Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12912 cluster # 12912       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12912#0 length = 1397 sequences # 8  
consensus_12912#1 length = 887 sequences # 3  

consensusID : consensus_12912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1397
fasta sequence
                              [ACGTCGACGCTCGCAGGGGCTCGGGCTCGTCGGCGGCGGCCGTCGCGACCACCCGCACCGGCGCCGTCGCAGGGAACCCCCTCGAGTTCATGAGGTCCAAGCTCATGCTGCTCGTCTCCCACGAGCTCTCCCTCTCCGGGGGACCATTGTTACTGATGGAGTTGGCATTTCTTCTGCGGCAGGTTGGTTCGCAAGTGGTGTGGATAACAAACCAGAGATCGGAAGAAACAAATGATGTTACATATA-GCTTGGAGCATAAGATGTTGAGCCATGGAGTGCAGGTATTACCTGCTAGGGGACATGAGGCGATTGATACTGCCCTAAAGGCTGATCTTGTTATCTTGAACACTGCTGTTGCTGGCAAGTGGCTTGATGCTGTCCTAAATGACCATGTTCCCCAAGTTCTTCCCAAGATTTTGTGGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTCTGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTCATGACCGTTTGAAAATACAGATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGGAGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTGAGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATTCAAGTTGCCAGTGTTGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGG-AAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGG-CCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTT-GTAGCGTCCAAAATGGCATTCTCAG-TTTTCTGTGCT-ACAT-GGAGTAT-GTAGA-TCCAGATTTTA-CCAAGTTTGGAC-TCGAG-TTTGATTGTAAA]

[+] EMBL CB663111             [ACGTCGACGCTCGCAGGGGCTCGGGCTCGTCGGCGGCGGCCGTCGCGACCACCCGCACCGGCGCCGTCGCAGGGAACCCCCTCGAGTTCATGAGGTCCAAGCTCATGCTGCTCGTCTCCCACGAGCTCTCCCTCTCCGGGGGACCATTGTTACTGATGGAGTTGGCATTTCTTCTGCGGCAGGTTGGTTCGCAAGTGGTGTGGATAACAAACCAGAGATCGGAAGAAACAAATGATGTTACATATA GCTTGGAGCATAAGATGTTGAGCCATGGAGTGCAGGTATTACCTGCTAGGGGACATGAGGCGATTGATACTGCCCTAAAGGCTGATCTTGTTATCTTGAACACTGCTGTTGCTGGCAAGTGGCTTGATGCTGTCCTAAATGACCATGTTCCCCAAGTTCTTCCCAAGATTTTGTGGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTCTGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTCATGACCGTTTGAA       ATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGGAGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTGAGTTCCTTGGAGTACAGAGTGAAGATCTTGTGTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB661667             [                                                  ACCCGCACCGGCGCCGTCGCAGGGAACCCCCTCGAGTTCATGAGGTCCAAGCTCATGCTGCTCGTCTCCCACGAGCTCTCCCTCTCCGGGGGACCATTGTTACTGATGGAGTTGGCATTTCTTCTGCGGCAGGTTGGTTCGCAAGTGGTGTGGATAACAAACCAGAGATCGGAAGAAACAAATGATGTTACATATA GCTTGGAGCATAAGATGTTGAGCCATGGAGTGCAGGTATTACCTGCTAGGGGACATGAGGCGATTGATACTGCCCTAAAGGCTGATCTTGTTATCTTGAACACTGCTGTTGCTGGCAAGTGGCTTGATGCTGTCCTAAATGACCATGTTCCCCAAGTTCTTCCCAAGATTTTGTGGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTCTGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTCATGACCGTTTGAAAATACAGATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGGAGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTGAGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCNAGTTTGAGACACAATTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB660163             [                                                                                                                                                                                                                                           TGTTACATCTATTCTTGGAGCATAAGATGTTGAGCCATGGAGTGCAGGTATTACCTGCTAGGGGACATGAGGCGATTGATACTGCCCTAAAGGCTGATCTTGTTATCTTGAACACTGCTGTTGCTGGCAAGTGGCTTGATGCTGTCCTAAATGACCATGTTCCCCAAGTTCTTCCCAAGATTTTGTGGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTCTGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTCATGACCGTTTGAAAATACAGATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGGAGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTGAGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTCAGAACTCTCACGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATTCAAGTTGCCA                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA755525             [                                                                                                                                                                                                                                                                                                                                                                                                                  GTTCTTCCCAAGATTTTGTGGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTCTGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTCATGACCGTTTGAAAATACAGATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGGAGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB660162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGAGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTGAGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATTCAAGTTGCCAGTGTTGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGG AAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGG CCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTT GTAGCGTCCAAAATGGCATTCTCAG TTTTCTGTGCTAACAT GGAGTAT GTAGA TCCAGAATGTA CCAAGTTTGGAC TCGAG TTTGATTGTAAA]
[-] EMBL CB663112             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTGAGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATTCAAGTTGCCAGTGTTGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGG AAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGG CCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTT GTAGCGTCCAAAATGGCATTCTCAG TTTTCTGTGCTAACAT GGAGTAT GTAGA TCCAGATTTTA CCAAGTTTGGAC TCGAG             ]
[+] EMBL C74729               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tnATCCGTGAGTNCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGC ATGGCATTCAAGTTGCCAGTGTT GGCACGGCGGCC GAGGGACCACGGAGATCGTCGTGGACGntca                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA765812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGAGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTGGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGAAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGACCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATGACGATTGAAGCAATGGCATTCAAGTTGCCAGTGTTGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGGAAAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGGTAGCGTCCAAAATGGCATTCTCAGNTTTTCTGTGCT ACATGGGAGTATGGTAGATTCCAGATTTTACCCAAGTTTGGACTTCGAGNTTTG        ]


>consensus_12912#0 ACGTCGACGCTCGCAGGGGCTCGGGCTCGTCGGCGGCGGCCGTCGCGACCACCCGCACCG GCGCCGTCGCAGGGAACCCCCTCGAGTTCATGAGGTCCAAGCTCATGCTGCTCGTCTCCC ACGAGCTCTCCCTCTCCGGGGGACCATTGTTACTGATGGAGTTGGCATTTCTTCTGCGGC AGGTTGGTTCGCAAGTGGTGTGGATAACAAACCAGAGATCGGAAGAAACAAATGATGTTA CATATAGCTTGGAGCATAAGATGTTGAGCCATGGAGTGCAGGTATTACCTGCTAGGGGAC ATGAGGCGATTGATACTGCCCTAAAGGCTGATCTTGTTATCTTGAACACTGCTGTTGCTG GCAAGTGGCTTGATGCTGTCCTAAATGACCATGTTCCCCAAGTTCTTCCCAAGATTTTGT GGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTC TGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTC ATGACCGTTTGAAAATACAGATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGG AGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTG AGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGTG GAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAGA AGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAGA CCAAGTTTGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGTTC ACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGTTC AGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATTCA AGTTGCCAGTGTTGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAA CCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGTAA GGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGA AGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGTTC TGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAATG GCATTCTCAGTTTTCTGTGCTACATGGAGTATGTAGATCCAGATTTTACCAAGTTTGGAC TCGAGTTTGATTGTAAA



consensusID : consensus_12912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 887
fasta sequence
                              [ATCTCCTGCCTCATGCTTCCATATGACAGGGTGTGTTTGGTTGCAAGCTACACTTTGCCACAGTTTGCCACGCCTAAGGTTAGGCAAATTTGACAGGTGTTTGGTTGTAGCCACAGTTGTGGCAAGATTCCCCTCCAACAAATTGGGTCCCACGTGTCAATGGCTCAAAAAAGTGTGGCAAGATTCCTTTAGGCTTAGTAAGTTGTGGCTAACAATTTGATCACCTCACCTTAGGCAAGGTGTGGCAACTTTTGTTGGCAAGTAATGGTAAAGTGTGGCTGGGAACCAAACAGCCCCACAATTTCATTGACTTGGGTTTAATGTCACACTGCACCCTCCTATATCTATCTATACTATCAGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAATGGCATTCTCAGTTTTCTGTGCTAACATGGAGTATGTAGATCCAGATTTTACCAAGTTTGGACTCGAGTTTGATTGTAACTTGCTGTCTGTTACATATGTCCATTCTTTTTCCTTTTTCTTCACGTAGCTTTATTATTTTTTTGGTTTACCTGGTTGGGGTTTAGTCATCCAACTTTACAACAACATTCTAATTGGTCAATTCTTCTTGTTGACGTGCAAGTAATCTTAAAAAAAAAAAAAAA]

[-] EMBL CB661668             [ATCTCCTGCCTCATGCTTCCATATGACAGGGTGTGTTTGGTTGCAAGCTACACTTTGCCACAGTTTGCCACGCCTAAGGTTAGGCAAATTTGACAGGTGTTTGGTTGTAGCCACAGTTGTGGCAAGATTCCCCTCCAACAAATTGGGTCCCACGTGTCAATGGCTCAAAAAAGTGTGGCAAGATTCCTTTAGGCTTAGTAAGTTGTGGCTAACAATTTGATCACCTCACCTTAGGCAAGGTGTGGCAACTTTTGTTGGCAAGTAATGGTAAAGTGTGGCTGGGAACCAAACAGCCCCACAATTTCATTGACTTGGGTTTAATGTCACACTGCACCCTCCTATATCTATCTATACTATCAGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAATGGCATTCTCAGTTTTCTGTGCTAACATGGAGTATGTAGATCCAGATTTTACCAAGTTTGGACTCGAGTTTGATTGTAACTTGCTGTCTGTTACATATGTCCATTCTTTTTCCTTTTTCTTCACGTAGCTTTATTATTTTTTTGGTTTACCTGGTTGGGGTTTAGTCATCCAACTTTACAACAACATTCTAATTGGTCAATTCTTCTTGTTGA                              ]
[-] EMBL CF306312             [                                                                                                                                                                                                                                                                                                                                                              gccagtgttGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAATGGCATTCTCAGTTTTCTGTGCTAACATGGAGTATGTAGATCCAGATTTTACCAAGTTTGGACTCGAGTTTGATTGTAACTTGCTGTCTGTTACATATGTCCATTCTTTTTCCTTTTTCTTCACGTAGCTTTATTATTTTTTTGGTTTACCTGGTTGGGGTTTAGTCATCCAACTTTACAACAACATTCTAATTGGTCAATTCTTCTTGTTGACGTGCAAGTAATCTTAAAAAAAAAAAAAAA]
[+] EMBL CB647523             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGTTCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAATGGCATTCTCAGTTTTCTGTGCTAACATGGAGTATGTAGATCCAGATTTTACCAAGTTTGGACTCGAGTTTGATTGTAACTTGCTGTCTGTTACATATGTCCATTCTTTTTC                                                                                                                                   ]


>consensus_12912#1 ATCTCCTGCCTCATGCTTCCATATGACAGGGTGTGTTTGGTTGCAAGCTACACTTTGCCA CAGTTTGCCACGCCTAAGGTTAGGCAAATTTGACAGGTGTTTGGTTGTAGCCACAGTTGT GGCAAGATTCCCCTCCAACAAATTGGGTCCCACGTGTCAATGGCTCAAAAAAGTGTGGCA AGATTCCTTTAGGCTTAGTAAGTTGTGGCTAACAATTTGATCACCTCACCTTAGGCAAGG TGTGGCAACTTTTGTTGGCAAGTAATGGTAAAGTGTGGCTGGGAACCAAACAGCCCCACA ATTTCATTGACTTGGGTTTAATGTCACACTGCACCCTCCTATATCTATCTATACTATCAG GGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCAC CCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCAC GAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGTGAAGGAAATGTTCATG GAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGTTCTGAAGAAATCGCGG GAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAATGGCATTCTCAGTTTT CTGTGCTAACATGGAGTATGTAGATCCAGATTTTACCAAGTTTGGACTCGAGTTTGATTG TAACTTGCTGTCTGTTACATATGTCCATTCTTTTTCCTTTTTCTTCACGTAGCTTTATTA TTTTTTTGGTTTACCTGGTTGGGGTTTAGTCATCCAACTTTACAACAACATTCTAATTGG TCAATTCTTCTTGTTGACGTGCAAGTAATCTTAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12912#0      ACGTCGACGCTCGCAGGGGCTCGGGCTCGTCGGCGGCGGCCGTCGCGACCACCCGCACCG 60
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      GCGCCGTCGCAGGGAACCCCCTCGAGTTCATGAGGTCCAAGCTCATGCTGCTCGTCTCCC 120
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      ACGAGCTCTCCCTCTCCGGGGGACCATTGTTACTGATGGAGTTGGCATTTCTTCTGCGGC 180
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      AGGTTGGTTCGCAAGTGGTGTGGATAACAAACCAGAGATCGGAAGAAACAAATGATGTTA 240
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      CATATAGCTTGGAGCATAAGATGTTGAGCCATGGAGTGCAGGTATTACCTGCTAGGGGAC 300
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      ATGAGGCGATTGATACTGCCCTAAAGGCTGATCTTGTTATCTTGAACACTGCTGTTGCTG 360
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      GCAAGTGGCTTGATGCTGTCCTAAATGACCATGTTCCCCAAGTTCTTCCCAAGATTTTGT 420
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      GGTGGATCCATGAAATGCGAGGGCATTACTTTAAGCTTGAATATGTCAAACATCTTCCTC 480
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      TGGTTGCTGGAGCCATGATTGATTCTCATACAACGGCTGAATATTGGAAGACCAGGACTC 540
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      ATGACCGTTTGAAAATACAGATGCCACAAACTTATGTTGTTCACCTCGGGAATAGTAAGG 600
consensus_12912#1      ------------------------------------------------------------
                                                                                   

consensus_12912#0      AGTTAATGGAAGTTGCTGAAGATAATGTTGCAAGAAGAGTCCTACGGGAGCATATCCGTG 660
consensus_12912#1      ---------------------------------------ATCTCCTGCCTCATGCTTCCA 21
                                                                ** * *   ***       

consensus_12912#0      AGTTCCTTGGAGTACGGAGTGAAGATCTTGTGTTTGCAATAATAAACAGTGTTTCACGT- 719
consensus_12912#1      TATGACAGGGTGTGTTTGGTTGCAAGCTACACTTTGCCACAGTTTGCCACGCCTAAGGTT 81
                         *  *  ** **     **    * **    ***** * * *   *   *  * * ** 

consensus_12912#0      GGAAAAGGGCAGGACTTATTTCTTCAAGCGTTTTATCAGGGTGTCCAGCTCATCGAACAG 779
consensus_12912#1      AGGCAAATTTGACAGGTGTTTGGTTGTAGCCACAGTTGTGGCAAGATTCCCCTCCAACAA 141
                        *  **       *  * ***  *           *   **       * * ** **** 

consensus_12912#0      AAGAAGTTAAAAGTGCCCACAATGCATGCTGTAGTTGTGGGAAGTGACATAAATGCTCAG 839
consensus_12912#1      ATTGGGTCCCACGTGTCAATGGCTCAAAA---AAGTGTGGCAAGATTCCTTTAGGCTTAG 198
                       *    **   * *** * *     **      *  ***** ***   * *  * *** **

consensus_12912#0      ACCAAGTT-TGAGACACAATTACGTGATTTTGCGGTGAAGAATGGGATTCAGGACCGGGT 898
consensus_12912#1      --TAAGTTGTGGCTAACAATTTGATCACCTCACCTTAGG----------CAAGGTGTGGC 246
                          ***** **    ******   * *  *  *  *             ** *    ** 

consensus_12912#0      TCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGT 958
consensus_12912#1      AACTTTTGTTGGCAAG-TAATGGTAAAG--------TGTGGCTGGGAACCAAACAGCCCC 297
                           *****   ****  * * * *  *        * ******  *   *         

consensus_12912#0      TCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATT 1018
consensus_12912#1      ACA-ATTTCATTGACTTGGGTTTAATG--TCACACTGCACCCTCCTATATC-----TATC 349
                        ** *  **   * *  * *   ****  *   *  *    *   *  * *      ** 

consensus_12912#0      CAAGTTGCCAGTGTTGGGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTC 1078
consensus_12912#1      TATACTATCAG-----GGCACGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTC 404
                        *   *  ***     ********************************************

consensus_12912#0      AACCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGT 1138
consensus_12912#1      AACCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCGCCCCTCGCGAAGAACATGGT 464
                       ************************************************************

consensus_12912#0      AAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGT 1198
consensus_12912#1      AAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGT 524
                       ************************************************************

consensus_12912#0      GAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGT 1258
consensus_12912#1      GAAGGAAATGTTCATGGAGCACCACATGGCTGGTAGGATCGCGGCCGTGTTGCAGGAAGT 584
                       ************************************************************

consensus_12912#0      TCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAA 1318
consensus_12912#1      TCTGAAGAAATCGCGGGAACATTCTCACTCTTGAGCTTTTGCTTTTTGTAGCGTCCAAAA 644
                       ************************************************************

consensus_12912#0      TGGCATTCTCAGTTTTCTGTGCTA-CATGGAGTATGTAGATCCAGATTTTACCAAGTTTG 1377
consensus_12912#1      TGGCATTCTCAGTTTTCTGTGCTAACATGGAGTATGTAGATCCAGATTTTACCAAGTTTG 704
                       ************************ ***********************************

consensus_12912#0      GACTCGAGTTTGATTGTAAA---------------------------------------- 1397
consensus_12912#1      GACTCGAGTTTGATTGTAACTTGCTGTCTGTTACATATGTCCATTCTTTTTCCTTTTTCT 764
                       *******************                                         

consensus_12912#0      ------------------------------------------------------------
consensus_12912#1      TCACGTAGCTTTATTATTTTTTTGGTTTACCTGGTTGGGGTTTAGTCATCCAACTTTACA 824
                                                                                   

consensus_12912#0      ------------------------------------------------------------
consensus_12912#1      ACAACATTCTAATTGGTCAATTCTTCTTGTTGACGTGCAAGTAATCTTAAAAAAAAAAAA 884
                                                                                   

consensus_12912#0      ---
consensus_12912#1      AAA 887
                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)