACCCACACACCCCACGAGATGCCTCGCCGGTCACGTGTGACGCGCGTGACGCCCCCTCCCTCTCTCGGCCGGCGCCCCACCCCCGCCGTGCTGTGTCCTTTTATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCGTCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGGGATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGGAGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTGCTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCTCAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCGGCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC-GC-GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTT-AAAAAAAAGTGTATCGACAAAAGGTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAATCGTGTAGGAGTAGCAACTTTCTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCGTTGACACAACATCAAAACAGCTATTGGATATAATTTGGCA]
[+] EMBL AK122091 [TCTCTCCTCCTCTTTCGGCGCCCAAGCCGAACGAACGAGACGAGAGTACGAGACGCAACGCAAAGCCGACCAACGGCGACCACCTCAGCGCACCCGCAATCCCACGCCCGCCTGACACACACCGCGCGCAGCGCAGCGTGGGCAGCCGCGTAATTTCGCGCGGCCGCCACCGTATTCCGCCCCGTCCGGTCTCCGGACCCCGGTGGGTTGGGTTGCCGTGCCGTGCCGCGCCCTGTCTTTATCCCAAACCTCCTCCTCGCCAGCCAACGCTGCTTTCGCCGGTTACCCGGTCAAACTCATCCAACGGCGGCACGTCTCCGATCCGGTCACACCCACACACCCCACGAGATGCCTCGCCGGTCACGTGTGACGCGCGTGACGCCCCCTCCCTCTCTCGGCCGGCGCCCCACCCCCGCCGTGCTGTGTCCTTTTATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCGTCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGGGATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGGAGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTGCTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCTCAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCGGCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC GC GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTCGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAGGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTTAAAAAAAAAGTGTATCGACAAAAGGTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAATCGTGTAGGAGTAGCAACTTTCTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCGTTGACACAACATCAAAACAGCTATTGGATATAATTTGGCA]
[+] EMBL AK067862 [ ATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCGTCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGGGATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGGAGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTGCTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCTCAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCGGCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC GC GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTT AAAAAAAAGTGTATCGACAA ]
[+] EMBL CB659525 [ CGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGC GC GCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTC ]
[+] EMBL AU176421 [ CGTGCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCAGCAGCCCGCGTCATGCCATCCACCTGGTCCTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAGGCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCCTTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGCGTTGCCGCTGCCCAGCTA ]
[-] EMBL CB659526 [ GCTTTTATCCAGCAGGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGGCGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGGCAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGCGATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACTGGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAACTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCGTGTTTTATTTTTCTTTCTT AAAAAAAAGTGT ]
consensusID : consensus_12900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence
[ATCTATCCGGCTAACCCCACCTGCCCCCGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTCACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGTTGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTGCTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCTCAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCGGCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTACTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGGCGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCGCCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCCCTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGATGGCTGCAGCGGCCGCGGCGGAATCTGATTCAGAGGACGGCTACAACAACCCGAACAACAACTATGAGGACGATGAAGACGACGGCTCGCAGCAGTCGGCGTCGCGGTCCGTGTCGTCTCGTTCCGGTGGCGTTGCAGCTGCAGGTGCAGGTGGTGGTGGCGTCAGCAGCAGCAAGAGGAAGAGGGGAGGCGGCGGCGGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCA-CCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATTTGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCAATT]
[+] EMBL AK099396 [ATCTATCCGGCTAACCCCACCTGCCCCCGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTCACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGTTGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTGCTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCTCAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCGGCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTACTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGGCGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCGCCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCCCTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGATGGCTGCAGCGGCCGCGGCGGAATCTGATTCAGAGGACGGCTACAACAACCCGAACAACAACTATGAGGACGATGAAGACGACGGCTCGCAGCAGTCGGCGTCGCGGTCCGTGTCGTCTCGTTCCGGTGGCGTTGCAGCTGCAGGTGCAGGTGGTGGTGGCGTCAGCAGCAGCAAGAGGAAGAGGGGAGGCGGCGGCGGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCA CCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATTTGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCAATT]
[+] EMBL CB680809 [ ACCTGCCCTTGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTCACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGTTGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTGCTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCTCAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCGGCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTACTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGGCGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCGCCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCCCTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGATGGCTGCAGCGGCCGCGGCG ]
[+] EMBL BI797864 [ GCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTGCAAAGGCAAAGCACAGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTC CCGCGCTCCCATTCCTCAGCACCCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTAGGTAAAGATTTGTTTGGTCTCAGATTTATATTGTGGTGGACTGGTGGTCATATTA GCCTGTA TGGATTTTTCAT CGATTCCTATATGAGTACTGTTCCT ]
consensusID : consensus_12900#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence
[GTGGCGGTAGGCCAAGAAGCCGTCCCCGCCCCGCGGGTCCCCATGATGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTTAGGTAAAGATTTTGTTTTGTCTCAGATTTATATTNTTGGTGGACTTGTGGTCAATTTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAAAAAAAAAAAANAAAAAAAAA]
[+] EMBL OS1321946 [GTGGCGGTAGGCCAAGAAGCCGTCCCCGCCCCGCGGGTCCCCATGATGCGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATTTGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAGGCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGTGCAGCTTCAGCTTTGCAAAGGCAAAGCACGGGAAGCATCCTGATGGTGCCACGGAGATGCTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAGAACAAGAGTTTTAGGTAAAGATTTTGTTTTGTCTCAGATTTATATTNTTGGTGGACTTGTGGTCAAT ]
[+] EMBL AU165618 [ TGCTTACCTATGATAATTTAAGAACAAGAG TTTAGGTAAAGA TTTGTTTGGTCTCAGATTTATATT GTGGTGGACTGGTGGTCATATTAGGCCTGTAGTGGATTTTTCATGCGATTCCTATATGGGTACTGTTCCTTTATATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGCAATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAAAAAAAAAAAANAAAAAAAAA]
consensusID : consensus_12900#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence
[GAGTAGAAAGTTGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF318707 [GAGTAGAAAGTTGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12900#0 TCTCTCCTCCTCTTTCGGCGCCCAAGCCGAACGAACGAGACGAGAGTACGAGACGCAACG 60
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CAAAGCCGACCAACGGCGACCACCTCAGCGCACCCGCAATCCCACGCCCGCCTGACACAC 120
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 ACCGCGCGCAGCGCAGCGTGGGCAGCCGCGTAATTTCGCGCGGCCGCCACCGTATTCCGC 180
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CCCGTCCGGTCTCCGGACCCCGGTGGGTTGGGTTGCCGTGCCGTGCCGCGCCCTGTCTTT 240
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 ATCCCAAACCTCCTCCTCGCCAGCCAACGCTGCTTTCGCCGGTTACCCGGTCAAACTCAT 300
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CCAACGGCGGCACGTCTCCGATCCGGTCACACCCACACACCCCACGAGATGCCTCGCCGG 360
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 TCACGTGTGACGCGCGTGACGCCCCCTCCCTCTCTCGGCCGGCGCCCCACCCCCGCCGTG 420
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CTGTGTCCTTTTATTCCAACCCTCACCGCCCCACGATTCACGCCACCACCACTCCGTCCG 480
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ----------------------------------------------------------AT 2
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 TCGTCTCGTCTCGTCGCCTACCTAGGGTTTCGTGTTTGGGAGATCTGAGAGGGGGAGGGG 540
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CTATCCGGCTAACCCCACCTGCCCCCGTCCGTCCGCCCGCCCGCCCGCCTCGGCGACTTC 62
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 GATGGAGGTGAGGGAGATGGCCGTGGCGGCGGCTGCGGCGGCGGCGGCGTCGTCCGGGGG 600
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ACGCGTACAAGGGGGATTTGTTTTCTCTAGGGTTTCGTTCGCGAGGAGGAGAGATCTGGT 122
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 AGGAGGTGGGGGGTTGAGGATGCCGCCGCCCAACCCTAACCTGCCGTACAGGGAGGATTG 660
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 TGGGGAGATGGACGGGAAGCCGCCGCCGCCGAACCCGAACCTGCCCTACCGGGAGGACTG 182
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CTGGAGCGAGGGCGAGACGGAGGCGCTGGTCCGCGCGTGGGGGAGCCGCTACGTCGAGCT 720
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CTGGAGCGACGGCGAGACGGCGGCGCTCGTCGACGCCTGGGGGAGGCGCTACGTCGACCT 242
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CAACCGGGGGAACCTGCGGCAGAAGCAGTGGCAGGAGGTGGCCGACGCCGTCAACTCGCG 780
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CAACCGCGGGAGCCTCCGCCAGCCGCAGTGGCGGGAGGTGGCCGAGGCCGTCAACGCGCG 302
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 GCGCGGGGCGGCCGCGCGCCGCCGCCCGCCGCGCACCGACGTGCAGTGCAAGAACCGCGT 840
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 GCCGGGGGCGTCCGCGCGCCGCCGGCCGCCGCGCACCGACATCCAGTGCAAGAACCGCGT 362
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCCCGCGTCATGCCATCCACCTGGTC 900
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CGACACCCTCAAGAAGAAGTACAAGGCGGAGCGCGCGCGGGGGACGCCCTCGTCCTGGTA 422
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CTTCTTCCCCGAGCTCGACCGCCTCGTCGGGCCCACCCTCTCCGCCTCCGCCTCCAAGAG 960
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CTTCTACAGGGACCTCGACATGCTCGTCGGCCCTACCCTCTCCGCCGCCGCCGCCGCCGG 482
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 GCCCTCGCCGTCGCCGTCGCCGGTGCCGCCGCCCCCTTACTTCGCCATGCCCATCCATCC 1020
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CGGTGGCGGTAGCGCCAAGAAGCCGTCCCCGCCCCGCGGGCTCCCCATGATGCGGAGGCG 542
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 TTCCGCGGTGAGGAAGCCCCCCTCGCCTTCGCCGTCGCCCTCTCCGCCGCCTCCTATGGC 1080
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CCTGGAATCGCCCTCCCGCTCCCCCTCGCCGCCGTCACCGACGCCGGCCGTGGCCCTCCC 602
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 GTTGCCGCTGCCCAGCTACCGTCGCGGGTCTCCGCTCCCCGCCGCCGCTCTTATCCAGCA 1140
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CTTGCCAAACTACCGCCAGGCGTCGAACCTCCCGTCCGCGGGCCTCCTCTTCAATAAGAT 662
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 GGAGGCCGCGGCTGCAGCCGCTGCCGCGGTGTCTGATTCGGAGGACTCTGAAGGCCCTGG 1200
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 GGCTGCAGCGGCCGCGGCGGAATCTGATTCAGAGGACGGCTACAACAACCCGAACAACAA 722
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CGATAACAACAATCACAACGCGCAGCGGTCACCGTCGCAATCTGTGTCATCGCGCTCCGG 1260
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CTATGAGGACGATGAAGACGACGGCTCGCAGCAGTCGGCGTCGCGGTCCGTGTCGTCTCG 782
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 CAATAGCAACAAGCGCAGCCGTCAGGAAGTTGATGGTGGTTTCAGGGAGCTGGCAAGGGC 1320
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 TTCCGGTGGCGTTGCAGCTGCAGGTGCAGGTGGTGGTGGCGTCAGCAGCAGCAAGAGGAA 842
consensus_12900#2 -----------------------------GTGGCGGTAGGCCAAGAAGCCGTCCCCGCCC 31
consensus_12900#0 GATCGAGGCATTTGCGGAGATGTATGAGCGTGTGGAGAGTGCGAAGCAAAAGCAGGCACT 1380
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 GAGGGGAGGCGGCGGCGG---CGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATT 899
consensus_12900#2 CGCGGGTCCCCATGATG----CGGAGGGTTCGGGGAGCTAGCGAGGGCAGTCGAAACATT 87
consensus_12900#0 GGAGATTGAGCGGCAGCGAATAGACTTCCTGAAGCAGTTGGAGGTCAAGCGCATGGAGAA 1440
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 TGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAG 959
consensus_12900#2 TGCCGAGATGTACGAGCGCATGGAATTCGCTAAGCAGAGGCACGCGGAGGAGATGGAGAG 147
consensus_12900#0 CTTTGTGGATGCACATGTCAAGCTTGCCAGGGCAAAGCGCATCAAGAAGCATGCAGGGAC 1500
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 GCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGT 1019
consensus_12900#2 GCAGAGGATCAAGTTCCTCAAGGATCTGGAGCTGAAGCGGATGCAGGCTTTCGTGGACGT 207
consensus_12900#0 TGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCT 1560
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 GCAGCTTCAGCTT-GCAAAGGCAAAGCACGGGAAGCATCC-TGATGGTGCCACGGAGATG 1077
consensus_12900#2 GCAGCTTCAGCTTTGCAAAGGCAAAGCACGGGAAGCATCC-TGATGGTGCCACGGAGATG 266
consensus_12900#0 CTCCACCTCCACCTACATATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCAT 1620
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 CTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAG 1137
consensus_12900#2 CTCATGTCTCTCGCCGCGCTCCCGTTCCTCAGCACCCCTGCTTACCTATGATAATTTAAG 326
consensus_12900#0 TAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGCACTTGGCAGCGATTCATTGTAGT 1680
consensus_12900#3 ----------------------------------------------GAGTAGAAAGTTGT 14
consensus_12900#1 AACAAGAGTTT-------------AGGTAAAGATTT-GTTTGGTCTCAGATTTATATTGT 1183
consensus_12900#2 AACAAGAGTTTT------------AGGTAAAGATTTTGTTTTGTCTCAGATTTATATTNT 374
* *
consensus_12900#0 TCGTAGCCTGGTAGT-ATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTT 1739
consensus_12900#3 TCGTAGCCTGGTAGT-ATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATGTT 73
consensus_12900#1 -GGTGGACTGGTGGTCATATTAGGCCTGTAG--TGGATTTTTCATGCG-ATTCCTATATG 1239
consensus_12900#2 TGGTGGACTTGTGGTCAATTTAGGCCTGTAG--TGGATTTTTCATGCG-ATTCCTATATG 431
** * ** ** ** * * ** ** * ** ** * * * * * ** *
consensus_12900#0 GACATTGGTGCCTGTGGGTTGTTAATCTGTTT-ACCTATTGTTTTATTGACATTTTAGGC 1798
consensus_12900#3 GACATTGGTGCCTGTGGGTTGTTAATCTGTTT-ACCTATTGTTTTATTGACATTTTAGGC 132
consensus_12900#1 GGTACTGTT-CCTTTA---TATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGC 1295
consensus_12900#2 GGTACTGTT-CCTTTA---TATTAAGCTGTCTCAGATATTCCAGCGTGCTTAAATTTGGC 487
* * ** * *** * * **** **** * * **** * * ** ***
consensus_12900#0 A-TGTAACTCTGACCTCCTGTTTTATTTTTCTTTCTTAAAAAAAAGTGTATCGACAAAAG 1857
consensus_12900#3 A-TGTAACTCTAAA-----------------------AAAAAAAAAAAAAAAAAAAAAAA 168
consensus_12900#1 AATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAGTTTGAAATTCAACTGTCA 1355
consensus_12900#2 AATGCCTGGTTGATATCTCCTCAGATTGGGAGGTTTACTAAAAAAAAAAAAANAAAAAAA 547
* ** * * ** *
consensus_12900#0 GTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAATCGTGTAGGAGTAGCAACTTT 1917
consensus_12900#3 A----------------------------------------------------------- 169
consensus_12900#1 ATT--------------------------------------------------------- 1358
consensus_12900#2 AA---------------------------------------------------------- 549
consensus_12900#0 CTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCGT 1977
consensus_12900#3 ------------------------------------------------------------
consensus_12900#1 ------------------------------------------------------------
consensus_12900#2 ------------------------------------------------------------
consensus_12900#0 TGACACAACATCAAAACAGCTATTGGATATAATTTGGCA 2016
consensus_12900#3 ---------------------------------------
consensus_12900#1 ---------------------------------------
consensus_12900#2 ---------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||