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Oryza sativa
cluster # 12904 cluster # 12904       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12904#0 length = 1549 sequences # 9  
consensus_12904#1 length = 1473 sequences # 1  
consensus_12904#2 length = 298 sequences # 1  

consensusID : consensus_12904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1549
fasta sequence
                              [TCGCCGCCGCTGCCGTTCCCCATCCCAAGTCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGACCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGTCCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGGCCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCACGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCTCAACCCGCTCAAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGGCTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACACCAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCTTGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGACATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCATCCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGGGAAGGGCATCTTCTCTTCCA-TCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCA-AGCTGC-ATAAAGCG-CGTATC-GTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACA-CTGAGG-ACAATAATTATACTGTCATAA-CC-AACAGCACAGACAGATTTACAAACTTATTGATCGGACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACA-GTGGCA-AGACTAGG-CTGTATTTGGACTGAAACTGTCCA-CTATGA-TGAATGTAAG-TTTGGTGAAAG-CAGCAGTAATTTA-GCAGCTATAATTTTAGA-TTTGG-TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGG-ATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAAATTCTGTTTGAAATGGACGAATTGCGATGAAACTAGATAAAAGCTCTGCGTTTTGCTGCGGAAAAAAAAAA]

[+] EMBL AK101727             [TCGCCGCCGCTGCCGTTCCCCATCCCAAGTCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGACCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGTCCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGGCCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCACGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCTCAACCCGCTCAAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGGCTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACACCAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCTTGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGACATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCATCCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGGGAAGGGCATCTTCTCTTCCA TCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCA AGCTGC ATAAAGCG CGTATC GTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACA CTGAGG ACAATAATTATACTGTCATAA CCAAACAGCACAGACAGATTTACAAACTTATTGATCGGACTCGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACA GTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAAG CAGCAGTAATTTA GCAGCTATAATTTTAGA TTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAATCGTTATGGATCCTTATAAATATGCTTATA                                                                                          ]
[+] EMBL AU068254             [                                                 ACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCG NGTNGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAA  CCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGACCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGTCCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF331046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCATCCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGGGAAGGGCATCTTCTCTTCCA TCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCA AGCTGC ATAAAGCG CGTATC GTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACA CTGAGG ACAATAATTATACTGTCATAA CCAAACAGCACAGACAGATTTACAAACTTATTGATCGGACTCGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACA GTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAAG CAGCAGTAATTTA GCAGCTATAATTTTAGA TTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAATCGTTATGGATCCTTATAAAaaa                                                                                                 ]
[+] EMBL BI798570             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCCATCCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCA GGCAGCTTTTCTGCTCCTTGGGGAAGGGCATCTTCTCTTCCA TCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCA AGCTGC ATAAAGCG CGTATC GTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACA CTGAGG ACAATAATTATACTGTCATAA CC AACAGCACAGACAGATTTACAAACTTATTGATCGGACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACA GTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAAG CAGCAGTAATTTA GCAGCTATAATTTTAGA TTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGG ATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAAA                                                                      ]
[+] EMBL BI799882             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGGCATCTTCTCTTCCAGTCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCACAGCTGC ATAAAGCG CGTATC GTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACCTGAGG ACCATAATTATACTGTCATAACCC AACAGCACAGACAGATTTACCAACTTATTGATCGGACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACACGTGGCACAGACTAGGCCTGTATTTGGACTGAAACTGTCCACCTATGACTGAATGTAAGCTTTGGTGAAAGCCACCAGTAATTTA GCAGCTATAATTTTAGACTTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGAC ACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGG ATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAAA                                                                      ]
[+] EMBL BI799071             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTCTTCCA TCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCA AGCTGCAATAAAGCG CGTATC GTTCATCGCACCTACTCTCA GTTGGAGGGGATGACACCTGAGG ACCATAATTATACTGTCATAA CC AACAGCACAGACAGATTTACCAACTTATTGATCGGACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACA GTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAAG CAGCAGTAATTTA GCAGCTATAATTTTAGA TTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGAC ACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGG ATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAAA                                                                      ]
[+] EMBL AU166468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCA AGCTGC ATAAAGCG GGTATCGGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACA CTGAGG NCAATAATTATACTGTCATAA CCAAACAGCNCAGNCAGATTTCCAAACTTATTGATCGGACTCGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACA GTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAAG CAGCAGTAATTTA GCAGCTATAATTTTAGA TTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAATCGTTATGGATCCTTAAAAAaaaaaaa                                                                                             ]
[+] EMBL BI809069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  C ATAAAGCGCCGTATC GTTCATCGCACCTACTCTCA GTTGGAGGGGATGACACCTGAGGCACCATAATTATACTGTCATAACCC AACAGCACAGACAGATTTACCAACTTATTGATCGGACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAA CAGAATGACCATGTGAAGGTTTGAACGAACACGTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAA  CACCAGTAATTTACGCAGCTATAATTTTAGA TTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGAC ACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTA CCATGG ATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTGAAGCCCCGGGTTCTGTTTGAAATGGACGAATTGCGATGAAACTAGATAAAAGCTCTGCGTTTTGCTGCGGAAAAAAAAAA]
[+] EMBL BI797545             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTGAAGGTTTGAACGAACA GTGGCA AGACTAGG CTGTATTTGGACTGAAACTGTCCA CTATGA TGAATGTAAG TTTGGTGAAAG CA CAGTAATTTA GCAGCTATAATTTTAGA TTTGGCTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACCACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGG ATCGTTATGGATCCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAA                                                                       ]


>consensus_12904#0 TCGCCGCCGCTGCCGTTCCCCATCCCAAGTCCCAGACCAAACAATGTCGACGCCTAGCCA GAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAA TCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGA GCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGG CGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGA GTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGA CCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGT CCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGG CCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCA CGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCT CAACCCGCTCAAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGG CTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACAC CAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCT TGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGA CATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCAT CCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGG GAAGGGCATCTTCTCTTCCATCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCAA GCTGCATAAAGCGCGTATCGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACTGA GGACAATAATTATACTGTCATAACCAACAGCACAGACAGATTTACAAACTTATTGATCGG ACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGA CCATGTGAAGGTTTGAACGAACAGTGGCAAGACTAGGCTGTATTTGGACTGAAACTGTCC ACTATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATAATTTTAGATT TGGTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACT TCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGGATCGTTATGGAT CCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAAATTCTGTTTGAAATGGACGAAT TGCGATGAAACTAGATAAAAGCTCTGCGTTTTGCTGCGGAAAAAAAAAA



consensusID : consensus_12904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1473
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGACCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGTCCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGGCCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCACGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCTCAACCCGCTCGAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGGCTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACACCAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCTTGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGACATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCATCCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGGGAAGGGCATCTTCTCTTCCATCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCAAGCTGCATAAAGCGCGTATCGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACTGAGGACAATAATTATACTGTCATAACCAAACAGCACAGACAGATTTACAAACTTATTGATCGGACTCGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACAGTGGCAAGACTAGGCTGTATTTGGACTGAAACTGTCCACTATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATAATTTTAGATTTGGTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK109379             [TTCCTCGAGCACTGTTGGCCTACTGGCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGACCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGTCCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGGCCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCACGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCTCAACCCGCTCGAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGGCTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACACCAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCTTGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGACATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCATCCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGGGAAGGGCATCTTCTCTTCCATCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCAAGCTGCATAAAGCGCGTATCGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACTGAGGACAATAATTATACTGTCATAACCAAACAGCACAGACAGATTTACAAACTTATTGATCGGACTCGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCATGTGAAGGTTTGAACGAACAGTGGCAAGACTAGGCTGTATTTGGACTGAAACTGTCCACTATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATAATTTTAGATTTGGTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT]


>consensus_12904#1 TTCCTCGAGCACTGTTGGCCTACTGGCCCAGACCAAACAATGTCGACGCCTAGCCAGAAG AAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGC CTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCAC GACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGC GGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCG CGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGACCCC AAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGTCCTC ATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGGCCTC GACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCACGAC GCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCTCAAC CCGCTCGAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGGCTCC CACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACACCAAC CAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCTTGGT GGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGACATC AGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCATCCTC AACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGGGAAG GGCATCTTCTCTTCCATCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCAAGCTG CATAAAGCGCGTATCGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACTGAGGAC AATAATTATACTGTCATAACCAAACAGCACAGACAGATTTACAAACTTATTGATCGGACT CGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATGACCA TGTGAAGGTTTGAACGAACAGTGGCAAGACTAGGCTGTATTTGGACTGAAACTGTCCACT ATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATAATTTTAGATTTGG TGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAACTTCT CCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT



consensusID : consensus_12904#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [TGGACTGAAGGAGTAGAAAAAGTCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGC]

[+] EMBL CF331045             [TGGACTGAAGGAGTAGAAAAAGTCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGC]


>consensus_12904#2 TGGACTGAAGGAGTAGAAAAAGTCCCAGACCAAACAATGTCGACGCCTAGCCAGAAGAAG AGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAATCGCCTG GGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGAGCACGAC GATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGGCGGCGGC GAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGAGTCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12904#0      TCGCCGCCGCTGCCGTTCCCCATCCCAAGTCCCAGACCAAACAATGTCGACGCCTAGCCA 60
consensus_12904#1      ----TTCCTCGAGCACTGTTGGCCTACTGGCCCAGACCAAACAATGTCGACGCCTAGCCA 56
consensus_12904#2      -----TGGACTGAAGGAGTAGA--AAAAGTCCCAGACCAAACAATGTCGACGCCTAGCCA 53
                                *                  * ******************************

consensus_12904#0      GAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAA 120
consensus_12904#1      GAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAA 116
consensus_12904#2      GAAGAAGAGGAGGAGTAAGGGGAAGGACGGCGCGGTGGCGCCGGTGGGACTGAGGCTTAA 113
                       ************************************************************

consensus_12904#0      TCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGA 180
consensus_12904#1      TCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGA 176
consensus_12904#2      TCGCCTGGGTCGTGCTTCTCCTCGCGAGGCCGCCGGGAAGCCGGTGTACCTTGCGGTGGA 173
                       ************************************************************

consensus_12904#0      GCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGG 240
consensus_12904#1      GCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGG 236
consensus_12904#2      GCACGACGATGACCAGGAGGTGCCCGCGCACTCCATCGTCGAGCTCGGCGGCGGCGGCGG 233
                       ************************************************************

consensus_12904#0      CGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGA 300
consensus_12904#1      CGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGA 296
consensus_12904#2      CGGCGGCGAAGCCCACCTTGTGCTTCACAACGTCCGCGGGATGTCCTTCGCCACCGTGGA 293
                       ************************************************************

consensus_12904#0      GTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGA 360
consensus_12904#1      GTCGCGCTACGGGCCCCGGATCGTAGGCGTCGGCGGCAAGTTGTTCACCACGGTGTACGA 356
consensus_12904#2      GTCGC------------------------------------------------------- 298
                       *****                                                       

consensus_12904#0      CCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGT 420
consensus_12904#1      CCCCAAGACCTCGATGGAGATCCCCGGCCCCTTCCTCGTCGAGCCTAAGCTCCGGCCCGT 416
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGG 480
consensus_12904#1      CCTCATCCCGCGGGGCAGCAAGCTGTATGCGCTCTCCCGAACCCCTTCCGTCGTGCCCGG 476
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCA 540
consensus_12904#1      CCTCGACTTCCTGCCCTGGTTCGTGTACCTCGACCTCAACTACGTCTTGGTCGCCCCTCA 536
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCT 600
consensus_12904#1      CGACGCGAGAACCATGGGATGGCACCACTTGCCGCCGCCGCCCATCTTCCCTGTCCGCCT 596
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CAACCCGCTCAAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGG 660
consensus_12904#1      CAACCCGCTCGAGTACCGTGACCCGCCGGAGGTCCGCGTCGCCTCCTACGCCGTGGTCGG 656
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACAC 720
consensus_12904#1      CTCCCACATACTGCTCTCCGTGCAGCAAGACAAGGGCACCTGCGCTTTCGACATGGACAC 716
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCT 780
consensus_12904#1      CAACCAGTGGGATATGGTGGACGCCAACAACTTGCCTTTCATCGGCAAGGCTGTTCCCCT 776
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      TGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGA 840
consensus_12904#1      TGGTGGCCACCTCTTCATTGCCCGCTCCATAGCCAATGGCGGTGCTGCTGCAGTGTACGA 836
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCAT 900
consensus_12904#1      CATCAGGGTCTTCCCCTTACAGCCAACAAGTTCAGGGTCACACAAGACGGAGTTGTCCAT 896
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGG 960
consensus_12904#1      CCTCAACATCCCCGTGGTGTCCAAGGGCATTGTTCCAGGGCAGCTTTTCTGCTCCTTGGG 956
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      GAAGGGCATCTTCTCTTCCATCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCAA 1020
consensus_12904#1      GAAGGGCATCTTCTCTTCCATCGACGTTCGATCTGCTGCTACTCCTGGTCCAGACGCCAA 1016
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      GCTGCATAAAGCGCGTATCGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACTGA 1080
consensus_12904#1      GCTGCATAAAGCGCGTATCGTTCATCGCACCTACTCTCAGGTTGGAGGGGATGACACTGA 1076
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      GGACAATAATTATACTGTCATAACCAA-CAGCACAGACAGATTTACAAACTTATTGATCG 1139
consensus_12904#1      GGACAATAATTATACTGTCATAACCAAACAGCACAGACAGATTTACAAACTTATTGATCG 1136
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      GACTCATCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATG 1199
consensus_12904#1      GACTCGTCATTTGGCTCATCCTTCGCCGGTTGTTGCTGCTTTAACTATGGAAGCAGAATG 1196
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      ACCATGTGAAGGTTTGAACGAACAGTGGCAAGACTAGGCTGTATTTGGACTGAAACTGTC 1259
consensus_12904#1      ACCATGTGAAGGTTTGAACGAACAGTGGCAAGACTAGGCTGTATTTGGACTGAAACTGTC 1256
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      CACTATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATAATTTTAGAT 1319
consensus_12904#1      CACTATGATGAATGTAAGTTTGGTGAAAGCAGCAGTAATTTAGCAGCTATAATTTTAGAT 1316
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      TTGGTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAAC 1379
consensus_12904#1      TTGGTGTTTCATGCGAAATTTGACTTGGTTTTGGTTATGCATCTGCTTGAACTAGACAAC 1376
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      TTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCCATGGATCGTTATGGA 1439
consensus_12904#1      TTCTCCGGTGTCTGTTGTCTTGTTTATGGTAATTTGTGGCTAGCAATGGAAAAAAAAAAA 1436
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      TCCTTATAAATATGCTTATATTCGTTGGTGAAAAAAAAAATTCTGTTTGAAATGGACGAA 1499
consensus_12904#1      -----AAAAAAAAAAAAAAA------AAAAAAAAAAAAAAGGCCACAT------------ 1473
consensus_12904#2      ------------------------------------------------------------
                                                                                   

consensus_12904#0      TTGCGATGAAACTAGATAAAAGCTCTGCGTTTTGCTGCGGAAAAAAAAAA 1549
consensus_12904#1      --------------------------------------------------
consensus_12904#2      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)