cluster # 12909

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Oryza sativa
cluster # 12909 cluster # 12909 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12909#0 length = 2141 sequences # 6

consensus_12909#1 length = 973 sequences # 4
consensus_12909#2 length = 343 sequences # 1

consensusID : consensus_12909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2141
fasta sequence

                              [CCCTCCCGTGTCCAAAGCCCCGCAAACCCTCGCGGCGACCTCACCTCACCCGCCCTGCCCTAGCTCAAAGCTCCCCGCCCCGGCCGCCGCTGGCGCCGCCGGGCGATGGATCTCCGCCGGCCGCCGCGCTCGTCGTCGGGGGGCGTGGAGCCCAAGATCCGGCAGGTGGGGTTCGTCACCCCCGACGCCTCCTCCTCGGCCCCGCCCGCCGAGCCCCCCGCCGCCGCCGCTGCAGCGGTCGCGGCGGCTGCTGCTGCCGCCTCCTCGGCGGCGGCCGCGGCGGCGCAGGCGCAGGCGTCCTCCGAGGGGTCCCCCCCGGCGTCCGAGCTCTCCCCGGGCTCGCTCTCCCCCGTAATGATCCCGCCCCCGCGCCACGCCGACCACCTCGCCCCAGGCTCGCCCTCCCCCGCGGCGTCCCCCTCCGAGCTGGGCGACGACGAGTCCTGGTCTCGGGCGCCTTCTGCCGCCGAGCTCGAATCAAACAATAACGATTTGGCTGAAATACGGAATGACAATGTTCCAGCTTCAATTCCACAAGAGCAGAATACTTCTACAGCAGAGAGGCGTGCTATTCACGAAGCTCAGCGTGCTGCTATAGCTGCTGCCAAGGATGCAGGGTTATCATGAAAGTCTGCACGCACTGGTTCAAGGGCTAGTCCTGCAATGCCCAAGCAAGCCAAATCATCATAAGTTTCTCAGAAGAAAGATGTGCCCCAAGCTGCATCTACTGCTGCTTCTGAGAAGAAGGTTACTGAACGTCCTTCAGAAAGAGATAGGAAGAAAGATGCGCCTCACCCTCGTATGCAGTTTGATGATGTGCACCGGGTGGAGAAAGCAAAAAAACGTGCAATTGTAAATCAATCTGAAGCAAGAAACAGAGTTGAATTGTTTAGGCACTTGCCTCAGTATGTGCATGGCACTCAACTTCCTGGCCTTGAATCAAAGTTTTTTCAACTTGAACCAATGCATCCTTCTGTGTACAAGGTTGGGCTCCAATATTTGTCTGGTGAGGTTTCTGGTGGAAATGGTCGTTGTATAGCAATGCTTCTTGCATTCCAAGTGGCAATAAAAGATTACTCTACACCTCCCAAAAAAACTCTGAGTAGAGATCTTACAGCGAAAATCAGCAGTTATGTGTCGTTTCTTATTGAGTGCAGGCCTCTGTCAATTAGCATGGGCAATGCTATTAGGTTTTTAAAGAACAGGATTGCCAAGCTACCACTCACATTGTCAGAATCAGAAGCCAAAGCCAGTCTTCAATCTGATATTGATCGATTCATTAATGAAAAAATAGTTGTGGCAGATAAGGTTATTGTCAGTCATGCTATCACAAAAGTCAGAGACAATGATGTCTTGCTGACATATGGGTCATCGTCAGTTGTTGAAATGATTCTGGATCATGCTCATGAACTTGGGAGGAAGTTCCGTGTTATAGTGGTAGATTCTCGTCCCAAGCTTGAGGGACAAGGATTACTACGTAGATTAGTGGAAAAGGGCATCAACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTTTTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTTTAGAGTCGGGACAGCATCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATACAAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACACCAATTTTGGTAACTGTTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCCCAAGATGGTCCAATTTTGATATCCCCATGGCTCCGTCTAAAAAAAAAAAAAAAAAA]

[+] EMBL CB641128             [CCCTCCCGTGTCCAAAGCCCCGCAAACCCTCGCGGCGACCTCACCTCACCCGCCCTGCCCTAGCTCAAAGCTCCCCGCCCCGGCCGCCGCTGGCGCCGCCGGGCGATGGATCTCCGCCGGCCGCCGCGCTCGTCGTCGGGGGGCGTGGAGCCCAAGATCCGGCAGGTGGGGTTCGTCACCCCCGACGCCTCCTCCTCGGCCCCGCCCGCCGAGCCCCCCGCCGCCGCCGCTGCAGCGGTCGCGGCGGCTGCTGCTGCCGCCTCCTCGGCGGCGGCCGCGGCGGCGCAGGCGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB648197             [                                                                   AAGCTCCCCGCCCCGGCCGCCGCTGGCGCCGCCGGGCGATGGATCTCCGCCGGCCGCCGCGCTCGTCGTCGGGGGGCGTGGAGCCCAAGATCCGGCAGGTGGGGTTCGTCACCCCCGACGCCTCCTCCTCGGCCCCGCCCGCCGAGCCCCCCGCCGCCGCCGCTGCAGCGGTCGCGGCGGCTGCTGCTGCCGCCTCCTCGGCGGCGGCCGCGGCGGCGCAGGCGCAGGCGTCCTCCGAGGGGTCCCCCCCGGCGTCCGAGCTCTCCCCGGGCTCGCTCTCCCCCGTAATGATCCCGCCCCCGCGCCACGCCGACCACCTCGCCCCAGGCTCGCCCTCCCCCGCGGCGTCCCCCTCCGAGCTGGGCGACGACGAGTCCTGGTCTCGGGCGCCTTCTGCCGCCGAGCTCGAATCAAACAATAACGATTTGGCTGAAATACGGAATGACAATGTTCCAGCTTCAATTCCACAAGAGCAGAATACTTCTACAGCAGAGAGGCGTGCTATTCACGAAGCTCAGCGTGCTGCTATAGCTGCTGCCAAGGATGCAGGGTTATCATGAAAGTCTGCACGCACTGGTTCAAGGGCTAGTCCTGCAATGCCCAAGCAAGCCAAATCATCATAAGTTTCTCAGAAGAAAGATGTGCCCCCAGCTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB648195             [                                                                   AAGCTCCCCTCCCCGGCCGCCGCTGGCGCCGCCGGGCGATGGATCTCCGCCGGCCGCCGCGCTCGTCGTCGGGGGGCGTGGAGCCCAAGATCCGGCAGGTGGGGTTCGTCACCCCCGACGCCTCCTCCTCGGCCCCGCCCGCCGAGCCCCCCGCCGCCGCCGCTGCAGCGGTCGCGGCGGCTGCTGCTGCCGCCTCCTCGGCGGCGGCCGCGGCGGCGCAGGCGCAGGCGTCCTCCGAGGGGTCCCCCCCGGCGTCCGAGCTCTCCCCGGGCTCGCTCTCCCCCGTCATGATCCCGCCCCCGCGCCACGCCGACCACCTCGCCCCAGGCTCGCCCTCCCCCGCGGCGTCCCCCTCCGAGCTGGGCGACAACGAGTCCTGGTCTCGGGCGCCTTCTGCCGCCGAGCTCGAATCAAACAATAACGATTTGGCTGAAATACGGAATGACAATGTTCCAGCTTCATTTCCACATGAGCAGAATACTTCTAAAGCAGAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB644192             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTCAGCGTGCTGCTAAAGCTGCTGCCAAGGAGGCAGGGTTATCAGGAAAGTCTGCAGGCACTGGTTCAGGGGCTAATCCTGCAATGCCCAAGCAAGCCAAATCATCAAAAGTTTCTCAGAAGAAAGATGTGCCCCAAGCTGCATCTACTGCTGCTTCTGAGAAGAAGGTTACTGAACGTCCTTCAGAAAGAGATAGGAAGAAAGATGCGCCTCACCCTCGTATGCAGTTTGATGATGTGCACCGGGTGGAGAAAGCAAAAAAACGTGCAATTGTAAATCAATCTGAAGCAAGAAACAGAGTTGAATTGTTTAGGCACTTGCCTCAGTATGTGCATGGCACTCAACTTCCTGGCCTTGAATCAAAGTTTTTTCAACTTGAACCAATGCATCCTTCTGTGTACAAGGTTGGGCTCCAATATTTGTCTGGTGAGGTTTCTGGTGGAAATGGTCGTTGTATAGCAATGCTTCTTGCATTCCAAGTGGCAATAAAAGATTACTCTACACCTCCCAAAAAAACTCTGAGTAGAGATCTTACAGCGAAAATCAGCAGTTATGTGTCGTTTCTTATTGAGTGCAGGCCTCTGTCAATTAGCATGGGCAATGCTATTAGGTTTTTAAAGAACAGGATTGCCAAGCTACCACTCACATTGTCAGAATCAGAAGCCAAAGCCAGTCTTCAATCTGATATTGATCGATTCATTAATGAAAAAATAGTTGTGGCAGATAAGGTTATTGTCAGTCATGCTATCACAAAAGTCAGAGACAATGATGTCTTGCTGACATATGGGTCATCGTCAGTTGTTGAAATGATTCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB677935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTCCCATGAAAGATGTGCCCCAAGCTGCATCTACTGCTGCTTCTGAGAAGAAGGTTACTGAACGTCCTTCAGAAAGAGATAGGAAGAAAGATGCGCCTCACCCTCGTATGCAGTTTGATGATGTGCACCGGGTGGAGAAAGCAAAAAAACGTGCAATTGTAAATCAATCTGAAGCAAGAAACAGAGTTGAATTGTTTAGGCACTTGCCTCAGTATGTGCATGGCACTCAACTTCCTGGCCTTGAATCAAAGTTTTTTCAACTTGAACCAATGCATCCTTCTGTGTACAAGGTTGGGCTCCAATATTTGTCTGGTGAGGTTTCTGGTGGAAATGGTCGTTGTATAGCAATGCTTCTTGCATTCCAAGTGGCAATAAAAGATTACTCTACACCTCCCAAAAAAACTCTGAGTAGAGATCTTACAGCGAAAATCAGCAGGTATGTGTCGTTTCTTATTGAGTGCAGGCCTCTGTCAATTAGCATGGGCAATGCTATTAGGTTTTTAAAGAACAGGATTGCCAAGCTACCACTCACATTGTCAGAATCAGAAGCCAAAGCCAGTCTTCAATCTGATATTGATCGATTCATTAATGAAAAAATAGTTGTGGCAGATAAGGTTATTGTCAGTCATGCTATCACAACAGTCAGAGACAATGATGTCTTGCTGACATATGGGTCATCGTCAGTTGTTGAAATGATTCTGGATCATGCTCATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB644193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGATGTCTTGCTGACATATGGGTCATCGTCAGTTGTTGAAATGATTCTGGATCATGCTCATGAACTTGGGAGGAAGTTCCGTGTTATAGTGGTAGATTCTCGTCCCAAGCTTGAGGGACAAGGATTACTACGTAGATTAGTGGAAAAGGGCATCAACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTTTTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTTTAGAGTCGGGACAGCATCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATACAAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACACCAATTTTGGTAACTGTTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCCCAAGATGGTCCAATTTTGATATCCCCATGGCTCCGTCTAAAAAAAAAAAAAAAAAA]




>consensus_12909#0
CCCTCCCGTGTCCAAAGCCCCGCAAACCCTCGCGGCGACCTCACCTCACCCGCCCTGCCC
TAGCTCAAAGCTCCCCGCCCCGGCCGCCGCTGGCGCCGCCGGGCGATGGATCTCCGCCGG
CCGCCGCGCTCGTCGTCGGGGGGCGTGGAGCCCAAGATCCGGCAGGTGGGGTTCGTCACC
CCCGACGCCTCCTCCTCGGCCCCGCCCGCCGAGCCCCCCGCCGCCGCCGCTGCAGCGGTC
GCGGCGGCTGCTGCTGCCGCCTCCTCGGCGGCGGCCGCGGCGGCGCAGGCGCAGGCGTCC
TCCGAGGGGTCCCCCCCGGCGTCCGAGCTCTCCCCGGGCTCGCTCTCCCCCGTAATGATC
CCGCCCCCGCGCCACGCCGACCACCTCGCCCCAGGCTCGCCCTCCCCCGCGGCGTCCCCC
TCCGAGCTGGGCGACGACGAGTCCTGGTCTCGGGCGCCTTCTGCCGCCGAGCTCGAATCA
AACAATAACGATTTGGCTGAAATACGGAATGACAATGTTCCAGCTTCAATTCCACAAGAG
CAGAATACTTCTACAGCAGAGAGGCGTGCTATTCACGAAGCTCAGCGTGCTGCTATAGCT
GCTGCCAAGGATGCAGGGTTATCATGAAAGTCTGCACGCACTGGTTCAAGGGCTAGTCCT
GCAATGCCCAAGCAAGCCAAATCATCATAAGTTTCTCAGAAGAAAGATGTGCCCCAAGCT
GCATCTACTGCTGCTTCTGAGAAGAAGGTTACTGAACGTCCTTCAGAAAGAGATAGGAAG
AAAGATGCGCCTCACCCTCGTATGCAGTTTGATGATGTGCACCGGGTGGAGAAAGCAAAA
AAACGTGCAATTGTAAATCAATCTGAAGCAAGAAACAGAGTTGAATTGTTTAGGCACTTG
CCTCAGTATGTGCATGGCACTCAACTTCCTGGCCTTGAATCAAAGTTTTTTCAACTTGAA
CCAATGCATCCTTCTGTGTACAAGGTTGGGCTCCAATATTTGTCTGGTGAGGTTTCTGGT
GGAAATGGTCGTTGTATAGCAATGCTTCTTGCATTCCAAGTGGCAATAAAAGATTACTCT
ACACCTCCCAAAAAAACTCTGAGTAGAGATCTTACAGCGAAAATCAGCAGTTATGTGTCG
TTTCTTATTGAGTGCAGGCCTCTGTCAATTAGCATGGGCAATGCTATTAGGTTTTTAAAG
AACAGGATTGCCAAGCTACCACTCACATTGTCAGAATCAGAAGCCAAAGCCAGTCTTCAA
TCTGATATTGATCGATTCATTAATGAAAAAATAGTTGTGGCAGATAAGGTTATTGTCAGT
CATGCTATCACAAAAGTCAGAGACAATGATGTCTTGCTGACATATGGGTCATCGTCAGTT
GTTGAAATGATTCTGGATCATGCTCATGAACTTGGGAGGAAGTTCCGTGTTATAGTGGTA
GATTCTCGTCCCAAGCTTGAGGGACAAGGATTACTACGTAGATTAGTGGAAAAGGGCATC
AACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTT
TTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTTTAGAGTCGGGACAGCA
TCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATAC
AAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGAT
GTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAAT
GAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATG
ATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTAT
CGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACACCAATTTTGGTAACTGTT
GTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTC
AGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCCCAAGATGGTCCAATT
TTGATATCCCCATGGCTCCGTCTAAAAAAAAAAAAAAAAAA

consensusID : consensus_12909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 973
fasta sequence

                              [TCAACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTTTTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTCTAGAGTCGGGACAGCATCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATACAAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACAACAATTTTG-GTAACTGTTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAATTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTATGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAGCCTCCTCTGGTCATGCGCGTGATAGTAACTGGGACCTGAGATGAATTCGAAGCTATATTTGTAACAGTATTCACCTGTCCAATACATCATGTAGATTGGGGGGACTTCGCGATTACGCATGAGGTATCGGGATAGGGATAGGTTGCGGAAATCTCATACGTTGCCTGAGCACTTCGCGATGCCTATAATTTACTAGGAATATTTTGCAACTTGGGGATAGTTAGATAAAAACCGATTTTCAAGCTGCATGGAA]

[+] EMBL AK060478             [TCAACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTTTTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTCTAGAGTCGGGACAGCATCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATACAAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTGCTGCATTATGACAACAATTTTG GTAACTGTTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAATTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTATGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAGCCTCCTCTGGTCATGCGCGTGATAGTAACTGGGACCTGAGATGAATTCGAAGCTATATTTGTAACAGTATTCACCTGTCCAATACATCATGTAGATTGGGGGGACTTCGCGATTACGCATGAGGTATCGGGATAGGGATAGGTTGCGGAAATCTCATACGTTGCCTGAGCACTTCGCGATGCCTATAATTTACTAGTAATATTTTGCAACTTGGGGATAGTTAGATACATACCGATTTTCAAGCTGCATGGAA]
[-] EMBL CB648198             [                                                                                                                                                                                          TTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACAACAATTTTG GTAACTGTTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAATTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTATGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAGCCTCCTCTGGTCATGCGCGTGATAGTAACTGGGACCTGAGATGAATTCGAAGCTATATTTGTAACAGTATTCACCTGTCCAATACATCATGTAGATTGGGGGGACTTCGCGATTACGCATGAGGTATCGGGATAGGGATAGGTTGCGGAAATCTCATACGTTGCCTGAGCACTTCGCGATGCCTATAATTTACTAGGAATATTTTGCAACTTGGGGATAGTTAGATAAAA                       ]
[-] EMBL CB648196             [                                                                                                                                                                                                                              ATGAGCTTGGTGATCCAGATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACAATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGATGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACAACAATTTTG GTAACTGTTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAATTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTATGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAGCCTCCTCTGGTCATGCGCGTGATAGTAACTGGGACCTGAGATGAATTCGAAGCTATATTTGTAACAGTATTCACCTGTCCAATACATCATGTAGATTGGGGGGACTTCGCGATTACGCATGAGGTATCGGGATAGGGATAGGTTGCGGAAATCTCATACGTTGCCTGAGCACTTCGCGATGCCTATAATTTTCTAAGGATATTTTGCAACTTGGGGATAGTTAGATAAAAACata                  ]
[+] EMBL OS38024              [                                                                                                                                                                                                                                                                                                                                                                                                       CACAAGTGTACCTGTCATTGTGAGAGAGTATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACAACAATTTTGTGTAACTGTTGTTGGCTTGCTG CCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTCTCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAATTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTATGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAGCCTCC CTGGTCATGCGCGTGATAGT ACTGGGACCTGAGA                                                                                                                                                                                                                    ]




>consensus_12909#1
TCAACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAG
TTTTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTCTAGAGTCGGGACAG
CATCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCAT
ACAAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAG
ATGTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGCCATCTTAAGAACTTGGCAGACA
ATGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGTGTCGA
TGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGT
ATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACAACAATTTTGGTAACTG
TTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTC
TCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAA
TTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTA
TGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAG
CCTCCTCTGGTCATGCGCGTGATAGTAACTGGGACCTGAGATGAATTCGAAGCTATATTT
GTAACAGTATTCACCTGTCCAATACATCATGTAGATTGGGGGGACTTCGCGATTACGCAT
GAGGTATCGGGATAGGGATAGGTTGCGGAAATCTCATACGTTGCCTGAGCACTTCGCGAT
GCCTATAATTTACTAGGAATATTTTGCAACTTGGGGATAGTTAGATAAAAACCGATTTTC
AAGCTGCATGGAA

consensusID : consensus_12909#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [AGGACGAGACAAGGGGCTGGGCGACGACGAGTCCTGGTCGCGGGCGCCTTCTGCCGCCGAGCTCGGTACGCGCTCTTGAGCCTTTATCCGGTTGCAGCAATTTCGAAAGCGCTTTCTGCGAATTGAGGCCGCGGACGTTGCTATGTATGATGGTACTGTCACGAACTGAAAATTTTTGACGAGAATTTCATACGGTGAAGCATAGGAACGGAGNTTATACCTCTGGTTATGTAGAGGATGTGTGTGCTGCATCTGCGTAAACCGTAACATGAAGNTTATGCTCAATAATGGAAATTTTTTTGAACNCATAAGATTCGAATTCGACTCACTTGGCATCACANTA]

[+] EMBL CA764129             [AGGACGAGACAAGGGGCTGGGCGACGACGAGTCCTGGTCGCGGGCGCCTTCTGCCGCCGAGCTCGGTACGCGCTCTTGAGCCTTTATCCGGTTGCAGCAATTTCGAAAGCGCTTTCTGCGAATTGAGGCCGCGGACGTTGCTATGTATGATGGTACTGTCACGAACTGAAAATTTTTGACGAGAATTTCATACGGTGAAGCATAGGAACGGAGNTTATACCTCTGGTTATGTAGAGGATGTGTGTGCTGCATCTGCGTAAACCGTAACATGAAGNTTATGCTCAATAATGGAAATTTTTTTGAACNCATAAGATTCGAATTCGACTCACTTGGCATCACANTA]




>consensus_12909#2
AGGACGAGACAAGGGGCTGGGCGACGACGAGTCCTGGTCGCGGGCGCCTTCTGCCGCCGA
GCTCGGTACGCGCTCTTGAGCCTTTATCCGGTTGCAGCAATTTCGAAAGCGCTTTCTGCG
AATTGAGGCCGCGGACGTTGCTATGTATGATGGTACTGTCACGAACTGAAAATTTTTGAC
GAGAATTTCATACGGTGAAGCATAGGAACGGAGNTTATACCTCTGGTTATGTAGAGGATG
TGTGTGCTGCATCTGCGTAAACCGTAACATGAAGNTTATGCTCAATAATGGAAATTTTTT
TGAACNCATAAGATTCGAATTCGACTCACTTGGCATCACANTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12909#0      CCCTCCCGTGTCCAAAGCCCCGCAAACCCTCGCGGCGACCTCACCTCACCCGCCCTGCCC 60
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TAGCTCAAAGCTCCCCGCCCCGGCCGCCGCTGGCGCCGCCGGGCGATGGATCTCCGCCGG 120
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CCGCCGCGCTCGTCGTCGGGGGGCGTGGAGCCCAAGATCCGGCAGGTGGGGTTCGTCACC 180
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CCCGACGCCTCCTCCTCGGCCCCGCCCGCCGAGCCCCCCGCCGCCGCCGCTGCAGCGGTC 240
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GCGGCGGCTGCTGCTGCCGCCTCCTCGGCGGCGGCCGCGGCGGCGCAGGCGCAGGCGTCC 300
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TCCGAGGGGTCCCCCCCGGCGTCCGAGCTCTCCCCGGGCTCGCTCTCCCCCGTAATGATC 360
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CCGCCCCCGCGCCACGCCGACCACCTCGCCCCAGGCTCGCCCTCCCCCGCGGCGTCCCCC 420
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TCCGAGCTGGGCGACGACGAGTCCTGGTCTCGGGCGCCTTCTGCCGCCGAGCTCGAATCA 480
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      AACAATAACGATTTGGCTGAAATACGGAATGACAATGTTCCAGCTTCAATTCCACAAGAG 540
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CAGAATACTTCTACAGCAGAGAGGCGTGCTATTCACGAAGCTCAGCGTGCTGCTATAGCT 600
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GCTGCCAAGGATGCAGGGTTATCATGAAAGTCTGCACGCACTGGTTCAAGGGCTAGTCCT 660
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GCAATGCCCAAGCAAGCCAAATCATCATAAGTTTCTCAGAAGAAAGATGTGCCCCAAGCT 720
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GCATCTACTGCTGCTTCTGAGAAGAAGGTTACTGAACGTCCTTCAGAAAGAGATAGGAAG 780
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      AAAGATGCGCCTCACCCTCGTATGCAGTTTGATGATGTGCACCGGGTGGAGAAAGCAAAA 840
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      AAACGTGCAATTGTAAATCAATCTGAAGCAAGAAACAGAGTTGAATTGTTTAGGCACTTG 900
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CCTCAGTATGTGCATGGCACTCAACTTCCTGGCCTTGAATCAAAGTTTTTTCAACTTGAA 960
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CCAATGCATCCTTCTGTGTACAAGGTTGGGCTCCAATATTTGTCTGGTGAGGTTTCTGGT 1020
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GGAAATGGTCGTTGTATAGCAATGCTTCTTGCATTCCAAGTGGCAATAAAAGATTACTCT 1080
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      ACACCTCCCAAAAAAACTCTGAGTAGAGATCTTACAGCGAAAATCAGCAGTTATGTGTCG 1140
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TTTCTTATTGAGTGCAGGCCTCTGTCAATTAGCATGGGCAATGCTATTAGGTTTTTAAAG 1200
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      AACAGGATTGCCAAGCTACCACTCACATTGTCAGAATCAGAAGCCAAAGCCAGTCTTCAA 1260
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TCTGATATTGATCGATTCATTAATGAAAAAATAGTTGTGGCAGATAAGGTTATTGTCAGT 1320
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      CATGCTATCACAAAAGTCAGAGACAATGATGTCTTGCTGACATATGGGTCATCGTCAGTT 1380
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GTTGAAATGATTCTGGATCATGCTCATGAACTTGGGAGGAAGTTCCGTGTTATAGTGGTA 1440
consensus_12909#1      ------------------------------------------------------------
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      GATTCTCGTCCCAAGCTTGAGGGACAAGGATTACTACGTAGATTAGTGGAAAAGGGCATC 1500
consensus_12909#1      ----------------------------------------------------------TC 2
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      AACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTT 1560
consensus_12909#1      AACTGCACGTATACACATATTAATGCCATCTCATACATCATGCATGAAGTTACAAGAGTT 62
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTTTAGAGTCGGGACAGCA 1620
consensus_12909#1      TTCTTGGGTGCCTCCTCAATACTATCAAATGGAACAGTTTATTCTAGAGTCGGGACAGCA 122
consensus_12909#2      ----------------------------------------------AGGACGAGACAAGG 14
                                                                       * ** ****   

consensus_12909#0      TCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATAC 1680
consensus_12909#1      TCTGTGGCAATGGTTGCACATGCATTTGGAATTCCTGTTCTTGTGTGCTGTGAGGCATAC 182
consensus_12909#2      GGCTGGGCGACGACGAGTCCTGGTCGCGGGCGCCTTCTGCCGCCGAGCTC---GGTACGC 71
                            *** * *      * **     **    * * * *    * ***    ** *  *

consensus_12909#0      AAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGAT 1740
consensus_12909#1      AAATTTCATGAGAGGGTGCAACTTGATTCTATATGTGCTAATGAGCTTGGTGATCCAGAT 242
consensus_12909#2      GCTCTT-----GAGCCTTTATCCGGTTGCAGCAATTTCGAAAGCGCTTTCTG--CGAATT 124
                           **     ***  *  * *  * * *   *  * * ** * ****  **  * *  *

consensus_12909#0      GTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGC-CATCTTAAGAACTTGGCAGACAA 1799
consensus_12909#1      GTCATTTTGAAAGTTCCTGGGAAGGCAGATTTGGGC-CATCTTAAGAACTTGGCAGACAA 301
consensus_12909#2      GAGGCCGCGGACGTTGCTATGTATGATGGTACTGTCACGAACTGAAAATTTT-----TGA 179
                       *       * * *** **  * * *  * *   * * *    * * ** **        *

consensus_12909#0      TGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGT-GTCGA 1858
consensus_12909#1      TGAAAATCTCCAACTGTTAAATCTTACGTATGATGCCACCCCTTCTGACTATGT-GTCGA 360
consensus_12909#2      CGAGAATTTCATAC-GGTGAAGCATAGGAACGGAGNTTATACCTCTGGTTATGTAGAGGA 238
                        ** *** **  ** * * ** * ** * * *  *      * ****  ***** *  **

consensus_12909#0      TGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGT 1918
consensus_12909#1      TGATCATAACAGATTATGGAATGCTTCCACCCACAAGTGTACCTGTCATTGTGAGAGAGT 420
consensus_12909#2      TGTGTGTGCTGCATCTGCGTAAACCGTAACATG-AAGNTTATGCTCAATAATGGAAATTT 297
                       **    *     **    * *  *    **    ***  **      **  **  *   *

consensus_12909#0      ATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACACCAATTTTGGTAACTG 1978
consensus_12909#1      ATCGCAAAGAACAGCTGTGGATATAGATGTACTGCATTATGACAACAATTTTGGTAACTG 480
consensus_12909#2      TTTTGAACNCATAAGATTCGAATTCGACTCACT-TGGCATCACANTA------------- 343
                        *   **   * *    * **  * **   ***     ** ***  *             

consensus_12909#0      TTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTC 2038
consensus_12909#1      TTGTTGGCTTGCTGCCCAAAGTGCGGGATGCGTGAAACATGTACTTCTGTTTGAGAGCTC 540
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCCCAAGATGGTCCAA 2098
consensus_12909#1      TCAGCCGCCAAACCTTTTTTCTTTTGAGCTTATCAATTTGTTTGCCACAAGATGGTCCAA 600
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      TTTTGATATCCCCATGGCTCCGTCTAAAAAAAAAAAAAAAAAA----------------- 2141
consensus_12909#1      TTTTGATATCACCATGGCTCCGTCTATGAAGATTGCACTCTGGCACCTCTAGAGGGGTTA 660
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      ------------------------------------------------------------
consensus_12909#1      TGTTGGTGGTAGTCATCAAACGTTGTGATGCAACTATGCTCGTACCTATGTCTTCCTGAG 720
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      ------------------------------------------------------------
consensus_12909#1      CCTCCTCTGGTCATGCGCGTGATAGTAACTGGGACCTGAGATGAATTCGAAGCTATATTT 780
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      ------------------------------------------------------------
consensus_12909#1      GTAACAGTATTCACCTGTCCAATACATCATGTAGATTGGGGGGACTTCGCGATTACGCAT 840
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      ------------------------------------------------------------
consensus_12909#1      GAGGTATCGGGATAGGGATAGGTTGCGGAAATCTCATACGTTGCCTGAGCACTTCGCGAT 900
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      ------------------------------------------------------------
consensus_12909#1      GCCTATAATTTACTAGGAATATTTTGCAACTTGGGGATAGTTAGATAAAAACCGATTTTC 960
consensus_12909#2      ------------------------------------------------------------
                                                                                   

consensus_12909#0      -------------
consensus_12909#1      AAGCTGCATGGAA 973
consensus_12909#2      -------------