These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2651 fasta sequence [CACACCGTCACAGCCTCCACGCCACCGTCGCCGGCCCCCCGCTTTCCCCGACTCTACCGCCTCCACGCCGCCGTCGCTGCCGCCCTTCTCCCCTCCCCCCCTTTTCCCCCACGCCATCCAACCGTCACAGCCTCCACGCCGTCGTCGCCGCCCCCCGGACTCCACCGCATCCACGCCGGCGTCGCCGCAGCGGGAGAAGGAGGTCTCCGCGCGACGGATTCCGGAGACGCCGCGGTCTTCTCCCTCCCGCGTGGTCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAACGCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCACCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGATGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTCTCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCCAGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTCATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTTTCTTAATATACATGTATATATTTTCATATATGCAAACATTGGGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTCTTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTTGAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGTCAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGTGAGCAGCTTTCTAGACCTCTTTGCAATTTTGTTTGGTCTTTGTTTATTCCTTGCAAATTGTAGGCTGACATCGCCATCATCTGATTGTTTATCAGACCTGATCGTTTAGTTTAGTTTTTTTTTTTTTTTTTTGCATTGCATCAACGTGAGGACGCTTCATAATTAGGGAGAAACTGTGGGTAAAAAGAATTCCAGGTGCCAAATGCGTGGGTAAAAAGAATCATGGACTGATATTATAGGAGACATTGAAATGTTTCATGAACTGTGAAAATAAATATTTGATTCAATGAGGCTGTTCACAGTCTGAAAACAATGTTCTGTTGATAGGCTTCAACCTTTCATTTGTAGCTGCAGCCATATACGCACAAATTTCATTAAAGCTTGGTGCTCTCAGCACTTAAATGCCAAAACAGATCTCAATTCGTATATGACCTGAGTTTTTTTTTTTTTTGAAAGATGGGCAAAAGCTTTGCCTCCTTTGTATTAATAGAGAAGGAGCTGAGTTATTGGTCTGAGTGTCTTGGATCTTATTAGGAAACTGGGCATTTGTAACAAGAAATTTAGATGTGTCAGAGGAATAGCTCATTAACCAGAACATAATTGGTTTATCAACCAGATATAATGCACATTATCAATGAAATAGACCCTCTACCAGCCTCTCTGGCTTTACTCCTGATATTGAGGAACTTTTATTATTTTTTTATGGGTAGTATAAAGCTTGCTCTT-GCTAGGTTGTGGTTATTAAACAAAATTTAGAAGCTTCACATCTGATACATGCTGACATCCCTTACTGGATTATTTTGACATGATTGCTATGAGAATATGGCCGAGTTTAGTTCCAAACTTTTTATTCAAACTTCCAACTTTTTTATCACATCAAAACTTTCCT--ACACATAAACTTCCAACTTTTCCGTCATATCATTCCAATTTCAATCAAACTTCCAATTTCGGCGTGAACTAAACACACCCTGTGTGTTGGAATTCTTTTCAGGCTGTTTTCCATATAGCCAAGTAAAACTCGTAGGCAATGTAATGGTAGTAACAAGTAATGTATTCCTCACAGTGATATTTCACCATGCTATCATTCTTTACGAGCATCTTGTGAATGGTTTCAGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAATATAATATAATAAATTTGTGCGGAGGTTTCTGGATGAGCCTCTTAT] [+] EMBL AK122114 [CACACCGTCACAGCCTCCACGCCACCGTCGCCGGCCCCCCGCTTTCCCCGACTCTACCGCCTCCACGCCGCCGTCGCTGCCGCCCTTCTCCCCTCCCCCCCTTTTCCCCCACGCCATCCAACCGTCACAGCCTCCACGCCGTCGTCGCCGCCCCCCGGACTCCACCGCATCCACGCCGGCGTCGCCGCAGCGGGAGAAGGAGGTCTCCGCGCGACGGATTCCGGAGACGCCGCGGTCTTCTCCCTCCCGCGTGGTCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAACGCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCACCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGATGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTCTCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCCAGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTCATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTTTCTTAATATACATGTATATATTTTCATATATGCAAACATTGGGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTCTTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTTGAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGTCAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGTGAGCAGCTTTCTAGACCTCTTTGCAATTTTGTTTGGTCTTTGTTTATTCCTTGCAAATTGTAGGCTGACATCGCCATCATCTGATTGTTTATCAGACCTGATCGTTTAGTTTAGTTTTTTTTTTTTTTTTTTGCATTGCATCAACGTGAGGACGCTTCATAATTAGGGAGAAACTGTGGGTAAAAAGAATTCCAGGTGCCAAATGCGTGGGTAAAAAGAATCATGGACTGATATTATAGGAGACATTGAAATGTTTCATGAACTGTGAAAATAAATATTTGATTCAATGAGGCTGTTCACAGTCTGAAAACAATGTTCTGTTGATAGGCTTCAACCTTTCATTTGTAGCTGCAGCCATATACGCACAAATTTCATTAAAGCTTGGTGCTCTCAGCACTTAAATGCCAAAACAGATCTCAATTCGTATATGACCTGAGTTTTTTTTTTTTTTGAAAGATGGGCAAAAGATTTGCCTCCTTTGTATTAATAGAGAAGGAGCTGAGTTATTGGTCTGAGTGTCTTGGATCTTATTAGGAAACTGGGCATTTGTAACAAGAAATTTAGATGTGTCAGAGGTATAGCTCATTAACCAGAACATAATTGGTTTATCAACCAGATATAATGCACATTATCAATGAAATAGACCCTCTACCAGCCTCTCTGGCTTTACTCCTGATATTGAGGAACTTTTATTATTTTTTTATGGGTAGTATAAAGCTTGCTCTT GCTAGGTTGTGGTTATTAAACAAAATTTAGAAGCTTCACATCTGATACATGCTGACATCCCTTACTGGATCATTTTGACATGATTGCTATGAGAATATGGCCGAGTTTAGTTCCAAACTTTTTATTCAAACTTCCAACTTTTTTATCACATCAAAACTTTCCT ACACATAAACTTCCAACTTTTCCGTCATATCATTCCAATTTCAATCAAACTTCCAATTTCGGCGTGAACTAAACACACCCTGTGTGTTGGAATTCTTTTCAGGCTGTTTTCCATATAGCCAAGTAAAACTCGTAGGCAATGTAATGGTAGTAACAAGTAATGTATTCCTCACAGTGATATTTCACCATGCTATCATTCTTTACGAGCATCTTGTGAATGGTTTCAGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAATATAATATAATAAATTTGTGCGGAGGTTTCTGGATGAGCCTCTTAT] [+] EMBL CA754322 [CACACCGTCACAGCCTCCACGCCACCGTCGCCGGCCCCCCGCTTTCCCCGACTCTACCGCCTCCACGCCGCCGTCGCTGCCGCCCTTCTCCCCTCCCCCCCTTTTCCCCCACGCCATCCAACCGTCACAGCCTCCACGCCGTCGTCGCCGCCCCCCGGACTCCACCGCATCCACGCCGGCGTCGCCGCAGCGGGAGAAGGAGGTCTCCGCGCGACGGATTCCGGAGACGCCGCGGTCTTCTCCCTCCCGCGTGGTCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAACGCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCACCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGATGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTCTCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGAC ACTTTCTGCAGCCGCCGATCGCCAGACACAT ] [+] EMBL CB653152 [ CGTCACATCCTCCACGCCACCGTCGCCGGCCCCCCGCTTTCCCCGACTCTACCGCCTCCACGCCGCCGTCGCTGCCGCCCTTCTCCCCTCCCCCCCTTTTCCCCCACGCCATCCAACCGTCACAGCCTCCACGCCGTCGTCGCCGCCCCCCGGACTCCACCGCATCCACGCCGGCGTCGCCGCAGCGGGAGAAGGAGGTCTCCGCGCGACGGATTCCGGAGACGCCGCGGTCTTCTCCCTCCCGCGTGGTCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAACGCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCACCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGATGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTCTCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCCAGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTCATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTCTCTTAATATACATGTATATATTTTCATATATGCAAACATTGCGATGCGACATTATCTATTACAACACTGAAAGTTTCTGA ] [+] EMBL CA759286 [ TTTTTTTTTTTTTTGCATTGCATCAACGTGAGGACGCTTCATAATTAGGGAGAAACTGTGGGTAAAAAGAATTCCAGGTGCCAAATGCGTGGGTAAAAAGAATCATGGACTGATATTATAGGAGACATTGAAATGTTTCATGAACTGTGAAAATAAATATTTGATTCAATGAGGCTGTTCACAGTCTGAAAACAATGTTCTGTTGATAGGCTTCAACCTTTCATTTGTAGCTGCAGCCATATACGCACAAATTTCATTAAAGCTTGGTGCTCTCAGCACTTAAATGCCAAAACAGATCTCAATTCGTATATAACCTGA TTTTTTTTTTGAAAGATGGGCAAAAGCTTTGCCTCCTTTGTATTAATAGAGAAGGAGCTGAGTTATTGGTCTGAGTGTCTTGGATCTTATTAGGAAACTGGGCATTTGTAACAAGAAATTTAGATGTGTCAGAGGAATAGCTCATTAACCAGAACATAATTGGTTTATCAACCAGATATAATGCACATTATCAATGAAATAGACCCTCTACCAGCCTCTCTGGCTTTACTCCTGATATTGAGGAACTTTTATTATTTTTTTATGGGTAGTATAAAGCTTGCTCTTNGCTAGGTTGNGGTTATTAAACAAAATTTAGAAGCTTCACATCTGATACATGCTGACATCCCTTACTGGATTATTTTGACATGATTGCTA ] [-] EMBL CB627732 [ AAGATGGGCAAAAGCTTTGCCTCCTTTGTATTAATAGAGAAGGAGCTGAGTTATTGGTCTGAGTGTCTTGGATCTTATTAGGAAACTGGGCATTTGTAACAAGAAATTTAGATGTGTCAGAGGAATAGCTCATTAACCAGAACATAATTGGTTTATCAACCAGATATAATGCACATTATCAATGAAATAGACCCTCTACCAGCCTCTCTGGCTTTACTCCTGATATTGAGGAACTTTTATTATTTTTTTATGGGTAGTATAAAGCTTGCTCTT GCTAGGTTGTGGTTATTAAACAAAATTTAGAAGCTTCACATCTGATACATGCTGACATCCCTTACTGGATTATTTTGACATGATTGCTATGAGAATATGGCCGAGTTTAGTTCCAAACTTTTTATTCAAACTTCCAACTTTTTTATCACATCAAAACTTTCCTACACACATAAACTTCCAACTTTTCCGTCATATCATTCCAATTTCAATCAAACTTCCAATTTCGGCGTGAACTAAACACACCCTGTGTGTTGGAATTCTTTTCAGGCTGTATTCCATATAGCCAAGTAAAACTCGTAGGCAATGTAATAGTAGTAACAAGTAATGTATTCCTCACAGTGATATTTCACCATGCTATCATTCTTTACGAGCATCTTGTGAATGGTTTCAGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACAGAACTTATACCATCTATTTTCTT ] consensusID : consensus_12918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1551 fasta sequence [AGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTCTTCTCCCTCCCGCGTGGTCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAACGCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCACCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGATGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTCTCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCCAGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTCATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTTTCTTAATATACATGTATATATTTTCATATATGCAAACATTGGGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTCTTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTTGAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGTCAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCT-CCTC-TCTCTATCCATCAGTTG-CCTGCC-GACGA-TCTTCTG-CCG-ACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAATATAATATCATACAAAAAGGGA] [+] EMBL CB671808 [AGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTCTTCTCCCTCCCGCGTGGTCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAACGCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCACCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGATGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTCTCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCCAGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTCATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTTTCTTAATATACATGTATATATTTTCATATATGCAAACATTGNGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAG ] [-] EMBL CB653153 [ TATTTTCATATATGCAAACATTGGGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTCTTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTTGAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGTCAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCT CCTC TCTCTATCCATCAGTTG CCTGCC GACGA TCTTCTG CCG ACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGGTAGCCAAAATAAAAAGAGAAATATAATATCATACAAAAAGGGA] [-] EMBL CB659475 [ CATATATGCAAACATTGGGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTCTTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTTGAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGTCAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCT CCTC TCTCTATCCATCAGTTG CCTGCC GACGA TCTTCTG CCG ACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAATATAATAT ] [-] EMBL CB671809 [ AACATTGGGATGCGACATTATCTATTTCAACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATATAGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTCTTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTTGAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGTCAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCT CCTC TCTCTATCCATCAGTTG CCTGCC GACGA TCTTCTG CCG ACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTAGTGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGG TAAGGGATAGCCAAAATAAAAAGAGAAATATAATATC T AAAAAGGa ] [+] EMBL BI811844 [ gtCCTCCCTCTTCTCTATCCATCATTTGCCCTGCCTGACGATTCTTCTGCCCGTACGAAGT CT CTGTCC CCGCGATC TTTGCATAC CCAC CCAC TTT GCCTTCTCAGATGATCGCTGGGAA GCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGC ATTTTCCCCTTTACTGTACAGAACTTATACCATCTATTTTCTTAAATGTCAAATACTTAATTGAGACTGC TTGTGTC CTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAATATAATAaaaa ] consensusID : consensus_12918#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [GAGAAGTTAATAGCCAAAGCAATAGGTTGCACGCTCTCAGGTGCGAGGCCACACCACAGCTGTTCAATATGGCCGTTGTTAAAAGGCCAGCCTGCCGTTCAAGATGTTAGCAGGCCTGGGCACGCGGCCAACTCCGGAATGCATTAAAAGGCATCGGAATCGGCCCGGCGGGGACGGATTGGGGGCCTGCATTTTGCCAATGCGGAAATGGTGTTGAATTAATGTCAATAAANNTTATAAAAAAGACCTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATGGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACT] [-] EMBL AW155408 [GAGAAGTTAATAGCCAAAGCAATAGGTTGCACGCTCTCAGGTGCGAGGCCACACCACAGCTGTTCAATATGGCCGTTGTTAAAAGGCCAGCCTGCCGTTCAAGATGTTAGCAGGCCTGGGCACGCGGCCAACTCCGGAATGCATTAAAAGGCATCGGAATCGGCCCGGCGGGGACGGATTGGGGGCCTGCATTTTGCCAATGCGGAAATGGTGTTGAATTAATGTCAATAAANNTTATAAAAAAGACCTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCCATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAAGTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGATCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATGGACTGCTTGATCTACCTCGACACGATGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATCGATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCTTAAATGTCAAATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12918#0 ---------------------------------------------CACACCGTCACAGCC 15 consensus_12918#1 AGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAA 60 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TCCACGCCACCGTCGCCGGCCCCCCGCTTTCCCCGACTCTACCGCCTCCACGCCGCCGTC 75 consensus_12918#1 ACAATGACGGTATC-TGAGGAATAAGCATCGGCTAACTCTGT-GCCAGCA-GCCGCGGTA 117 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 GCTGCCGCCCTTCTCCCCTCCCCCCCTTTTCCCCCACGCCATCCAACCGTCACAGCCTCC 135 consensus_12918#1 AGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTT 177 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 ACGCCGTCGTCGCCGCCCCCC-GGACTCCACCGCATCCACGCCGGCGTCGCCGCAGCGGG 194 consensus_12918#1 TCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCT 237 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 AGAAGGAGGTCTCCGCGCGACGGATTCCGGAGACGCCGCGGTCTTCTCCCTCCCGCGTGG 254 consensus_12918#1 GGAGTACGGTAGGGGCAGAGGGAATTTCCGG--TGGAGCGGTCTTCTCCCTCCCGCGTGG 295 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAAC 314 consensus_12918#1 TCCCTCCATCACCACCGATTGACCGCCTCCACGATGCCGCCTCCACAGGAGCAGGGGAAC 355 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 GCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCA 374 consensus_12918#1 GCCACGGCCTTCTCCCTCTCCCGCGCGGTCCTCCCCATCAACGCCGTTTCACCGGCTCCA 415 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 CCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGA 434 consensus_12918#1 CCGGTCGCTGTCCAGGCCGCCGCCACCTCAGCTGGGTATTATCTGTGTCTGATGATTTGA 475 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTC 494 consensus_12918#1 TGAATGTTGGATCGAAGGTTTGAATAGAACGGTGATTAGCTGCTGGCTGTCGGGTACTTC 535 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCC 554 consensus_12918#1 TCCAGCAGCCGCCGCCGCTGATCTTCTTCCCAGGACAACTTTCTGCAGCCGCCGATCGCC 595 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 AGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTC 614 consensus_12918#1 AGACACATATCACTTGTTCATGGTTATTTAATTCAAGGCTACTTAGTAGTATATGTTCTC 655 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 ATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTTTCT 674 consensus_12918#1 ATATGGTCTTTAGTACAGTCAGTCTATCATGCATATTATGCTGCAGCAGAACTTTTTTCT 715 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TAATATACATGTATATATTTTCATATATGCAAACATTGGGATGCGACATTATCTATTTCA 734 consensus_12918#1 TAATATACATGTATATATTTTCATATATGCAAACATTGGGATGCGACATTATCTATTTCA 775 consensus_12918#2 ------------------------------------------GAGAAGTTAATAGCCAAA 18 * ** *** * consensus_12918#0 ACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATAT 794 consensus_12918#1 ACACTGAAAGTTTCTGAAAAATATAAGATAGGGAAGTCTGAAAACTTACTATCACAATAT 835 consensus_12918#2 GCAATAGG-----TTGCACGCTCTCAGGT-GCGAGGCCACACCACA-GCTGTT-CAATAT 70 ** * ** * * * ** * * ** * * * ** ** * ****** consensus_12918#0 AGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTC 854 consensus_12918#1 AGGAATAATAGGGAGGTCTATGGCCCTCAATTTCCTCTGTTCTATACCTCTATGTAATTC 895 consensus_12918#2 GGCCGTTGTTAAAAGGCC---AGCCTGCCGTTCAAGATGTTA-GCAGGCCTGGGCA-CGC 125 * * * *** * *** * ** **** * ** * * * consensus_12918#0 TTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTT 914 consensus_12918#1 TTTTATCTGATAGTTTTATATATCACCACCAAATTCATATATACATCATATATAATCTTT 955 consensus_12918#2 GGCCAACTCCGGAATGCATTAAAAGGCATCGGAATCG---GCCCGGCGGGGACGGATTGG 182 * ** * ** * ** * * ** * * * * consensus_12918#0 GAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGT 974 consensus_12918#1 GAGATGATATTTTATATAGTGTAGTCTTACCAATTTCTTTTGTAGTAGATCTGAACACGT 1015 consensus_12918#2 GGGCCTGCATTTTGC-CAATGCGG-------AAATGGTGTTGAATTA---------ATGT 225 * * ***** * ** * ** * * *** * ** * ** consensus_12918#0 CAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCC 1034 consensus_12918#1 CAATGAAGGGTATTAATAATGACTTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCC 1075 consensus_12918#2 CAATAAANNTTAT-AAAAAAGACCTGTTTGTTTTCTGCATTGTAGTTTCAACAAATCGCC 284 **** ** *** ** ** *** ************************************ consensus_12918#0 ATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAA 1094 consensus_12918#1 ATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAA 1135 consensus_12918#2 ATACCCTGTGCCTCCTCTCTCTATCCATCAGTTGCCTGCCGACGATCTTCTGCCGACGAA 344 ************************************************************ consensus_12918#0 GTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGA 1154 consensus_12918#1 GTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGA 1195 consensus_12918#2 GTGCTGCTGTCCGCCGCGATCTTTTGCATACGCCACGCCACGTTTGGCCTTCTCAGATGA 404 ************************************************************ consensus_12918#0 TCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGA 1214 consensus_12918#1 TCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATCGACTGCTTGATCTACCTCGACACGA 1255 consensus_12918#2 TCGCTGGGAAGGCCTCACGGCCCTTCCCCCTGATGGACTGCTTGATCTACCTCGACACGA 464 ********************************** ************************* consensus_12918#0 TGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGTGAGCAGCTTTCTAGA 1274 consensus_12918#1 TGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGC------AA 1309 consensus_12918#2 TGGTCTACAGCAAGGCTGCAGTGCGGTCATGAGGTCCACCTTGGAACAGAGC------AA 518 ******************************************** *** * consensus_12918#0 CCTCTTTGCAATTTTGTTTGGTCTTTGTTTATTCCTTGCAAATTGTAGGCTGACATCGCC 1334 consensus_12918#1 ATGGATTGCAGTTAAGA--AATGCTTATCGATATTCAACATTTCTTAGGTCAGC-TGGTC 1366 consensus_12918#2 ATGGATTGCAGTTAAGA--AATGCTTATCGATATTCAACATTTCTTAGGTCAGC-TGGTC 575 ***** ** * * ** * ** ** * **** * * * * consensus_12918#0 ATCATCTGATTGTTTATCAGACCTGATCGTTTAGTTTA-GTTTTTTTTTTTTTTTTTTGC 1393 consensus_12918#1 AGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTT 1426 consensus_12918#2 AGAGGCTGGGTCACTTTTTGGCATTATTGAGCAGAAGATGTTCTCGCAATTTTCCCCTTT 635 * *** * * * * * * ** * ** * *** * **** * consensus_12918#0 ATTGCATCAACGTGAGGACGCTTCATAATTAGGGAGAAACTGTGGGTAAAAAGAATTCCA 1453 consensus_12918#1 ACTGTACTGAACTTATACCATCTATTTTCTT------AAATGTCAA-ATACTTAATTGAG 1479 consensus_12918#2 ACTGTACTGAACTTATACCATCTATTTTCTT------AAATGTCAA-ATACT-------- 680 * ** * * * * * * * * ** *** * * consensus_12918#0 GGTGCCAAATGCGTGGGTAAAAAGAA-TCATGGACTGATATTATAGGAGACATTGAAATG 1512 consensus_12918#1 ACTGC--ATTGTGTCACTGACGGTTGCTTGATAGCCAAAATAAAAAGAGAAAT-ATAATA 1536 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TTTCATGAACTGTGAAAATAAATATTTGATTCAATGAGGCTGTTCACAGTCTGAAAACAA 1572 consensus_12918#1 TCATACAAAAAGGGA--------------------------------------------- 1551 consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGTTCTGTTGATAGGCTTCAACCTTTCATTTGTAGCTGCAGCCATATACGCACAAATTTC 1632 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 ATTAAAGCTTGGTGCTCTCAGCACTTAAATGCCAAAACAGATCTCAATTCGTATATGACC 1692 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGAGTTTTTTTTTTTTTTGAAAGATGGGCAAAAGCTTTGCCTCCTTTGTATTAATAGAGA 1752 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 AGGAGCTGAGTTATTGGTCTGAGTGTCTTGGATCTTATTAGGAAACTGGGCATTTGTAAC 1812 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 AAGAAATTTAGATGTGTCAGAGGAATAGCTCATTAACCAGAACATAATTGGTTTATCAAC 1872 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 CAGATATAATGCACATTATCAATGAAATAGACCCTCTACCAGCCTCTCTGGCTTTACTCC 1932 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGATATTGAGGAACTTTTATTATTTTTTTATGGGTAGTATAAAGCTTGCTCTTGCTAGGT 1992 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGTGGTTATTAAACAAAATTTAGAAGCTTCACATCTGATACATGCTGACATCCCTTACTG 2052 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 GATTATTTTGACATGATTGCTATGAGAATATGGCCGAGTTTAGTTCCAAACTTTTTATTC 2112 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 AAACTTCCAACTTTTTTATCACATCAAAACTTTCCTACACATAAACTTCCAACTTTTCCG 2172 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TCATATCATTCCAATTTCAATCAAACTTCCAATTTCGGCGTGAACTAAACACACCCTGTG 2232 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGTTGGAATTCTTTTCAGGCTGTTTTCCATATAGCCAAGTAAAACTCGTAGGCAATGTAA 2292 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TGGTAGTAACAAGTAATGTATTCCTCACAGTGATATTTCACCATGCTATCATTCTTTACG 2352 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 AGCATCTTGTGAATGGTTTCAGGAACAGAGCAAATGGATTGCAGTTAAGAAATGCTTATC 2412 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 GATATTCAACATTTCTTAGGTCAGCTGGTCAGAGGCTGGGTCACTTTTTGGCATTATTGA 2472 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 GCAGAAGATGTTCTCGCAATTTTCCCCTTTACTGTACTGAACTTATACCATCTATTTTCT 2532 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 TAAATGTCAAATACTTAATTGAGACTGCATTGTGTCACTGACGGTTGCTTGATAGCCAAA 2592 consensus_12918#1 ------------------------------------------------------------ consensus_12918#2 ------------------------------------------------------------ consensus_12918#0 ATAAAAAGAGAAATATAATATAATAAATTTGTGCGGAGGTTTCTGGATGAGCCTCTTAT 2651 consensus_12918#1 ----------------------------------------------------------- consensus_12918#2 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||